mRNA_P-wetherbeei_contig6677.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6677.5.1
Unique NamemRNA_P-wetherbeei_contig6677.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6677.5.1 vs. uniprot
Match: E0XS38_9PROT (Uncharacterized protein (Fragment) n=1 Tax=uncultured alpha proteobacterium HF0070_14E07 TaxID=710804 RepID=E0XS38_9PROT)

HSP 1 Score: 177 bits (449), Expect = 6.710e-55
Identity = 87/132 (65.91%), Postives = 99/132 (75.00%), Query Frame = 1
Query:   16 TPSRPTNINVVPIDYAFRPRLRGRLTLRGLTLRRNPWTYGDRVSHPVCRYSCQHSHFRYLQQTLRSTFTGLRNAPLP--RACAHPHLRCLA*DPLHFRRRTA*PVSYYAFFKGWLLLSQPPGCLSRPTSFPT 405
            T +R  NIN++PIDY FRPRLRGRLTL GLTL RNPW YG+ VSH +CRYSCQHSHFRYLQ   + TFTGLRNAPLP  +  +   +  L+ D    +   + PVSYYAFFKGWLLLSQPPGCL  PTSFPT
Sbjct:    8 TTTRLRNINLIPIDYGFRPRLRGRLTLGGLTLPRNPWAYGESVSHTLCRYSCQHSHFRYLQHPSQDTFTGLRNAPLPCVKDTSSASVYGLSPDTSSAQAGLSRPVSYYAFFKGWLLLSQPPGCLGLPTSFPT 139          
BLAST of mRNA_P-wetherbeei_contig6677.5.1 vs. uniprot
Match: A0A0P6G9A6_9CRUS (Uncharacterized protein (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6G9A6_9CRUS)

HSP 1 Score: 129 bits (325), Expect = 3.970e-36
Identity = 66/103 (64.08%), Postives = 71/103 (68.93%), Query Frame = 1
Query:   10 PSTPSRPTNINVVPIDYAFRPRLRGRLTLRGLTLRRNPWTYGDRVSHPVCRYSCQHSHFRYLQQTLRSTFTGLRNAPLPRACA-HPHLRCLA*DPLHFRRRTA 315
            PS  SRPTNINVVPIDY  R RLRGRLTL  L L RNPW +GD  SH V RYSC HSHFRYL   L   F GLRNAPLP +   +P LRC+   PLH RRR +
Sbjct:   27 PSHTSRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWNFGDSASHTVNRYSCLHSHFRYLHDPLPDRFNGLRNAPLPLSQRLNPKLRCITLAPLHLRRRIS 129          
BLAST of mRNA_P-wetherbeei_contig6677.5.1 vs. uniprot
Match: A0A7R9S1H0_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9S1H0_9CRUS)

HSP 1 Score: 127 bits (319), Expect = 7.090e-36
Identity = 59/80 (73.75%), Postives = 65/80 (81.25%), Query Frame = 1
Query:   10 PSTPSRPTNINVVPIDYAFRPRLRGRLTLRGLTLRRNPWTYGDRVSHPVCRYSCQHSHFRYLQQTLRSTFTGLRNAPLPR 249
            PS  +RPTNINVVPIDY  R RLRGRLTLRGL LRRNPW++G+R SHP+ RYSC HSHFRYL   L   FTG+RNAPLPR
Sbjct:    1 PSHTTRPTNINVVPIDYPLRARLRGRLTLRGLALRRNPWSFGERASHPLYRYSCLHSHFRYLHDPLPDRFTGVRNAPLPR 80          
BLAST of mRNA_P-wetherbeei_contig6677.5.1 vs. uniprot
Match: Q3BKI0_9PROT (Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI0_9PROT)

HSP 1 Score: 121 bits (304), Expect = 1.000e-32
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    1 LTLPSTPSRPTNINVVPIDYAFRPRLRGRLTLRGLTLRRNPWTYGDRVSHPVCRYSCQHSHFRYLQQTLR 210
            LT   T SRPTNINVVPIDYAFRPRLRGRLTLRGL LRRNPWT+G+ VSH +CRYSCQHSHFRYLQ+  R
Sbjct:   81 LTKVVTSSRPTNINVVPIDYAFRPRLRGRLTLRGLALRRNPWTFGESVSHTLCRYSCQHSHFRYLQRPSR 150          
BLAST of mRNA_P-wetherbeei_contig6677.5.1 vs. uniprot
Match: A0A7S3ICQ2_9CILI (Hypothetical protein (Fragment) n=1 Tax=Anophryoides haemophila TaxID=46462 RepID=A0A7S3ICQ2_9CILI)

