mRNA_P-wetherbeei_contig6700.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6700.3.1
Unique NamemRNA_P-wetherbeei_contig6700.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6700.3.1 vs. uniprot
Match: A0A351T163_9PROT (Rhodanese n=5 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T163_9PROT)

HSP 1 Score: 199 bits (506), Expect = 9.900e-64
Identity = 90/131 (68.70%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    1 MITKGVKKLCAEAETIIETMTVAEVMKVKDDPNVELIDIRDIRELWRDGAIPGAWHVPRGMLEFWIDPESPYAKERFQSGKKFIIFCAGGLRSALAGRAAHEMGLKPVAHMRGGFGEWKAAGGPVEVAEKK 393
            M  K V  +C +AE +IET++  +V+ +KDDPNVE++DIRDIRE+WRDG +P A+HVPRGMLEFWIDP  PY KERFQSGKKFI  CAGGLRSALAG AAH MGL PVAHM GGF  WK AGGPVE  + K
Sbjct:    1 MAIKSVYDMCKQAEQVIETLSAEQVVALKDDPNVEIVDIRDIREIWRDGGVPNAYHVPRGMLEFWIDPNGPYPKERFQSGKKFIFMCAGGLRSALAGLAAHNMGLAPVAHMAGGFAAWKKAGGPVEEVKPK 131          
BLAST of mRNA_P-wetherbeei_contig6700.3.1 vs. uniprot
Match: A0A2E7PGS9_9PROT (Rhodanese n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7PGS9_9PROT)

HSP 1 Score: 197 bits (500), Expect = 8.960e-63
Identity = 91/130 (70.00%), Postives = 107/130 (82.31%), Query Frame = 1
Query:    4 ITKGVKKLCAEAETIIETMTVAEVMKVKDDPNVELIDIRDIRELWRDGAIPGAWHVPRGMLEFWIDPESPYAKERFQSGKKFIIFCAGGLRSALAGRAAHEMGLKPVAHMRGGFGEWKAAGGPVEVAEKK 393
            +TKG+K+LCAEAE  IETMTV EV+ V+DD +V L+DIRDIRELWRDG IPGA H+PRGMLEFW+DPESPY ++ F +GKKFI +CAGGLRSALA +A H+MGL PVAHMRGG+G W  A GP E  E K
Sbjct:    1 MTKGIKQLCAEAEEEIETMTVEEVIAVRDDEDVVLVDIRDIRELWRDGTIPGAQHMPRGMLEFWVDPESPYHRDIFTTGKKFIFYCAGGLRSALAAKAVHDMGLAPVAHMRGGYGAWVKAEGPTEEKEVK 130          
BLAST of mRNA_P-wetherbeei_contig6700.3.1 vs. uniprot
Match: A0A836WRJ6_9PROT (Rhodanese-like domain-containing protein n=1 Tax=Sneathiellales bacterium TaxID=2528251 RepID=A0A836WRJ6_9PROT)

HSP 1 Score: 195 bits (496), Expect = 3.100e-62
Identity = 87/130 (66.92%), Postives = 105/130 (80.77%), Query Frame = 1
Query:    4 ITKGVKKLCAEAETIIETMTVAEVMKVKDDPNVELIDIRDIRELWRDGAIPGAWHVPRGMLEFWIDPESPYAKERFQSGKKFIIFCAGGLRSALAGRAAHEMGLKPVAHMRGGFGEWKAAGGPVEVAEKK 393
            +TKG+K+LCAEAE  IET+   + +K+ DDP+V+++DIRD+RELWR+GA+PGA H PRGMLEFW+DP SPY KE F SGKKF+ FCAGG+RSALA  A   MGL PVAH+ GGFG WK AGGP EV EKK
Sbjct:    1 MTKGIKELCAEAEAEIETIKAEDAIKLMDDPDVQIVDIRDVRELWREGAVPGAHHAPRGMLEFWVDPVSPYFKEIFGSGKKFVFFCAGGMRSALATHAVQRMGLTPVAHIEGGFGAWKEAGGPTEVKEKK 130          
BLAST of mRNA_P-wetherbeei_contig6700.3.1 vs. uniprot
Match: A0A2E2BBI4_9GAMM (Rhodanese n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E2BBI4_9GAMM)

