mRNA_P-wetherbeei_contig6699.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6699.1.1
Unique NamemRNA_P-wetherbeei_contig6699.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6699.1.1 vs. uniprot
Match: D7FNU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU3_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 9.160e-11
Identity = 64/184 (34.78%), Postives = 93/184 (50.54%), Query Frame = 1 
Query:  148 ARTGTKIADSVREVVNLFQVEHAKVHDQAARLRHQLKERQQQLAVVRGHLSRESSENGTLEATARGRQKRLRAETHRVNCIERAFGTLLAEDRRLAALLDVPRCDLAVFSAESTELWARFSDKATPLLQTVGSAADAADANI-------AAAAAARITLEEEVKAVHQSLDGHRAAARGRQERA 678
            AR    + DSVREVV  F++E+++   ++  L+  L + + QL+ +R HL +ESSENGTLEA  + R  R  A   R+  +E AF  +LA++  +A+       DL VF+AE      R  DK      T  S  D A A +       AAA +    L   V+A  +++       RG QERA
Sbjct:   48 ARATVHLVDSVREVVQAFELEYSQARAESVELKAVLDDHRTQLSDLRRHLEKESSENGTLEAVVQHRAARNTAGDARLRELEAAFKQVLADEGHIASSAAALESDLVVFTAEHK----RIRDKTA----TAASWLDLAQAGLLQRERTLAAAQSESDRLTAAVEAGRRAVADREGLLRGEQERA 223
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6699.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNU3_ECTSI9.160e-1134.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6699contigP-wetherbeei_contig6699:929..1665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size737
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_003350.1
Cds size735
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.779839-CDS-P-wetherbeei_contig6699:930..16651683186930.779839-CDS-P-wetherbeei_contig6699:930..1665Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6699 931..1665 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6699.1.1prot_P-wetherbeei_contig6699.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6699 931..1665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6699.1.1

>prot_P-wetherbeei_contig6699.1.1 ID=prot_P-wetherbeei_contig6699.1.1|Name=mRNA_P-wetherbeei_contig6699.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=245bp
KKPRWERSEGQNGSTMACVTVPKRKFAVAPSEVQRAPASRASVAAMQKKA
RTGTKIADSVREVVNLFQVEHAKVHDQAARLRHQLKERQQQLAVVRGHLS
RESSENGTLEATARGRQKRLRAETHRVNCIERAFGTLLAEDRRLAALLDV
PRCDLAVFSAESTELWARFSDKATPLLQTVGSAADAADANIAAAAAARIT
LEEEVKAVHQSLDGHRAAARGRQERAAEVEGARMTARATAAAAVG
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mRNA from alignment at P-wetherbeei_contig6699:929..1665-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6699.1.1 ID=mRNA_P-wetherbeei_contig6699.1.1|Name=mRNA_P-wetherbeei_contig6699.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=737bp|location=Sequence derived from alignment at P-wetherbeei_contig6699:929..1665- (Phaeothamnion wetherbeei SAG_119_79)
AAAAAACCGAGGTGGGAACGAAGCGAAGGGCAAAACGGAAGCACCATGGC
TTGCGTGACGGTCCCGAAGCGCAAGTTCGCCGTGGCACCCAGCGAGGTAC
AACGAGCCCCGGCGAGCCGCGCTTCCGTGGCGGCCATGCAGAAGAAGGCA
CGCACCGGCACCAAGATCGCCGACAGCGTGCGCGAGGTTGTGAACCTGTT
CCAGGTCGAGCACGCGAAAGTTCATGATCAGGCGGCGCGGCTCCGTCACC
AGTTGAAGGAGCGGCAGCAGCAGCTCGCCGTGGTGCGCGGGCACCTGTCG
CGTGAGTCAAGCGAGAACGGCACCCTCGAGGCCACCGCGCGCGGCAGGCA
GAAGCGCCTGCGCGCCGAGACACATCGGGTCAACTGCATCGAGCGCGCCT
TTGGCACCCTCCTCGCGGAGGACCGCCGCCTGGCCGCCCTGTTGGACGTG
CCGCGTTGTGACCTCGCCGTCTTTTCCGCCGAATCGACCGAGCTCTGGGC
CCGCTTCAGCGACAAGGCGACCCCGCTCTTGCAGACCGTCGGCTCAGCGG
CCGACGCCGCCGACGCCAACATTGCAGCAGCCGCAGCGGCGCGTATCACC
CTTGAAGAGGAGGTCAAGGCGGTGCACCAGTCGCTCGACGGCCACCGCGC
CGCCGCGCGCGGCCGGCAGGAGCGCGCCGCGGAAGTCGAGGGCGCCCGCA
TGACAGCCCGTGCCACCGCGGCCGCCGCGGTGGGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6699:929..1665-

>mRNA_P-wetherbeei_contig6699.1.1 ID=mRNA_P-wetherbeei_contig6699.1.1|Name=mRNA_P-wetherbeei_contig6699.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=735bp|location=Sequence derived from alignment at P-wetherbeei_contig6699:929..1665- (Phaeothamnion wetherbeei SAG_119_79)
AAAAAACCGAGGTGGGAACGAAGCGAAGGGCAAAACGGAAGCACCATGGC
TTGCGTGACGGTCCCGAAGCGCAAGTTCGCCGTGGCACCCAGCGAGGTAC
AACGAGCCCCGGCGAGCCGCGCTTCCGTGGCGGCCATGCAGAAGAAGGCA
CGCACCGGCACCAAGATCGCCGACAGCGTGCGCGAGGTTGTGAACCTGTT
CCAGGTCGAGCACGCGAAAGTTCATGATCAGGCGGCGCGGCTCCGTCACC
AGTTGAAGGAGCGGCAGCAGCAGCTCGCCGTGGTGCGCGGGCACCTGTCG
CGTGAGTCAAGCGAGAACGGCACCCTCGAGGCCACCGCGCGCGGCAGGCA
GAAGCGCCTGCGCGCCGAGACACATCGGGTCAACTGCATCGAGCGCGCCT
TTGGCACCCTCCTCGCGGAGGACCGCCGCCTGGCCGCCCTGTTGGACGTG
CCGCGTTGTGACCTCGCCGTCTTTTCCGCCGAATCGACCGAGCTCTGGGC
CCGCTTCAGCGACAAGGCGACCCCGCTCTTGCAGACCGTCGGCTCAGCGG
CCGACGCCGCCGACGCCAACATTGCAGCAGCCGCAGCGGCGCGTATCACC
CTTGAAGAGGAGGTCAAGGCGGTGCACCAGTCGCTCGACGGCCACCGCGC
CGCCGCGCGCGGCCGGCAGGAGCGCGCCGCGGAAGTCGAGGGCGCCCGCA
TGACAGCCCGTGCCACCGCGGCCGCCGCGGTGGGC
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