HSP 1 Score: 120 bits (301), Expect = 1.290e-32
Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query:   10 PSTPSRPTNINVVPIDYAFRPRLRGRLTLRGLTLRRNPWTYGDRVSHPVCRYSCQHSHFRYLQQTLRSTFTGLRNAPLPR 249
            PS  +RPTNINVVPIDY  R RLRGRLTL  L L RNPW++G+R SHP+ RYSC HSHFRYL   L   FTGLRNAPLPR
Sbjct:   42 PSHTTRPTNINVVPIDYPLRARLRGRLTLLRLALSRNPWSFGERASHPLYRYSCLHSHFRYLHDPLPDRFTGLRNAPLPR 121          
BLAST of mRNA_P-wetherbeei_contig6677.5.1 vs. uniprot
Match: A0A166H1M7_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium 5H7 TaxID=1701327 RepID=A0A166H1M7_9BACT)

HSP 1 Score: 111 bits (278), Expect = 1.810e-29
Identity = 55/92 (59.78%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   43 VVPIDYAFRPRLRGRLTLRGLTLRRNPWTYGDRVSHPVCRYSCQHSHFRYLQQTLRSTFTGLRNAPLPRACA-HPHLRCLA*DPLHFRRRTA 315
            +VPIDY  R RLRGRLTL  L L RNPW++GD  SH V RYSCQHSHFRYL   L   F  LRNAPLP +   +P LRC+   P+H RRR +
Sbjct:    1 MVPIDYPLRARLRGRLTLLRLALSRNPWSFGDSASHTVYRYSCQHSHFRYLHGPLPDRFISLRNAPLPLSQRLNPKLRCITLAPIHLRRRIS 92          
BLAST of mRNA_P-wetherbeei_contig6677.5.1 vs. uniprot
Match: H6SIE3_PARPM (Uncharacterized protein n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIE3_PARPM)

HSP 1 Score: 110 bits (276), Expect = 4.600e-29
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   37 INVVPIDYAFRPRLRGRLTLRGLTLRRNPWTYGDRVSHPVCRYSCQHSHFRYLQQTLRSTFTGLRNAPLP 246
            IN++ I Y FRPRLR RLTLRGLTLRRNPW +G  VSH   RYSCQHSH  YLQQ+ R+TFTG+RNAPLP
Sbjct:   23 INLIAIAYGFRPRLRDRLTLRGLTLRRNPWAFGGSVSHTSFRYSCQHSHXXYLQQSSRTTFTGVRNAPLP 92          
BLAST of mRNA_P-wetherbeei_contig6677.5.1 vs. uniprot
Match: H6SID8_PARPM (Uncharacterized protein (Fragment) n=2 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SID8_PARPM)

HSP 1 Score: 110 bits (276), Expect = 1.720e-28
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   37 INVVPIDYAFRPRLRGRLTLRGLTLRRNPWTYGDRVSHPVCRYSCQHSHFRYLQQTLRSTFTGLRNAPLP 246
            IN++ I Y FRPRLR RLTLRGLTLRRNPW +G  VSH   RYSCQHSH  YLQQ+ R+TFTG+RNAPLP
Sbjct:   58 INLIAIAYGFRPRLRDRLTLRGLTLRRNPWAFGGSVSHTSFRYSCQHSHXXYLQQSSRTTFTGVRNAPLP 127          
BLAST of mRNA_P-wetherbeei_contig6677.5.1 vs. uniprot
Match: A0A6A5KV19_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KV19_LUPAL)

HSP 1 Score: 116 bits (291), Expect = 1.730e-28
Identity = 65/117 (55.56%), Postives = 77/117 (65.81%), Query Frame = 1
Query:   28 PTNINVVPIDYAFRPRLRGRLTLRGLTLRRNPWTYGDRVSHPVCRYSCQHSHFRYLQQTLRS----TFTGLRNAPLPRACAHPHLRCLA*DPLHFRRRTA*PVSYYAFFKGWLLLSQ 366
            PTNINVVPIDYA  PRLRGRLTL  LTL RNPW++G+ VSHP+ RYSCQHSHFRYLQ+        T+  LR     R   +P LRC+A  PLHFRR+      Y   F+G   +S+
Sbjct:  247 PTNINVVPIDYACPPRLRGRLTLLRLTLSRNPWSFGEGVSHPLYRYSCQHSHFRYLQRPSTGPPSQTYGTLRYHSSKR---NPQLRCMALAPLHFRRKD----PYLDQFRGEPAISE 356          
BLAST of mRNA_P-wetherbeei_contig6677.5.1 vs. uniprot
Match: A0A2L2YH53_PARTP (Uncharacterized protein (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YH53_PARTP)

