mRNA_P-wetherbeei_contig6693.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6693.3.1
Unique NamemRNA_P-wetherbeei_contig6693.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6693.3.1 vs. uniprot
Match: A0A835YU05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU05_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.650e-23
Identity = 48/124 (38.71%), Postives = 67/124 (54.03%), Query Frame = 1
Query:   10 RWARFVVFGL-LDGSANHVWYHAIAGTITGSSILTVLTKMAVDSTFYTPTYCFLFLSLMTFAEGGRLGEITDRLRRDFKQMVVSTWGIWVPSNAIIYGMVPLEQQVLASCVVAFCYTIALSLWE 378
            RWA   +FG  +DG+  H+WY  +   I G + L    K   D+  Y+P YC LFL      EG  L      +R  +  M+ +T   W+P+N +IYG VPLE +VLASC +   YT  LS+W+
Sbjct: 2010 RWANRALFGACVDGALGHLWYAQLDALIAGDTALAAAAKTLADAALYSPAYCLLFLGGTALLEGAGLRATAAHVRGGYSAMLAATVAAWLPANVLIYGAVPLEYRVLASCAMLVAYTFGLSVWD 2133          
BLAST of mRNA_P-wetherbeei_contig6693.3.1 vs. uniprot
Match: A0A7S3BXR9_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BXR9_9VIRI)

HSP 1 Score: 57.8 bits (138), Expect = 2.980e-8
Identity = 30/93 (32.26%), Postives = 46/93 (49.46%), Query Frame = 1
Query:  124 MAVDSTFYTPTYCFLFLSLMTFAEGG--------RLGEITDRLRRDFKQMVVSTWGIWVPSNAIIYGMVPLEQQVLASCVVAFCYTIALSLWE 378
            +  D   +TP +C  FL  M     G          G    R++ D+ ++       W+P NA+IYG+VPL+++VLA  V    YT+ LS W+
Sbjct:    1 VVADFVCFTPLWCAAFLFCMEAMRSGFRQTTIGFGAGLAAARVKADWLELYTGNVAAWLPINALIYGVVPLQRRVLAFSVATLLYTLVLSAWD 93          
BLAST of mRNA_P-wetherbeei_contig6693.3.1 vs. uniprot
Match: UPI000625830F (protein Mpv17 isoform X1 n=3 Tax=Orussus abietinus TaxID=222816 RepID=UPI000625830F)

HSP 1 Score: 58.2 bits (139), Expect = 7.430e-8
Identity = 32/113 (28.32%), Postives = 55/113 (48.67%), Query Frame = 1
Query:   10 RWARFVVFGL-LDGSANHVWYHAIAGTITGSSILTVLTKMAVDSTFYTPTYCFLFLSLMTFAEGGRLGEITDRLRRDFKQMVVSTWGIWVPSNAIIYGMVPLEQQVLASCVVA 345
            R A+F   G  L G A   WY  +   I       +L K+  D  F+ P    + L+ + F  G  L +  ++LR ++K ++++ + +W     + + +VPLE QVL   +VA
Sbjct:   59 RTAQFGGLGFFLMGPAIRTWYGILDKRIGSKGKTVILKKVVCDQLFFAPALIAVLLNSIGFLRGNNLEQNKEKLRNEYKDILINNYKLWPMVQIVNFSLVPLEYQVLVVQIVA 171          
BLAST of mRNA_P-wetherbeei_contig6693.3.1 vs. uniprot
Match: M2X182_GALSU (Peroxisomal membrane MPV17/PMP22-like protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X182_GALSU)