HSP 1 Score: 195 bits (495), Expect = 9.900e-62
Identity = 90/131 (68.70%), Postives = 103/131 (78.63%), Query Frame = 1
Query:    1 MITKGVKKLCAEAETIIETMTVAEVMKVKDDPNVELIDIRDIRELWRDGAIPGAWHVPRGMLEFWIDPESPYAKERFQSGKKFIIFCAGGLRSALAGRAAHEMGLKPVAHMRGGFGEWKAAGGPVEVAEKK 393
            M TKG+K+LC EAE +IETM+V EVM+V  D +V+L+DI DIRELWRDGAIPGA H PRGMLEFW+DP SPY +E F SGKKFI FCAGG+RSALA +A H MGL PVAHM GGFG W  A G +E  E K
Sbjct:    1 MXTKGIKELCEEAEXVIETMSVQEVMRVSXDDDVQLVDIXDIRELWRDGAIPGATHAPRGMLEFWVDPNSPYHREEFASGKKFIFFCAGGMRSALAAQAVHNMGLSPVAHMAGGFGAWVKAEGXIEPKEPK 131          
BLAST of mRNA_P-wetherbeei_contig6700.3.1 vs. uniprot
Match: A0A3D5DK48_9GAMM (Rhodanese n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DK48_9GAMM)

HSP 1 Score: 192 bits (489), Expect = 4.380e-61
Identity = 88/131 (67.18%), Postives = 103/131 (78.63%), Query Frame = 1
Query:    1 MITKGVKKLCAEAETIIETMTVAEVMKVKDDPNVELIDIRDIRELWRDGAIPGAWHVPRGMLEFWIDPESPYAKERFQSGKKFIIFCAGGLRSALAGRAAHEMGLKPVAHMRGGFGEWKAAGGPVEVAEKK 393
            MITKG++ LC EAE  IETM+V +VM VKDDPNV+L+DIRDIRELWR+G IPGA H PRGMLEFW+DP+SPY +E F SGKKFI +CAGG+RSALA ++ H MGL PVAHM GG+  W    GP E  E K
Sbjct:    1 MITKGIEDLCKEAEQEIETMSVKQVMAVKDDPNVQLVDIRDIRELWREGTIPGASHAPRGMLEFWVDPKSPYYREEFGSGKKFIFYCAGGMRSALAAQSVHRMGLTPVAHMAGGYTAWTEENGPTEPKEAK 131          
BLAST of mRNA_P-wetherbeei_contig6700.3.1 vs. uniprot
Match: A0A2E6QLT9_9PROT (Rhodanese n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QLT9_9PROT)

HSP 1 Score: 192 bits (489), Expect = 4.380e-61
Identity = 87/130 (66.92%), Postives = 104/130 (80.00%), Query Frame = 1
Query:    4 ITKGVKKLCAEAETIIETMTVAEVMKVKDDPNVELIDIRDIRELWRDGAIPGAWHVPRGMLEFWIDPESPYAKERFQSGKKFIIFCAGGLRSALAGRAAHEMGLKPVAHMRGGFGEWKAAGGPVEVAEKK 393
            +TKG+K+LCAEAE  IET+  AE +K+  D NV+L+DIRD+RELWR+GAIPGA H PRGMLEFW+DP SPY KE F +GKKF+ FCAGGLRSALA ++   MGLKPVAH+ GGF  W+ AGGPVE  E K
Sbjct:    1 MTKGIKELCAEAEAEIETIPAAEAVKLMKDENVQLVDIRDVRELWREGAIPGALHAPRGMLEFWVDPASPYHKEAFTTGKKFVFFCAGGLRSALATQSVQRMGLKPVAHIEGGFAAWREAGGPVEAKEPK 130          
BLAST of mRNA_P-wetherbeei_contig6700.3.1 vs. uniprot
Match: A0A848W3K1_9PROT (Rhodanese-like domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W3K1_9PROT)

HSP 1 Score: 189 bits (479), Expect = 1.720e-59
Identity = 89/131 (67.94%), Postives = 102/131 (77.86%), Query Frame = 1
Query:    1 MITKGVKKLCAEAETIIETMTVAEVMKVKDDPNVELIDIRDIRELWRDGAIPGAWHVPRGMLEFWIDPESPYAKERFQSGKKFIIFCAGGLRSALAGRAAHEMGLKPVAHMRGGFGEWKAAGGPVEVAEKK 393
            MITKG+K+LCAEAE  IET++V  VM V+DDP+  L+DIRDIRELWRDG IPGA H PRGMLEFW+DPESPY +E F SGKKFI +CAGGLRSALA ++ H MGL PVAHM GGF  W  A GP    E +
Sbjct:    4 MITKGIKQLCAEAEQEIETLSVDLVMAVRDDPDTVLVDIRDIRELWRDGTIPGAIHAPRGMLEFWVDPESPYHREDFGSGKKFIFYCAGGLRSALAAQSVHRMGLAPVAHMAGGFSAWVEAEGPTIEKEAR 134          
BLAST of mRNA_P-wetherbeei_contig6700.3.1 vs. uniprot
Match: A0A2S6QG80_9PROT (Rhodanese domain-containing protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QG80_9PROT)

