mRNA_P-wetherbeei_contig6677.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6677.7.1
Unique NamemRNA_P-wetherbeei_contig6677.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6677.7.1 vs. uniprot
Match: S8EP84_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8EP84_9LAMI)

HSP 1 Score: 92.4 bits (228), Expect = 1.730e-22
Identity = 58/102 (56.86%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 LGDLRWRSGLFPSRQWTLAPTACLPSCTPR---YSEF-----GSRPP-SPSSALPPRVITRRSTSIDFAENQLLPALIGLSPLATGHPLLLQQKWVRSSSAC 279
            L DL  RSGLFPSR W LAP   +  CT     YS+F     G + P SP SALP  +   RST IDFAENQL P L+GLSPLAT HP +L   WVRSS AC
Sbjct:    2 LRDLSVRSGLFPSRLWILAPKKSV--CTNDLGLYSKFPWGCTGEQLPYSPLSALPRAIDIIRSTKIDFAENQLYPILVGLSPLATSHPRILPHTWVRSSKAC 101          
BLAST of mRNA_P-wetherbeei_contig6677.7.1 vs. uniprot
Match: K0YNP1_9ACTO (Uncharacterized protein n=1 Tax=Schaalia turicensis ACS-279-V-Col4 TaxID=883077 RepID=K0YNP1_9ACTO)

HSP 1 Score: 75.9 bits (185), Expect = 4.410e-16
Identity = 45/91 (49.45%), Postives = 50/91 (54.95%), Query Frame = -3
Query:   20 WRTEPTSVAKAGDDLWLGVKGQSRPVIAGSPRNLLR*SV-------E*LPSGVEHWMG*GGASQTPNTEEYSSAGRQWVLRSIAERERAQI 271
            WRTEPT V   GD+LW+GVKGQS  VIAGSPRN  R SV       E L      W+     SQTPN    S A R   +  + ERE AQI
Sbjct:    2 WRTEPTRVENLGDELWVGVKGQSNSVIAGSPRNAFRCSVVCCLVEVELLDGRWALWVT--DVSQTPNAIRLSMAVRLRGISFVVERETAQI 90          
BLAST of mRNA_P-wetherbeei_contig6677.7.1 vs. uniprot
Match: A0A158T0E6_HAEIF (Uncharacterized protein n=1 Tax=Haemophilus influenzae TaxID=727 RepID=A0A158T0E6_HAEIF)

HSP 1 Score: 73.6 bits (179), Expect = 2.990e-15
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 3
Query:  138 PEGNHSTLYLNRFRGEPAITGLDWPFTPSHRSSPAFATEVGSVLQCV 278
            P+G  S LYLNRFRGEPAI+  DWPFTPSH+SS  F+T VGSVLQ V
Sbjct:   30 PKGVTSRLYLNRFRGEPAISRFDWPFTPSHKSSANFSTLVGSVLQLV 76          
BLAST of mRNA_P-wetherbeei_contig6677.7.1 vs. uniprot
Match: A0A0V0GJC4_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GJC4_SOLCH)

HSP 1 Score: 72.8 bits (177), Expect = 1.830e-14
Identity = 37/54 (68.52%), Postives = 38/54 (70.37%), Query Frame = -3
Query:  110 WRTEPTSVAKAGDDLWLGVKGQSRPVIAGSPRNLLR*SVE*LPSGVEHWMG*GG 271
            WRTEPT VAK GDDLWLGVKGQ R  IAG PRNL + SV      VEH MG GG
Sbjct:    5 WRTEPTYVAKYGDDLWLGVKGQPRSDIAGFPRNLFQXSVXCRWPEVEHSMGXGG 58          
BLAST of mRNA_P-wetherbeei_contig6677.7.1 vs. uniprot
Match: A0A8J3XWD9_9ACTN (Uncharacterized protein n=1 Tax=Planotetraspora silvatica TaxID=234614 RepID=A0A8J3XWD9_9ACTN)