HSP 1 Score: 102 bits (253), Expect = 3.970e-26
Identity = 47/57 (82.46%), Postives = 48/57 (84.21%), Query Frame = 1
Query:   16 TPSRPTNINVVPIDYAFRPRLRGRLTLRGLTLRRNPWTYGDRVSHPVCRYSCQHSHF 186
            TP RPT IN VPID AFRPRLR RLTLR LTLRRNPWT+GD V H VCRYSCQHSHF
Sbjct:    2 TPRRPTKINAVPIDSAFRPRLRDRLTLRRLTLRRNPWTFGDTVFHSVCRYSCQHSHF 58          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6677.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E0XS38_9PROT6.710e-5565.91Uncharacterized protein (Fragment) n=1 Tax=uncultu... [more]
A0A0P6G9A6_9CRUS3.970e-3664.08Uncharacterized protein (Fragment) n=1 Tax=Daphnia... [more]
A0A7R9S1H0_9CRUS7.090e-3673.75Hypothetical protein (Fragment) n=1 Tax=Argulus fo... [more]
Q3BKI0_9PROT1.000e-3281.43Uncharacterized protein n=1 Tax=Magnetospirillum g... [more]
A0A7S3ICQ2_9CILI1.290e-3271.25Hypothetical protein (Fragment) n=1 Tax=Anophryoid... [more]
A0A166H1M7_9BACT1.810e-2959.78Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
H6SIE3_PARPM4.600e-2972.86Uncharacterized protein n=1 Tax=Pararhodospirillum... [more]
H6SID8_PARPM1.720e-2872.86Uncharacterized protein (Fragment) n=2 Tax=Pararho... [more]
A0A6A5KV19_LUPAL1.730e-2855.56Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A2L2YH53_PARTP3.970e-2682.46Uncharacterized protein (Fragment) n=1 Tax=Paraste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6677contigP-wetherbeei_contig6677:1045..1449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1150469.RSPPHO_03259
Model size405
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.25e-30
EggNOG OGs2DTV2@1|root,33MS7@2|Bacteria,1NKAB@1224|Proteobacteria
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.2427878-CDS-P-wetherbeei_contig6677:1044..13291683186929.2427878-CDS-P-wetherbeei_contig6677:1044..1329Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6677 1045..1329 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.251802-UTR-P-wetherbeei_contig6677:1329..14491683186929.251802-UTR-P-wetherbeei_contig6677:1329..1449Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6677 1330..1449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6677.5.1prot_P-wetherbeei_contig6677.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6677 1045..1329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6677.5.1

>prot_P-wetherbeei_contig6677.5.1 ID=prot_P-wetherbeei_contig6677.5.1|Name=mRNA_P-wetherbeei_contig6677.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
LTLPSTPSRPTNINVVPIDYAFRPRLRGRLTLRGLTLRRNPWTYGDRVSH
PVCRYSCQHSHFRYLQQTLRSTFTGLRNAPLPRACAHPHLRCLA*
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mRNA from alignment at P-wetherbeei_contig6677:1045..1449+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6677.5.1 ID=mRNA_P-wetherbeei_contig6677.5.1|Name=mRNA_P-wetherbeei_contig6677.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig6677:1045..1449+ (Phaeothamnion wetherbeei SAG_119_79)
CTTACGCTTCCGTCAACACCCAGCAGGCCCACGAATATTAACGTGGTTCC CATCGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTTACCCTGCGCG GATTAACCTTGCGCAGGAACCCTTGGACTTACGGCGACAGGGTTTCTCAC CCTGTTTGTCGTTACTCATGTCAGCATTCTCACTTCCGATACCTCCAGCA GACCTTACGGTCCACCTTCACAGGCTTACGGAACGCTCCGCTACCGCGTG CTTGCGCACACCCGCATCTTCGGTGCCTGGCTTGAGACCCGTTACATTTT CGGCGCAGGACAGCTTGACCAGTGAGCTATTACGCTTTCTTTAAAGGATG GCTGCTTCTAAGCCAACCTCCTGGTTGTTTAAGCCGTCCCACATCCTTTC CCACT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6677:1045..1449+

>mRNA_P-wetherbeei_contig6677.5.1 ID=mRNA_P-wetherbeei_contig6677.5.1|Name=mRNA_P-wetherbeei_contig6677.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig6677:1045..1449+ (Phaeothamnion wetherbeei SAG_119_79)
CTTACGCTTCCGTCAACACCCAGCAGGCCCACGAATATTAACGTGGTTCC
CATCGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTTACCCTGCGCG
GATTAACCTTGCGCAGGAACCCTTGGACTTACGGCGACAGGGTTTCTCAC
CCTGTTTGTCGTTACTCATGTCAGCATTCTCACTTCCGATACCTCCAGCA
GACCTTACGGTCCACCTTCACAGGCTTACGGAACGCTCCGCTACCGCGTG
CTTGCGCACACCCGCATCTTCGGTGCCTGGCTTGA
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