mRNA_P-wetherbeei_contig6696.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6696.1.1
Unique NamemRNA_P-wetherbeei_contig6696.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6696.1.1 vs. uniprot
Match: A0A7S2I4H6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I4H6_9STRA)

HSP 1 Score: 187 bits (476), Expect = 3.980e-58
Identity = 90/109 (82.57%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:   19 REVYKFATREVPAVLNEALGNAGLSTNDVDWLLLHQANIRIMEAVAQRMGLPMDKVVTNLAEYGNTSAASIPLALDEAVRSGKVKKGDIIACAGFGAGLSWGSAIIRWG 345
            +EVYKFATREVP VL EAL  AG++ ++VDWLLLHQANIRIM+ VA+R+G+PMDKV+TNLA YGNTSAASIPLALDEAVR+G+VKKGDIIACAGFGAGLSWGSAIIRWG
Sbjct:  118 KEVYKFATREVPTVLEEALDAAGMTVDEVDWLLLHQANIRIMQTVAKRLGMPMDKVITNLANYGNTSAASIPLALDEAVRTGQVKKGDIIACAGFGAGLSWGSAIIRWG 226
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BLAST of mRNA_P-wetherbeei_contig6696.1.1 vs. uniprot
Match: D8LRQ3_ECTSI (Beta-ketoacyl-[acyl-carrier-protein] synthase III n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ3_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 5.700e-58
Identity = 93/110 (84.55%), Postives = 99/110 (90.00%), Query Frame = 1 
Query:   19 REVYKFATREVPAVLNEALGNAGLSTNDVDWLLLHQANIRIMEAVAQRMGLPMDKVVTNLAEYGNTSAASIPLALDEAVRSGKVKKGDIIACAGFGAGLSWGSAIIRWGG 348
            REVYKFATREVP VL EAL NAG+   DVDWLLLHQANIRIME VA R+GLPMDKV+TNLAEYGNTSA SIPLALDEAVRSGKVK GD+IACAGFGAGLSWG+A+IRW G
Sbjct:  293 REVYKFATREVPRVLTEALDNAGMGVEDVDWLLLHQANIRIMETVASRLGLPMDKVITNLAEYGNTSAGSIPLALDEAVRSGKVKSGDVIACAGFGAGLSWGAAVIRWSG 402
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BLAST of mRNA_P-wetherbeei_contig6696.1.1 vs. uniprot
Match: A0A836CD86_9STRA (Beta-ketoacyl-[acyl-carrier-protein] synthase III n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD86_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.280e-57
Identity = 94/109 (86.24%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:   19 REVYKFATREVPAVLNEALGNAGLSTNDVDWLLLHQANIRIMEAVAQRMGLPMDKVVTNLAEYGNTSAASIPLALDEAVRSGKVKKGDIIACAGFGAGLSWGSAIIRWG 345
            REVYKFATREVPAVL EAL NAGL   DVD+LLLHQANIRIMEAVAQR+G+ MDKV+TNL+EYGNTSAASIPLALDEAVRSGKVKKGD+IACAGFGAGLSWG+AI++WG
Sbjct:  270 REVYKFATREVPAVLLEALDNAGLGVEDVDFLLLHQANIRIMEAVAQRLGMSMDKVITNLSEYGNTSAASIPLALDEAVRSGKVKKGDVIACAGFGAGLSWGAAILKWG 378
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BLAST of mRNA_P-wetherbeei_contig6696.1.1 vs. uniprot
Match: A0A7S2XSK8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSK8_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.280e-57
Identity = 91/108 (84.26%), Postives = 100/108 (92.59%), Query Frame = 1 
Query:   19 REVYKFATREVPAVLNEALGNAGLSTNDVDWLLLHQANIRIMEAVAQRMGLPMDKVVTNLAEYGNTSAASIPLALDEAVRSGKVKKGDIIACAGFGAGLSWGSAIIRW 342
            REVYKFATREVP VL EAL  AGL+ +DVDWLLLHQANIRIME VA R+G+PM+KV+TNL++YGNTSAASIPLALDEAVR G+VKKGDIIACAGFGAGLSWGSAIIRW
Sbjct:  157 REVYKFATREVPTVLKEALDAAGLTVDDVDWLLLHQANIRIMETVANRLGMPMEKVITNLSDYGNTSAASIPLALDEAVRKGQVKKGDIIACAGFGAGLSWGSAIIRW 264
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BLAST of mRNA_P-wetherbeei_contig6696.1.1 vs. uniprot
Match: A0A7S1ZE37_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZE37_TRICV)