HSP 1 Score: 55.8 bits (133), Expect = 5.250e-7
Identity = 32/122 (26.23%), Postives = 60/122 (49.18%), Query Frame = 1
Query:    7 ERWARFVVFGLLD-GSANHVWYHAIAGTITGSSILTVLTKMAVDSTFYTPTYCFLFLSLMTFAEGGRLGEITDRLRRDFKQMVVSTWGIWVPSNAIIYGMVPLEQQVLASCVVAFCYTIALS 369
            +R  RF  FGLL  G   H WY  +      ++  ++++K+ VD T +TP       S ++  EG     +  ++++DF   + + W +W+P+  I +   P + +VL    VA  + + L+
Sbjct:   44 QRTLRFTSFGLLIFGPCAHYWYRLLDHWFPKATTRSLISKVLVDQTLFTPVAIVSVFSYVSLLEGHPFVAV-QKVKQDFWTTLKANWALWLPAQTINFRFTPPDYRVLFVNSVALIWNVYLA 164          
BLAST of mRNA_P-wetherbeei_contig6693.3.1 vs. uniprot
Match: A0A6A6HBQ1_9PEZI (Uncharacterized protein n=1 Tax=Viridothelium virens TaxID=1048519 RepID=A0A6A6HBQ1_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 5.320e-7
Identity = 39/124 (31.45%), Postives = 62/124 (50.00%), Query Frame = 1
Query:   10 RWARFVVFG-LLDGSANHVWYHAIAGTITGSSI--LTVLTKMAVDSTFYTPTYCFLFLSLMTFAEGGRLGEITDRLRRDFKQMVVSTWGIWVPSNAIIYGMVPLEQQVLASCVVAFCYTIALSL 372
            R AR  ++G  + G A  +WY  +   I   +   L +L ++  D   + PT   +FLS MTF EGG +G    +LR  +  +V   W +W     + + +VPL+ +VL   VV+  +   LSL
Sbjct:   48 RTARMTLYGGAIFGPAATLWYSFLQRRIHFPTRPNLQILAQVGCDQCIFAPTNAAVFLSSMTFLEGGDVGA---KLRSTWGTVVAMNWVVWPWVQGVNFKLVPLQHRVLVVNVVSLGWNCYLSL 168          
BLAST of mRNA_P-wetherbeei_contig6693.3.1 vs. uniprot
Match: UPI000854DD9D (protein Mpv17 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854DD9D)

HSP 1 Score: 54.3 bits (129), Expect = 6.040e-7
Identity = 29/105 (27.62%), Postives = 52/105 (49.52%), Query Frame = 1
Query:   64 WYHAIAGTITGSSILTVLTKMAVDSTFYTPTYCFLFLSLMTFAEGGRLGEITDRLRRDFKQMVVSTWGIWVPSNAIIYGMVPLEQQVLASCVVAFCYTIALSLWE 378
            WY  + G + GSS    L KM +D   ++P +   FL+++    G    EI ++L+RD+K  +++ + IW       +  +PL  ++     VA  +   LS W+
Sbjct:    7 WYKVLEGLVPGSSKSVALKKMLLDQVGFSPCFLGCFLTIVGSLNGLSKAEIWEKLKRDYKDALITNYYIWPAVQIANFYFIPLYHRLAVVQCVAIIWNAYLS-WK 110          
BLAST of mRNA_P-wetherbeei_contig6693.3.1 vs. uniprot
Match: A0A1X6P0N1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0N1_PORUM)

HSP 1 Score: 55.5 bits (132), Expect = 1.840e-6
Identity = 29/111 (26.13%), Postives = 52/111 (46.85%), Query Frame = 1
Query:   37 LLDGSANHVWYHAIAGTITGSSILTVLTKMAVDSTFYTPTYCFLFLSLMTFAEGGRLGEITDRLRRDFKQMVVSTWGIWVPSNAIIYGMVPLEQQVLASCVVAFCYTIALS 369
            +  G   H WY  +     G     V + +  D + + P    ++L      EGG + ++T ++R  F  +   +  +WVP+ A+ +G+VPL  +V     VA  +T+ LS
Sbjct:  200 VFTGPMLHGWYETLGRVFPGGGWAAVASSVVADQSLFAPLVNGVYLMATGLMEGGGVDDVTAKVRGGFGDVWRKSIAVWVPAQAVNFGLVPLVWRVPYVNGVALLWTVLLS 310          
BLAST of mRNA_P-wetherbeei_contig6693.3.1 vs. uniprot
Match: A0A8J6JRM7_ELECQ (Uncharacterized protein n=2 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6JRM7_ELECQ)