HSP 1 Score: 68.9 bits (167), Expect = 1.450e-13
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = -3
Query:   65 THWRTEPTSVAKAGDDLWLGVKGQSRPVIAGSPRNLLR*SVE*LPSGVEHWMG*GGASQTPNTEEYSSAGR 277
            T WRTEPT V   GDDL +GVKGQS  VIAGSPRN  R SV      VE WM   G  +  +  + ++AG+
Sbjct:    4 TAWRTEPTRVENLGDDLCVGVKGQSNSVIAGSPRNAFRCSVACFLPEVELWMA-NGPYKVTDVSQTANAGK 73          
BLAST of mRNA_P-wetherbeei_contig6677.7.1 vs. uniprot
Match: E2S3A3_9CORY (Uncharacterized protein n=1 Tax=Corynebacterium pseudogenitalium ATCC 33035 TaxID=525264 RepID=E2S3A3_9CORY)

HSP 1 Score: 66.2 bits (160), Expect = 1.720e-12
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:  120 PIQCSTPEGNHSTLYLNRFRGEPAITGLDWPFTPSHRSSPAFATEVGSVL 269
            P+    P  N +TL+LN FRGEPAIT  DWPFTP+H SSP F+T VGS L
Sbjct:   14 PVALPPPSYN-TTLHLNAFRGEPAITEFDWPFTPTHSSSPQFSTYVGSRL 62          
BLAST of mRNA_P-wetherbeei_contig6677.7.1 vs. uniprot
Match: A0A0B2R388_GLYSO (Putative mitochondrial protein n=1 Tax=Glycine soja TaxID=3848 RepID=A0A0B2R388_GLYSO)

HSP 1 Score: 70.5 bits (171), Expect = 3.580e-12
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 1
Query:  115 PSPSSALPPRVITRRSTSIDFAENQLLPALIGLSPLATGHPLLLQQKWVRSSSA 276
            PSP SALP  +   RST IDFAENQL P L+GLSPLAT HP +L   WVRSS +
Sbjct:  279 PSPLSALPRAIDIMRSTEIDFAENQLYPILVGLSPLATSHPRILPHTWVRSSKS 332          
BLAST of mRNA_P-wetherbeei_contig6677.7.1 vs. uniprot
Match: A0A2L2YX30_PARTP (Uncharacterized protein (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YX30_PARTP)

HSP 1 Score: 60.5 bits (145), Expect = 2.100e-10
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 3
Query:  138 PEGNHSTLYLNRFRGEPAITGLDWPFTPSHRSSPAFAT 251
            P  + +TL+LN FRGEPAIT  DWPFTP+H SSP F T
Sbjct:   19 PPSSTTTLHLNAFRGEPAITEFDWPFTPTHNSSPQFLT 56          
BLAST of mRNA_P-wetherbeei_contig6677.7.1 vs. uniprot
Match: A0A6A6K077_HEVBR (AB hydrolase-1 domain-containing protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6K077_HEVBR)