HSP 1 Score: 189 bits (480), Expect = 1.290e-57
Identity = 91/110 (82.73%), Postives = 100/110 (90.91%), Query Frame = 1 
Query:   19 REVYKFATREVPAVLNEALGNAGLSTNDVDWLLLHQANIRIMEAVAQRMGLPMDKVVTNLAEYGNTSAASIPLALDEAVRSGKVKKGDIIACAGFGAGLSWGSAIIRWGG 348
            REVYKFATREVP VL EAL  A +S +DVDWLLLHQANIRIME VA R+G+PM+KV+TNLA+YGNTSA SIP+ALDEAVRSGKVKKGD+IACAGFGAGLSWGSAI RWGG
Sbjct:  201 REVYKFATREVPRVLTEALDAASMSVDDVDWLLLHQANIRIMETVASRLGIPMEKVITNLADYGNTSAGSIPIALDEAVRSGKVKKGDVIACAGFGAGLSWGSAIFRWGG 310
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BLAST of mRNA_P-wetherbeei_contig6696.1.1 vs. uniprot
Match: A0A7S2P7H9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7H9_9STRA)

HSP 1 Score: 184 bits (468), Expect = 4.790e-57
Identity = 87/110 (79.09%), Postives = 101/110 (91.82%), Query Frame = 1 
Query:   19 REVYKFATREVPAVLNEALGNAGLSTNDVDWLLLHQANIRIMEAVAQRMGLPMDKVVTNLAEYGNTSAASIPLALDEAVRSGKVKKGDIIACAGFGAGLSWGSAIIRWGG 348
            ++VYKFATREVP V+ EAL  A +  +DVDWLLLHQANIRIME VA R+G+PM+KV+TNLA+YGNTSAASIPLALDEAVRSGKVKKGD++ACAGFGAGLSWGSAI++WGG
Sbjct:  103 KDVYKFATREVPVVIKEALDAAEMGVDDVDWLLLHQANIRIMETVANRLGVPMEKVLTNLADYGNTSAASIPLALDEAVRSGKVKKGDVVACAGFGAGLSWGSAILKWGG 212
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BLAST of mRNA_P-wetherbeei_contig6696.1.1 vs. uniprot
Match: A0A7S2MXG7_9STRA (Beta-ketoacyl-[acyl-carrier-protein] synthase III n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MXG7_9STRA)

HSP 1 Score: 187 bits (476), Expect = 5.400e-56
Identity = 90/109 (82.57%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:   19 REVYKFATREVPAVLNEALGNAGLSTNDVDWLLLHQANIRIMEAVAQRMGLPMDKVVTNLAEYGNTSAASIPLALDEAVRSGKVKKGDIIACAGFGAGLSWGSAIIRWG 345
            +EVYKFATREVP VL EAL  AG++ ++VDWLLLHQANIRIM+ VA+R+G+PMDKV+TNLA YGNTSAASIPLALDEAVR+G+VKKGDIIACAGFGAGLSWGSAIIRWG
Sbjct:  297 KEVYKFATREVPTVLEEALDAAGMTVDEVDWLLLHQANIRIMQTVAKRLGMPMDKVITNLANYGNTSAASIPLALDEAVRTGQVKKGDIIACAGFGAGLSWGSAIIRWG 405
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BLAST of mRNA_P-wetherbeei_contig6696.1.1 vs. uniprot
Match: A0A7S0LU44_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LU44_9CRYP)

