mRNA_P-wetherbeei_contig6692.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6692.2.1
Unique NamemRNA_P-wetherbeei_contig6692.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6692.2.1 vs. uniprot
Match: A0A662XM65_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XM65_9STRA)

HSP 1 Score: 117 bits (292), Expect = 6.080e-29
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 RSMMRLFRLVGRCVSHSEPVLLVGDTGCGKTTVCQLFALLMGRPLHIINCHLHTEASDLLGGLRPLRG 204
            +S+ RLF LVGRC+ H EPVLLVG+TGCGKTTVCQL++LL G+PLHI+NCH HTE SD LG LRP+RG
Sbjct:  426 KSLRRLFALVGRCLQHEEPVLLVGETGCGKTTVCQLYSLLFGQPLHILNCHQHTETSDFLGCLRPVRG 493
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BLAST of mRNA_P-wetherbeei_contig6692.2.1 vs. uniprot
Match: A0A8K1FNU7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNU7_PYTOL)

HSP 1 Score: 114 bits (285), Expect = 5.370e-28
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 RSMMRLFRLVGRCVSHSEPVLLVGDTGCGKTTVCQLFALLMGRPLHIINCHLHTEASDLLGGLRPLRG 204
            +++ RLF LVGRC+ H EPVLLVG+TGCGKTTVCQL++LL  +PLHIINCH HTE SD LG LRP+RG
Sbjct: 1464 KALRRLFALVGRCLQHEEPVLLVGETGCGKTTVCQLYSLLFNQPLHIINCHQHTETSDFLGCLRPVRG 1531
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BLAST of mRNA_P-wetherbeei_contig6692.2.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.000e-27
Identity = 49/68 (72.06%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 RSMMRLFRLVGRCVSHSEPVLLVGDTGCGKTTVCQLFALLMGRPLHIINCHLHTEASDLLGGLRPLRG 204
            R M RLFRL GRC+SH EP+LLVG TGCGKTTVCQL+++L+ R +H++NCH +TEA+DLLGGLRPLRG
Sbjct:  668 RHMRRLFRLSGRCLSHIEPLLLVGATGCGKTTVCQLYSMLLQRRMHVVNCHQNTEAADLLGGLRPLRG 735
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BLAST of mRNA_P-wetherbeei_contig6692.2.1 vs. uniprot
Match: K3X0F1_GLOUD (Midasin n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0F1_GLOUD)

HSP 1 Score: 112 bits (279), Expect = 3.470e-27
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 RSMMRLFRLVGRCVSHSEPVLLVGDTGCGKTTVCQLFALLMGRPLHIINCHLHTEASDLLGGLRPLRG 204
            +S+ RLF LVGRC+ H EPVLLVG+TGCGKTTVCQL++LL+ + LHI+NCH HTE SD LG LRP+RG
Sbjct: 1448 KSLRRLFSLVGRCLQHEEPVLLVGETGCGKTTVCQLYSLLLNQRLHILNCHQHTETSDFLGCLRPVRG 1515
[Close]
BLAST of mRNA_P-wetherbeei_contig6692.2.1 vs. uniprot
Match: A0A421GVK8_9STRA (Midasin n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GVK8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.470e-27
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 RSMMRLFRLVGRCVSHSEPVLLVGDTGCGKTTVCQLFALLMGRPLHIINCHLHTEASDLLGGLRPLRG 204
            +S+ RLF LVGRC+ + EPVLLVG+TGCGKTTVCQL++LL  +PLHI+NCH HTE SD LG LRP+RG
Sbjct: 1452 KSLRRLFALVGRCLQNQEPVLLVGETGCGKTTVCQLYSLLFSQPLHILNCHQHTETSDFLGCLRPVRG 1519
[Close]
BLAST of mRNA_P-wetherbeei_contig6692.2.1 vs. uniprot
Match: A0A225WMG0_9STRA (Midasin-like protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMG0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.470e-27
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 RSMMRLFRLVGRCVSHSEPVLLVGDTGCGKTTVCQLFALLMGRPLHIINCHLHTEASDLLGGLRPLRG 204
            +S+ RLF LVGRC+ + EPVLLVG+TGCGKTTVCQL++LL  +PLHI+NCH HTE SD LG LRP+RG
Sbjct: 1430 KSLRRLFALVGRCLQNEEPVLLVGETGCGKTTVCQLYSLLFSQPLHILNCHQHTETSDFLGCLRPVRG 1497
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BLAST of mRNA_P-wetherbeei_contig6692.2.1 vs. uniprot
Match: W2Q5P2_PHYPN (VWFA domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q5P2_PHYPN)