HSP 1 Score: 64.7 bits (156), Expect = 3.790e-10
Identity = 30/53 (56.60%), Postives = 34/53 (64.15%), Query Frame = 3
Query:   93 FGVWLAPP*PIQCSTPEGNHSTLYLNRFRGEPAITGLDWPFTPSHRSSPAFAT 251
            FG  ++ P P     P    +TLYLNRFRGEPAI+  DWPFTPSH SS   AT
Sbjct:  217 FGKRMSLPSPFSALPPATYSTTLYLNRFRGEPAISKFDWPFTPSHSSSNTIAT 269          
BLAST of mRNA_P-wetherbeei_contig6677.7.1 vs. uniprot
Match: A0A5N6L8P8_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6L8P8_9ROSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.490e-9
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = -2
Query:  120 RGERPIKAGNSWFSAKSIEVERRVITLGGRALDG 221
            RGERPIK GNSWFSAK+IEV  R+ T+GGRALDG
Sbjct:   91 RGERPIKPGNSWFSAKTIEVVPRMDTVGGRALDG 124          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6677.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
S8EP84_9LAMI1.730e-2256.86Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
K0YNP1_9ACTO4.410e-1649.45Uncharacterized protein n=1 Tax=Schaalia turicensi... [more]
A0A158T0E6_HAEIF2.990e-1572.34Uncharacterized protein n=1 Tax=Haemophilus influe... [more]
A0A0V0GJC4_SOLCH1.830e-1468.52Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A8J3XWD9_9ACTN1.450e-1350.70Uncharacterized protein n=1 Tax=Planotetraspora si... [more]
E2S3A3_9CORY1.720e-1262.00Uncharacterized protein n=1 Tax=Corynebacterium ps... [more]
A0A0B2R388_GLYSO3.580e-1264.81Putative mitochondrial protein n=1 Tax=Glycine soj... [more]
A0A2L2YX30_PARTP2.100e-1065.79Uncharacterized protein (Fragment) n=1 Tax=Paraste... [more]
A0A6A6K077_HEVBR3.790e-1056.60AB hydrolase-1 domain-containing protein n=1 Tax=H... [more]
A0A5N6L8P8_9ROSI1.490e-979.41Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6677contigP-wetherbeei_contig6677:1459..1752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3880.AES58606
Model size279
Max annot lvl35493|Streptophyta
Hectar predicted targeting categorymitochondrion
Exons2
Evalue4.65e-13
EggNOG OGs2CYJ8@1|root,2S4RZ@2759|Eukaryota,37W3F@33090|Viridiplantae,3GKHF@35493|Streptophyta
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.2844017-CDS-P-wetherbeei_contig6677:1458..15611683186929.2844017-CDS-P-wetherbeei_contig6677:1458..1561Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6677 1459..1561 +
1683186929.29318-CDS-P-wetherbeei_contig6677:1576..17521683186929.29318-CDS-P-wetherbeei_contig6677:1576..1752Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6677 1577..1752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6677.7.1prot_P-wetherbeei_contig6677.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6677 1459..1752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6677.7.1

>prot_P-wetherbeei_contig6677.7.1 ID=prot_P-wetherbeei_contig6677.7.1|Name=mRNA_P-wetherbeei_contig6677.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
LGDLRWRSGLFPSRQWTLAPTACLPSCTPRYSEFGSRPPSPSSALPPRVI
TRRSTSIDFAENQLLPALIGLSPLATGHPLLLQQKWVRSSSAC
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mRNA from alignment at P-wetherbeei_contig6677:1459..1752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6677.7.1 ID=mRNA_P-wetherbeei_contig6677.7.1|Name=mRNA_P-wetherbeei_contig6677.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig6677:1459..1752+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGGGGACCTTAGATGGCGATCTGGGCTCTTTCCCTCTCGGCAATGGAC CTTAGCACCCACTGCCTGCCTGCCGAGCTGTACTCCTCGGTATTCGGAGT TTGGTTAGGTTTGGTAAGGCTCGCGCCCCCCTAGCCCATCCAGTGCTCTA CCCCCGAGGGTAATCACTCGACGCTCTACCTCAATAGATTTCGCGGAGAA CCAGCTATTACCGGCCTTGATTGGCCTTTCACCCCTAGCCACAGGTCATC CCCTGCTTTTGCAACAGAAGTGGGTTCGGTCCTCCAGTGCGTGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6677:1459..1752+

>mRNA_P-wetherbeei_contig6677.7.1 ID=mRNA_P-wetherbeei_contig6677.7.1|Name=mRNA_P-wetherbeei_contig6677.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig6677:1459..1752+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGGGGACCTTAGATGGCGATCTGGGCTCTTTCCCTCTCGGCAATGGAC
CTTAGCACCCACTGCCTGCCTGCCGAGCTGTACTCCTCGGTATTCGGAGT
TTGGCTCGCGCCCCCCTAGCCCATCCAGTGCTCTACCCCCGAGGGTAATC
ACTCGACGCTCTACCTCAATAGATTTCGCGGAGAACCAGCTATTACCGGC
CTTGATTGGCCTTTCACCCCTAGCCACAGGTCATCCCCTGCTTTTGCAAC
AGAAGTGGGTTCGGTCCTCCAGTGCGTGT
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