HSP 1 Score: 54.7 bits (130), Expect = 1.980e-6
Identity = 30/105 (28.57%), Postives = 53/105 (50.48%), Query Frame = 1
Query:   64 WYHAIAGTITGSSILTVLTKMAVDSTFYTPTYCFLFLSLMTFAEGGRLGEITDRLRRDFKQMVVSTWGIWVPSNAIIYGMVPLEQQVLASCVVAFCYTIALSLWE 378
            WY  + G ++GSS    + KM +D   + P +   FL+++    G    EI D+L+RD+K  +++ + IW       +  +PL  ++    VVA  +   LS W+
Sbjct:  105 WYKVLDGLVSGSSKSVAVKKMLLDQGGFAPCFLGGFLTIVGSLNGLSKEEIWDKLKRDYKDALITNYYIWPAVQIANFYFIPLHHRLAVVQVVAIIWNCYLS-WK 208          
BLAST of mRNA_P-wetherbeei_contig6693.3.1 vs. uniprot
Match: A0A6A6JNL3_9PLEO (Uncharacterized protein n=1 Tax=Westerdykella ornata TaxID=318751 RepID=A0A6A6JNL3_9PLEO)

HSP 1 Score: 52.8 bits (125), Expect = 6.160e-6
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 1
Query:   34 GLLDGSANHVWYHAIAGTITGSSI-LTVLTKMAVDSTFYTPTYCFLFLSLMTFAEGGRLGEITDRLRRDFKQMVVSTWGIWVPSNAIIYGMVPLEQQVLA-SCVVAFCYTIALSLWE 378
            GL+ G A   WY  +   IT SS   ++  ++A D   + P    LFLS M++ EGG   +  ++LRR +    V+   +W    A+ + +VPLE +VL  +CV       AL  WE
Sbjct:   58 GLIFGPAATHWYRILNSRITLSSAPRSIAARIAADQFVFAPVNLALFLSSMSYLEGG---DPKEKLRRAWLPGYVNNCLLWPWVQAVNFSVVPLEHRVLVVNCV-------ALGEWE 164          
BLAST of mRNA_P-wetherbeei_contig6693.3.1 vs. uniprot
Match: UPI001B7DF3A1 (protein Mpv17 isoform X1 n=2 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7DF3A1)

HSP 1 Score: 52.0 bits (123), Expect = 1.330e-5
Identity = 35/122 (28.69%), Postives = 56/122 (45.90%), Query Frame = 1
Query:    7 ERWARFVVFGLLD-GSANHVWYHAIAGTITGSSILTVLTKMAVDSTFYTPTYCFLFLSLMTFAEGGRLGEITDRLRRDFKQMVVSTWGIWVPSNAIIYGMVPLEQQVLASCVVAFCYTIALS 369
            +R  R  + GL+  G    VWY  +   I G S    L KM +D     P +   FL++  F  G    E+  +L++D+K  +VS + IW     + +  VPL  ++    +VA  +   LS
Sbjct:   50 KRTIRMTIVGLIYVGPVLGVWYKFLDQIIIGKSKTVALKKMLLDQFALAPCFLACFLAVAGFLGGHSREEVWLKLKKDYKDTLVSNYFIWPAVQVLNFYFVPLVYRLPLIQIVALMWNTYLS 171          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6693.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835YU05_9STRA8.650e-2338.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3BXR9_9VIRI2.980e-832.26Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
UPI000625830F7.430e-828.32protein Mpv17 isoform X1 n=3 Tax=Orussus abietinus... [more]
M2X182_GALSU5.250e-726.23Peroxisomal membrane MPV17/PMP22-like protein n=1 ... [more]
A0A6A6HBQ1_9PEZI5.320e-731.45Uncharacterized protein n=1 Tax=Viridothelium vire... [more]
UPI000854DD9D6.040e-727.62protein Mpv17 n=1 Tax=Nanorana parkeri TaxID=12587... [more]
A0A1X6P0N1_PORUM1.840e-626.13Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A8J6JRM7_ELECQ1.980e-628.57Uncharacterized protein n=2 Tax=Eleutherodactylus ... [more]
A0A6A6JNL3_9PLEO6.160e-633.33Uncharacterized protein n=1 Tax=Westerdykella orna... [more]
UPI001B7DF3A11.330e-528.69protein Mpv17 isoform X1 n=2 Tax=Carcharodon carch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6693contigP-wetherbeei_contig6693:2554..3284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog55529.EKX33522
PFAMsMpv17_PMP22
Model size378
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.5e-22
EggNOG OGs2EXHP@1|root,2SZ6A@2759|Eukaryota
DescriptionMpv17 / PMP22 family
Cds size378
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.3937929-CDS-P-wetherbeei_contig6693:2553..26101683186930.3937929-CDS-P-wetherbeei_contig6693:2553..2610Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6693 2554..2610 -
1683186930.4044454-CDS-P-wetherbeei_contig6693:2825..29851683186930.4044454-CDS-P-wetherbeei_contig6693:2825..2985Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6693 2826..2985 -
1683186930.4166036-CDS-P-wetherbeei_contig6693:3123..32841683186930.4166036-CDS-P-wetherbeei_contig6693:3123..3284Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6693 3124..3284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6693.3.1prot_P-wetherbeei_contig6693.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6693 2554..3284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6693.3.1