HSP 1 Score: 112 bits (279), Expect = 3.470e-27
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 RSMMRLFRLVGRCVSHSEPVLLVGDTGCGKTTVCQLFALLMGRPLHIINCHLHTEASDLLGGLRPLRG 204
            +S+ RLF LVGRC+ + EPVLLVG+TGCGKTTVCQL++LL  +PLHI+NCH HTE SD LG LRP+RG
Sbjct: 1463 KSLRRLFALVGRCLQNEEPVLLVGETGCGKTTVCQLYSLLFSQPLHILNCHQHTETSDFLGCLRPVRG 1530
[Close]
BLAST of mRNA_P-wetherbeei_contig6692.2.1 vs. uniprot
Match: A0A3M6VQJ5_9STRA (VWFA domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQJ5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.470e-27
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 RSMMRLFRLVGRCVSHSEPVLLVGDTGCGKTTVCQLFALLMGRPLHIINCHLHTEASDLLGGLRPLRG 204
            +S+ RLF LVGRC+ + EPVLLVG+TGCGKTTVCQL++LL  +PLHI+NCH HTE SD LG LRP+RG
Sbjct: 1458 KSLRRLFALVGRCLQNEEPVLLVGETGCGKTTVCQLYSLLFAQPLHILNCHQHTETSDFLGCLRPVRG 1525
[Close]
BLAST of mRNA_P-wetherbeei_contig6692.2.1 vs. uniprot
Match: H3GJC4_PHYRM (VWFA domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJC4_PHYRM)

HSP 1 Score: 112 bits (279), Expect = 3.470e-27
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 RSMMRLFRLVGRCVSHSEPVLLVGDTGCGKTTVCQLFALLMGRPLHIINCHLHTEASDLLGGLRPLRG 204
            +S+ RLF LVGRC+ + EPVLLVG+TGCGKTTVCQL++LL  +PLHI+NCH HTE SD LG LRP+RG
Sbjct: 1442 KSLRRLFALVGRCLQNEEPVLLVGETGCGKTTVCQLYSLLFSQPLHILNCHQHTETSDFLGCLRPVRG 1509
[Close]
BLAST of mRNA_P-wetherbeei_contig6692.2.1 vs. uniprot
Match: G4ZMS6_PHYSP (VWFA domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4ZMS6_PHYSP)