HSP 1 Score: 188 bits (478), Expect = 1.950e-59
Identity = 89/131 (67.94%), Postives = 103/131 (78.63%), Query Frame = 1
Query:    1 MITKGVKKLCAEAETIIETMTVAEVMKVKDDPNVELIDIRDIRELWRDGAIPGAWHVPRGMLEFWIDPESPYAKERFQSGKKFIIFCAGGLRSALAGRAAHEMGLKPVAHMRGGFGEWKAAGGPVEVAEKK 393
            MITKG+K LC EAE  IET++V +VMK K+ P V L+DIRDIRELWR+G IPG+ H PRGMLEFW+DPESPY ++ F SGKKFI FCAGGLRSALA + A  MGLKPVAHM GGFG W+ A GP+   E K
Sbjct:    1 MITKGIKDLCFEAEKQIETLSVDQVMKEKEAPEVLLVDIRDIRELWREGTIPGSIHAPRGMLEFWVDPESPYHRKDFSSGKKFIFFCAGGLRSALAAQTAQNMGLKPVAHMAGGFGAWRNAEGPIIEKEVK 131          
BLAST of mRNA_P-wetherbeei_contig6700.3.1 vs. uniprot
Match: A0A2S6R1X9_9PROT (Rhodanese domain-containing protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin2 TaxID=2013104 RepID=A0A2S6R1X9_9PROT)

HSP 1 Score: 188 bits (477), Expect = 2.510e-59
Identity = 88/131 (67.18%), Postives = 103/131 (78.63%), Query Frame = 1
Query:    1 MITKGVKKLCAEAETIIETMTVAEVMKVKDDPNVELIDIRDIRELWRDGAIPGAWHVPRGMLEFWIDPESPYAKERFQSGKKFIIFCAGGLRSALAGRAAHEMGLKPVAHMRGGFGEWKAAGGPVEVAEKK 393
            MITKGV++LCAEAE  IET+T  E +K+ +D  V+L+DIRDIRELWR+GA+PGA H PRGMLEFWIDPES Y +E F SGK+F+ FCAGGLRSALA +A   MGLKPVAH+ GGF  WK AGG     EKK
Sbjct:    1 MITKGVEELCAEAEAEIETVTAEEAVKLAEDEGVQLVDIRDIRELWREGAVPGAVHAPRGMLEFWIDPESSYHREVFASGKRFVFFCAGGLRSALATQAVQRMGLKPVAHIAGGFAAWKEAGGTTVAKEKK 131          
BLAST of mRNA_P-wetherbeei_contig6700.3.1 vs. uniprot
Match: A0A2P5VKY1_9PROT (Rhodanese domain-containing protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha1_Bin1 TaxID=2013065 RepID=A0A2P5VKY1_9PROT)