>prot_P-wetherbeei_contig6693.3.1 ID=prot_P-wetherbeei_contig6693.3.1|Name=mRNA_P-wetherbeei_contig6693.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
QPERWARFVVFGLLDGSANHVWYHAIAGTITGSSILTVLTKMAVDSTFYT
PTYCFLFLSLMTFAEGGRLGEITDRLRRDFKQMVVSTWGIWVPSNAIIYG
MVPLEQQVLASCVVAFCYTIALSLWE
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mRNA from alignment at P-wetherbeei_contig6693:2554..3284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6693.3.1 ID=mRNA_P-wetherbeei_contig6693.3.1|Name=mRNA_P-wetherbeei_contig6693.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=731bp|location=Sequence derived from alignment at P-wetherbeei_contig6693:2554..3284- (Phaeothamnion wetherbeei SAG_119_79)
CAACCTGAGCGTTGGGCCCGCTTCGTCGTTTTCGGCCTTCTGGACGGATC GGCAAACCACGTTTGGTATCACGCAATCGCGGGGACCATCACGGGGAGCT CCATCCTTACGGTCCTCACCAAAATGGCCGTTGACTCGACGTTCTACACG CCGACCTACTGGTGAGCTAACCGTTCTGCTCTCCCTCCACTTCTCGGCAG GCCTTAGTTGCCCGCAACTAATGTTCCCTTGCTTCATGCTGACAGTTTTT GAAATGTTGACATTCGCTGTGCTCCCCTCCTTTTTCCCCCAAACCACAGC TTCCTGTTCCTGTCGCTGATGACGTTTGCCGAGGGCGGCCGCCTGGGCGA GATCACTGACCGGCTCCGGAGGGACTTCAAACAGATGGTCGTCTCTACGT GGGGCATCTGGGTACCGAGCAATGCCATCATCTACGGCATGGTGCCGCTC GAGCAGCAGGTGAGGACAATGGCGGGAGGCGAGAGAGCGGCCTGCCCGCC TTTCTTTTCGGTGGTACATCTAGGGAAGTAAACCTGATGGATGCTGTTGG CAACCAAATGAAATCCGATTCCCTCCTTCGCTCTCTTTCTCTTCATATTG CTACAATCGTGGTGGCATCAACGTCTAACCGAATCTCATTCCTTCATTCT CCTCATCCTCTCCGCTTCGCTCAGGTGCTCGCGTCGTGCGTGGTGGCGTT CTGCTATACCATCGCGCTCTCGCTGTGGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6693:2554..3284-

>mRNA_P-wetherbeei_contig6693.3.1 ID=mRNA_P-wetherbeei_contig6693.3.1|Name=mRNA_P-wetherbeei_contig6693.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig6693:2554..3284- (Phaeothamnion wetherbeei SAG_119_79)
CAACCTGAGCGTTGGGCCCGCTTCGTCGTTTTCGGCCTTCTGGACGGATC
GGCAAACCACGTTTGGTATCACGCAATCGCGGGGACCATCACGGGGAGCT
CCATCCTTACGGTCCTCACCAAAATGGCCGTTGACTCGACGTTCTACACG
CCGACCTACTGCTTCCTGTTCCTGTCGCTGATGACGTTTGCCGAGGGCGG
CCGCCTGGGCGAGATCACTGACCGGCTCCGGAGGGACTTCAAACAGATGG
TCGTCTCTACGTGGGGCATCTGGGTACCGAGCAATGCCATCATCTACGGC
ATGGTGCCGCTCGAGCAGCAGGTGCTCGCGTCGTGCGTGGTGGCGTTCTG
CTATACCATCGCGCTCTCGCTGTGGGAG
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