HSP 1 Score: 179 bits (454), Expect = 5.670e-56
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:   19 REVYKFATREVPAVLNEALGNAGLSTNDVDWLLLHQANIRIMEAVAQRMGLPMDKVVTNLAEYGNTSAASIPLALDEAVRSGKVKKGDIIACAGFGAGLSWGSAIIRWG 345
            +EVYKFATREVP VL EAL NAGL  + VDWLLLHQANIRIME VA R+G+PMDKV+ NL EYGNTSAASIPL L EAV SGKVKKGD+IACAGFGAGLSWG+ I+RWG
Sbjct:   31 KEVYKFATREVPRVLEEALANAGLDVSQVDWLLLHQANIRIMEVVADRLGMPMDKVLHNLEEYGNTSAASIPLCLAEAVASGKVKKGDVIACAGFGAGLSWGATIMRWG 139
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BLAST of mRNA_P-wetherbeei_contig6696.1.1 vs. uniprot
Match: A0A7S2B1A0_9STRA (Beta-ketoacyl-[acyl-carrier-protein] synthase III n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B1A0_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.750e-55
Identity = 89/109 (81.65%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:   19 REVYKFATREVPAVLNEALGNAGLSTNDVDWLLLHQANIRIMEAVAQRMGLPMDKVVTNLAEYGNTSAASIPLALDEAVRSGKVKKGDIIACAGFGAGLSWGSAIIRWG 345
            REVYKFATREVP VLNEA+ NAGL+ +DVDWL+LHQANIRIME VA R+G+PMDKV+TNL+E+GNTSA SIP+AL+EAVR+GKVKKGD+IA AGFGAGLSWGSAIIRWG
Sbjct:  318 REVYKFATREVPNVLNEAIANAGLTVDDVDWLVLHQANIRIMEIVASRLGIPMDKVITNLSEHGNTSAGSIPIALEEAVRTGKVKKGDVIAMAGFGAGLSWGSAIIRWG 426
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BLAST of mRNA_P-wetherbeei_contig6696.1.1 vs. uniprot
Match: A0A7S2X9F9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X9F9_9EUKA)

HSP 1 Score: 177 bits (449), Expect = 2.230e-55
Identity = 83/110 (75.45%), Postives = 101/110 (91.82%), Query Frame = 1 
Query:   19 REVYKFATREVPAVLNEALGNAGLSTNDVDWLLLHQANIRIMEAVAQRMGLPMDKVVTNLAEYGNTSAASIPLALDEAVRSGKVKKGDIIACAGFGAGLSWGSAIIRWGG 348
            +EVYKFAT EVP V+NEALGNAGL+T D+D++LLHQANIRIME VA+++GL MD+V+ N+ EYGNTSA S+PLALDEAVRSGKVK+GD+IA AGFGAGLSWG++I+RWGG
Sbjct:    4 KEVYKFATSEVPRVINEALGNAGLTTEDIDYILLHQANIRIMEVVAKKLGLSMDQVIRNIDEYGNTSAGSMPLALDEAVRSGKVKEGDVIAFAGFGAGLSWGASIVRWGG 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6696.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2I4H6_9STRA3.980e-5882.57Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
D8LRQ3_ECTSI5.700e-5884.55Beta-ketoacyl-[acyl-carrier-protein] synthase III ... [more]
A0A836CD86_9STRA1.280e-5786.24Beta-ketoacyl-[acyl-carrier-protein] synthase III ... [more]
A0A7S2XSK8_9STRA1.280e-5784.26Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1ZE37_TRICV1.290e-5782.73Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2P7H9_9STRA4.790e-5779.09Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2MXG7_9STRA5.400e-5682.57Beta-ketoacyl-[acyl-carrier-protein] synthase III ... [more]
A0A7S0LU44_9CRYP5.670e-5679.82Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S2B1A0_9STRA1.750e-5581.65Beta-ketoacyl-[acyl-carrier-protein] synthase III ... [more]
A0A7S2X9F9_9EUKA2.230e-5575.45Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6696contigP-wetherbeei_contig6696:137..870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog55529.EKX48209
PFAMsACP_syn_III,ACP_syn_III_C
Model size351
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02729,RC02888
KEGG koko:K00648
KEGG ReactionR10707
KEGG Pathwayko00061,ko01100,ko01212,map00061,map01100,map01212
KEGG ModuleM00082,M00083
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons3
Evalue9.07e-56
EggNOG OGsCOG0332@1|root,2QUK2@2759|Eukaryota
Ec32 ortholog descriptionbeta-ketoacyl synthase
Ec32 orthologEc-12_000650.1
EC2.3.1.180
Descriptionbeta-ketoacyl-acyl-carrier-protein synthase III activity
Cds size351
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.5442674-CDS-P-wetherbeei_contig6696:136..2621683186930.5442674-CDS-P-wetherbeei_contig6696:136..262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6696 137..262 +
1683186930.5552912-CDS-P-wetherbeei_contig6696:442..4991683186930.5552912-CDS-P-wetherbeei_contig6696:442..499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6696 443..499 +
1683186930.5636227-CDS-P-wetherbeei_contig6696:702..8701683186930.5636227-CDS-P-wetherbeei_contig6696:702..870Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6696 703..870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6696.1.1prot_P-wetherbeei_contig6696.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6696 137..870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6696.1.1