HSP 1 Score: 188 bits (477), Expect = 2.950e-59
Identity = 87/126 (69.05%), Postives = 101/126 (80.16%), Query Frame = 1
Query:    1 MITKGVKKLCAEAETIIETMTVAEVMKVKDDPNVELIDIRDIRELWRDGAIPGAWHVPRGMLEFWIDPESPYAKERFQSGKKFIIFCAGGLRSALAGRAAHEMGLKPVAHMRGGFGEWKAAGGPVE 378
            MITKGV++LC+ AE+IIET +V   M+   D +V  +DIRDIRELWR+GAIPGA H PRGMLEFW+DPESPYAKE FQSGK+F+ FCAGGLRSALA  AAHEMGL PV HM+GG+  W  AGG  E
Sbjct:    1 MITKGVRELCSHAESIIETWSVERAMEAYGDDDVVFVDIRDIRELWREGAIPGATHSPRGMLEFWVDPESPYAKEEFQSGKRFVFFCAGGLRSALAALAAHEMGLAPVCHMQGGYAAWLNAGGTTE 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6700.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351T163_9PROT9.900e-6468.70Rhodanese n=5 Tax=Alphaproteobacteria bacterium Ta... [more]
A0A2E7PGS9_9PROT8.960e-6370.00Rhodanese n=3 Tax=Alphaproteobacteria TaxID=28211 ... [more]
A0A836WRJ6_9PROT3.100e-6266.92Rhodanese-like domain-containing protein n=1 Tax=S... [more]
A0A2E2BBI4_9GAMM9.900e-6268.70Rhodanese n=3 Tax=Gammaproteobacteria TaxID=1236 R... [more]
A0A3D5DK48_9GAMM4.380e-6167.18Rhodanese n=1 Tax=Gammaproteobacteria bacterium Ta... [more]
A0A2E6QLT9_9PROT4.380e-6166.92Rhodanese n=1 Tax=Rhodospirillaceae bacterium TaxI... [more]
A0A848W3K1_9PROT1.720e-5967.94Rhodanese-like domain-containing protein n=1 Tax=A... [more]
A0A2S6QG80_9PROT1.950e-5967.94Rhodanese domain-containing protein n=1 Tax=Alphap... [more]
A0A2S6R1X9_9PROT2.510e-5967.18Rhodanese domain-containing protein n=1 Tax=Alphap... [more]
A0A2P5VKY1_9PROT2.950e-5969.05Rhodanese domain-containing protein n=1 Tax=Alphap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6700contigP-wetherbeei_contig6700:2574..2969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1205680.CAKO01000006_gene3242
PFAMsRhodanese
Model size396
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.23e-51
EggNOG OGsCOG0607@1|root,COG0607@2|Bacteria,1RHQZ@1224|Proteobacteria,2U9DZ@28211|Alphaproteobacteria,2JSV6@204441|Rhodospirillales
DescriptionRhodanese Homology Domain
Cds size396
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186931.2068384-CDS-P-wetherbeei_contig6700:2573..29691683186931.2068384-CDS-P-wetherbeei_contig6700:2573..2969Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6700 2574..2969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6700.3.1prot_P-wetherbeei_contig6700.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6700 2574..2969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6700.3.1

>prot_P-wetherbeei_contig6700.3.1 ID=prot_P-wetherbeei_contig6700.3.1|Name=mRNA_P-wetherbeei_contig6700.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
MITKGVKKLCAEAETIIETMTVAEVMKVKDDPNVELIDIRDIRELWRDGA
IPGAWHVPRGMLEFWIDPESPYAKERFQSGKKFIIFCAGGLRSALAGRAA
HEMGLKPVAHMRGGFGEWKAAGGPVEVAEKK*
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mRNA from alignment at P-wetherbeei_contig6700:2574..2969-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6700.3.1 ID=mRNA_P-wetherbeei_contig6700.3.1|Name=mRNA_P-wetherbeei_contig6700.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig6700:2574..2969- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCACAAAAGGCGTCAAAAAACTTTGCGCAGAAGCCGAAACCATTAT CGAAACCATGACGGTGGCCGAGGTGATGAAGGTAAAGGACGATCCGAATG TTGAATTGATCGATATTCGCGACATACGCGAATTGTGGCGCGACGGCGCC ATTCCGGGGGCCTGGCATGTACCGCGCGGCATGCTGGAATTCTGGATTGA CCCGGAAAGCCCCTACGCCAAGGAACGCTTTCAATCAGGAAAGAAATTCA TCATTTTTTGCGCAGGCGGGTTGCGCTCGGCGCTGGCCGGACGGGCGGCG CATGAAATGGGACTAAAACCCGTGGCGCATATGCGTGGCGGCTTTGGTGA ATGGAAAGCCGCCGGCGGCCCAGTCGAAGTGGCCGAGAAGAAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6700:2574..2969-

>mRNA_P-wetherbeei_contig6700.3.1 ID=mRNA_P-wetherbeei_contig6700.3.1|Name=mRNA_P-wetherbeei_contig6700.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig6700:2574..2969- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCACAAAAGGCGTCAAAAAACTTTGCGCAGAAGCCGAAACCATTAT
CGAAACCATGACGGTGGCCGAGGTGATGAAGGTAAAGGACGATCCGAATG
TTGAATTGATCGATATTCGCGACATACGCGAATTGTGGCGCGACGGCGCC
ATTCCGGGGGCCTGGCATGTACCGCGCGGCATGCTGGAATTCTGGATTGA
CCCGGAAAGCCCCTACGCCAAGGAACGCTTTCAATCAGGAAAGAAATTCA
TCATTTTTTGCGCAGGCGGGTTGCGCTCGGCGCTGGCCGGACGGGCGGCG
CATGAAATGGGACTAAAACCCGTGGCGCATATGCGTGGCGGCTTTGGTGA
ATGGAAAGCCGCCGGCGGCCCAGTCGAAGTGGCCGAGAAGAAATAG
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