HSP 1 Score: 112 bits (279), Expect = 3.470e-27
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 RSMMRLFRLVGRCVSHSEPVLLVGDTGCGKTTVCQLFALLMGRPLHIINCHLHTEASDLLGGLRPLRG 204
            +S+ RLF LVGRC+ + EPVLLVG+TGCGKTTVCQL++LL  +PLHI+NCH HTE SD LG LRP+RG
Sbjct: 1459 KSLRRLFALVGRCLQNEEPVLLVGETGCGKTTVCQLYSLLFSQPLHILNCHQHTETSDFLGCLRPVRG 1526
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6692.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A662XM65_9STRA6.080e-2973.53Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A8K1FNU7_PYTOL5.370e-2872.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D7FL28_ECTSI1.000e-2772.06Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
K3X0F1_GLOUD3.470e-2770.59Midasin n=1 Tax=Globisporangium ultimum (strain AT... [more]
A0A421GVK8_9STRA3.470e-2770.59Midasin n=5 Tax=Phytophthora kernoviae TaxID=32545... [more]
A0A225WMG0_9STRA3.470e-2770.59Midasin-like protein n=1 Tax=Phytophthora megakary... [more]
W2Q5P2_PHYPN3.470e-2770.59VWFA domain-containing protein n=9 Tax=Phytophthor... [more]
A0A3M6VQJ5_9STRA3.470e-2770.59VWFA domain-containing protein n=2 Tax=Peronospora... [more]
H3GJC4_PHYRM3.470e-2770.59VWFA domain-containing protein n=1 Tax=Phytophthor... [more]
G4ZMS6_PHYSP3.470e-2770.59VWFA domain-containing protein n=8 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6692contigP-wetherbeei_contig6692:2695..3065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FL28
PFAMsAAA_5
Model size204
Max annot lvl2759|Eukaryota
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.71e-28
EggNOG OGsCOG5271@1|root,KOG1808@2759|Eukaryota
DescriptionNuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
Cds size198
COG categoryM
BRITEko00000,ko00001,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.2907925-UTR-P-wetherbeei_contig6692:2694..27001683186930.2907925-UTR-P-wetherbeei_contig6692:2694..2700Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6692 2695..2700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.300379-CDS-P-wetherbeei_contig6692:2700..28171683186930.300379-CDS-P-wetherbeei_contig6692:2700..2817Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6692 2701..2817 +
1683186930.3119967-CDS-P-wetherbeei_contig6692:2984..30651683186930.3119967-CDS-P-wetherbeei_contig6692:2984..3065Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6692 2985..3065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6692.2.1prot_P-wetherbeei_contig6692.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6692 2701..3065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6692.2.1

>prot_P-wetherbeei_contig6692.2.1 ID=prot_P-wetherbeei_contig6692.2.1|Name=mRNA_P-wetherbeei_contig6692.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
MMRLFRLVGRCVSHSEPVLLVGDTGCGKTTVCQLFALLMGRPLHIINCHL
HTEASDLLGGLRPLRG
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mRNA from alignment at P-wetherbeei_contig6692:2695..3065+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6692.2.1 ID=mRNA_P-wetherbeei_contig6692.2.1|Name=mRNA_P-wetherbeei_contig6692.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=371bp|location=Sequence derived from alignment at P-wetherbeei_contig6692:2695..3065+ (Phaeothamnion wetherbeei SAG_119_79)
AGGTCCATGATGCGGCTCTTCCGCCTCGTTGGCCGATGCGTGAGTCACAG
CGAGCCGGTGCTTTTGGTGGGCGACACGGGCTGCGGCAAGACGACTGTCT
GCCAGCTCTTCGCTCTTCTCATGGTGAGTCTACGTCGCCGTTTAGCGGGC
GCGGCAGTAGAGCTTAGTGCTTGCGTTTGGCGTTACTTGTCGGCGCTCAT
CTTCCTGCTTCACCCTTCCTGGTCTGTCTCTGTTAAGCTGTGTCCAATTC
TCTATTTGCCTGAATAATTTCGTGCTTCTTTTCCCTCTAGGGACGGCCAC
TGCACATCATAAACTGCCATCTGCACACCGAGGCGTCCGACTTGCTGGGC
GGCCTGCGGCCACTGCGCGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6692:2695..3065+

>mRNA_P-wetherbeei_contig6692.2.1 ID=mRNA_P-wetherbeei_contig6692.2.1|Name=mRNA_P-wetherbeei_contig6692.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig6692:2695..3065+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCGGCTCTTCCGCCTCGTTGGCCGATGCGTGAGTCACAGCGAGCC
GGTGCTTTTGGTGGGCGACACGGGCTGCGGCAAGACGACTGTCTGCCAGC
TCTTCGCTCTTCTCATGGGACGGCCACTGCACATCATAAACTGCCATCTG
CACACCGAGGCGTCCGACTTGCTGGGCGGCCTGCGGCCACTGCGCGGT
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