>prot_P-wetherbeei_contig6696.1.1 ID=prot_P-wetherbeei_contig6696.1.1|Name=mRNA_P-wetherbeei_contig6696.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
MLCIFCREVYKFATREVPAVLNEALGNAGLSTNDVDWLLLHQANIRIMEA
VAQRMGLPMDKVVTNLAEYGNTSAASIPLALDEAVRSGKVKKGDIIACAG
FGAGLSWGSAIIRWGG*
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mRNA from alignment at P-wetherbeei_contig6696:137..870+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6696.1.1 ID=mRNA_P-wetherbeei_contig6696.1.1|Name=mRNA_P-wetherbeei_contig6696.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=734bp|location=Sequence derived from alignment at P-wetherbeei_contig6696:137..870+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGTGTATTTTCTGCAGGGAAGTGTACAAGTTTGCGACGCGCGAGGT
GCCGGCGGTGCTGAATGAGGCGCTAGGGAACGCGGGGCTCAGTACCAACG
ACGTGGACTGGCTCCTGCTCCACCAGGTTAGCCAGTTCTTCTCTTTCCGT
TTCCTGCACTTACATCCTTCTTCCTGTTTTCTGCACCCTTATGTGTTTCT
GTGTGTTAACATGGTCCGCCTTACTCTCTTTGCTAGCATTGGCCGGCATG
AAGAACTCTTGCTGCTTCCTCGTGCTCGGCGGTTCATGCGTCACTGTCCG
TTGCAGGCCAACATCCGCATAATGGAGGCCGTGGCGCAGCGAATGGGACT
TCCAATGGACAAGGTAAGCATATGAATTACCACCGCTGCAACTGCTAACG
GCATGTCAGGTCGGCTGAAGAATCAAATGACAAATACCCCTTCCTGAAGA
AATCAATGCGTCCAGAGTTTCATGCACTGCAGGAGTACCTTGTCTTGTGG
TCGTCCGATGTTGAAGAATTTGGCCGCGCCTTGTTAAGTGCTTTTCCCTT
TCCGACCTCGACTCAGGTGGTAACAAATTTGGCCGAGTACGGGAACACAA
GCGCCGCCTCCATCCCGCTGGCGCTGGATGAGGCGGTGCGCAGCGGGAAG
GTTAAGAAGGGCGACATTATCGCCTGCGCCGGCTTCGGCGCCGGCCTTAG
CTGGGGCTCTGCCATCATCCGGTGGGGCGGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6696:137..870+

>mRNA_P-wetherbeei_contig6696.1.1 ID=mRNA_P-wetherbeei_contig6696.1.1|Name=mRNA_P-wetherbeei_contig6696.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig6696:137..870+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGTGTATTTTCTGCAGGGAAGTGTACAAGTTTGCGACGCGCGAGGT
GCCGGCGGTGCTGAATGAGGCGCTAGGGAACGCGGGGCTCAGTACCAACG
ACGTGGACTGGCTCCTGCTCCACCAGGCCAACATCCGCATAATGGAGGCC
GTGGCGCAGCGAATGGGACTTCCAATGGACAAGGTGGTAACAAATTTGGC
CGAGTACGGGAACACAAGCGCCGCCTCCATCCCGCTGGCGCTGGATGAGG
CGGTGCGCAGCGGGAAGGTTAAGAAGGGCGACATTATCGCCTGCGCCGGC
TTCGGCGCCGGCCTTAGCTGGGGCTCTGCCATCATCCGGTGGGGCGGATG
A
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