mRNA_P-wetherbeei_contig669.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig669.1.1
Unique NamemRNA_P-wetherbeei_contig669.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig669.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig669contigP-wetherbeei_contig669:325..1557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size372
Hectar predicted targeting categoryother localisation
Exons3
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.9081588-CDS-P-wetherbeei_contig669:324..5291683186929.9081588-CDS-P-wetherbeei_contig669:324..529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig669 325..529 -
1683186929.9190338-CDS-P-wetherbeei_contig669:1090..11851683186929.9190338-CDS-P-wetherbeei_contig669:1090..1185Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig669 1091..1185 -
1683186929.9290056-CDS-P-wetherbeei_contig669:1485..15571683186929.9290056-CDS-P-wetherbeei_contig669:1485..1557Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig669 1486..1557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig669.1.1prot_P-wetherbeei_contig669.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig669 325..1557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig669.1.1

>prot_P-wetherbeei_contig669.1.1 ID=prot_P-wetherbeei_contig669.1.1|Name=mRNA_P-wetherbeei_contig669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
GSGSGNRSVVAATAAAAAAAAAAAGGGAELTAGQASGVGGAVNITAVAAA
AAAAAIDGAPSAGSSSADGEPLDGLDLMPRMTHLGGAGFAAGAYFGGGDA
SAKLNAAAAAAMSAVAAAAAVVDG
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mRNA from alignment at P-wetherbeei_contig669:325..1557-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig669.1.1 ID=mRNA_P-wetherbeei_contig669.1.1|Name=mRNA_P-wetherbeei_contig669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1233bp|location=Sequence derived from alignment at P-wetherbeei_contig669:325..1557- (Phaeothamnion wetherbeei SAG_119_79)
GGGAGTGGGAGCGGCAACCGAAGCGTGGTGGCGGCGACGGCCGCGGCTGC
GGCTGCCGCGGCGGCGGCGGCTGTGGTGGCGGACGTGCCTCAGTCGATCC
GGGCGCTGCAGGGTGTCGACCCTCCGCAGCGCTGCGTCGAGGTGCTCTAC
AACCGGCGGGCGCGTGATATCTTCACGTGGACGACGACGAGCAGCGCCGC
TTTCGGCCCCATGCTCTCGCACGAGCATGCCAACCGCCTCAACCGCCGCG
TGCGACTGGCGTGGCTGCAGCAGTGGGTGGGCAAGGCCGCGGCGCATAAC
GTGGCGCCACCGGACCTCGCTGCCATCGCCGCGCTGGCCGGCGGTGGCCT
CGGCGTCGCCGGCGCGGGCAAGGGTGGCGGAGCCGAGCTCACAGCGGGGC
AGGCATCAGGAGTTGGCGGCGCCGTCAACATCACCGCCGTCGCAGCAGCA
GCAGCCGCCGCTGCCATGTGGCCGCGATCCGGAGGAGCCGCGGCTGCCGG
CGGCGGCAACGATGCAGATTCGCAGGTCGCCATCGCCGGGTCCCAGGTGA
CATACGGCTGGCGGGAGCACGAGCGCACCGTCGGCCTCGATGGGCTGCCG
GAAGATGGGCTTTTGGCGGGCTTGGAAGGGGCCGCCTGGCCGCCGCTCGG
CTCGCTCTTCCAGCCGGCGCTGGGTGAGGCACTGGAGGAGCGCGCATACC
ACCGCCACTTGGCAGCGCGCAGTGCGGGAGGGGTCGTCGACGACGGCGGA
ACCTCGGACGGCAGTGGTAAGGCGGGGGACGGCGGCGGTAGCGGCGCCAG
CGGCGCCAGCGGCTGCAGCGCTGTCTGCGCTGCGGGCACCGAGTCCAAGG
AGTCAGGTGCCAAGGCAGATGGCAAAGAGGCGGCAGCGGCGGATAGCGGC
GTGGACTTGGAAGGGGCGGTCAGTGCCGGAGGCGATCCCTTTGACGACGA
CGTTGCCTCCTTCAACGTCGAGATCAAGGGCGGGGCGTTGGTAGACGCAG
AAAGCAGCAGCGGCGGAGATGGGAGCAGCGACGGCGCACCGTCTGCTGGC
AGTTCGAGCGCCGATGGCGAACCGCTGGACGGTTTGGACTTAATGCCACG
TATGACGCACTTGGGCGGCGCCGGTTTTGCTGCCGGTGCCTATTTTGGCG
GTGGCGATGCATCGGCAAAGCTGAACGCCGCGGCCGCCGCTGCCATGTCC
GCAGTGGCGGCGGCGGCGGCGGTAGTGGATGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig669:325..1557-

>mRNA_P-wetherbeei_contig669.1.1 ID=mRNA_P-wetherbeei_contig669.1.1|Name=mRNA_P-wetherbeei_contig669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig669:325..1557- (Phaeothamnion wetherbeei SAG_119_79)
GGGAGTGGGAGCGGCAACCGAAGCGTGGTGGCGGCGACGGCCGCGGCTGC
GGCTGCCGCGGCGGCGGCGGCTGGTGGCGGAGCCGAGCTCACAGCGGGGC
AGGCATCAGGAGTTGGCGGCGCCGTCAACATCACCGCCGTCGCAGCAGCA
GCAGCCGCCGCTGCCATCGACGGCGCACCGTCTGCTGGCAGTTCGAGCGC
CGATGGCGAACCGCTGGACGGTTTGGACTTAATGCCACGTATGACGCACT
TGGGCGGCGCCGGTTTTGCTGCCGGTGCCTATTTTGGCGGTGGCGATGCA
TCGGCAAAGCTGAACGCCGCGGCCGCCGCTGCCATGTCCGCAGTGGCGGC
GGCGGCGGCGGTAGTGGATGGC
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