mRNA_P-wetherbeei_contig666.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig666.3.1
Unique NamemRNA_P-wetherbeei_contig666.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig666.3.1 vs. uniprot
Match: D7G6A8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A8_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 5.650e-51
Identity = 81/111 (72.97%), Postives = 95/111 (85.59%), Query Frame = 1 
Query:    1 NMDRDSLGAAGVIAITGPRSFGTARVLTELQEAWLLGYGDVCIVSPGSAMGVFGHSRTSRAPIVVVDGKTAHQSTSSQPCLADVGLVQHASCFTPGMLSRLSYDPAVPCVG 333
            ++ +DSLGAAGV+AITGPR FGT R+LTELQ+AWLLGYGDV IVSP S +GV GH+R S +PIV++D  TAHQSTSSQPCLAD+G VQ ASCF+  MLSRLSYDP VPC+G
Sbjct:  262 DLGQDSLGAAGVVAITGPRGFGTTRILTELQQAWLLGYGDVSIVSPASPIGVLGHARMSVSPIVILDSHTAHQSTSSQPCLADIGRVQEASCFSSAMLSRLSYDPNVPCLG 372
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BLAST of mRNA_P-wetherbeei_contig666.3.1 vs. uniprot
Match: A0A6H5JJN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJN7_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 8.720e-50
Identity = 82/111 (73.87%), Postives = 94/111 (84.68%), Query Frame = 1 
Query:    1 NMDRDSLGAAGVIAITGPRSFGTARVLTELQEAWLLGYGDVCIVSPGSAMGVFGHSRTSRAPIVVVDGKTAHQSTSSQPCLADVGLVQHASCFTPGMLSRLSYDPAVPCVG 333
            ++ +DSLGAAGV+AITGPR FGT R+LTELQ+AWLLGYGDV IVSP S +GV GH+R S +PIV+VD  TAHQSTSSQPCLADVG VQ A CF+  MLSRLSYDP VPC+G
Sbjct:  381 DLGQDSLGAAGVVAITGPRGFGTTRILTELQQAWLLGYGDVSIVSPASPIGVLGHARMSVSPIVIVDSHTAHQSTSSQPCLADVGRVQEARCFSSAMLSRLSYDPNVPCLG 491
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BLAST of mRNA_P-wetherbeei_contig666.3.1 vs. uniprot
Match: A0A835YLY2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY2_9STRA)

HSP 1 Score: 150 bits (378), Expect = 5.370e-41
Identity = 72/108 (66.67%), Postives = 84/108 (77.78%), Query Frame = 1 
Query:   10 RDSLGAAGVIAITGPRSFGTARVLTELQEAWLLGYGDVCIVSPGSAMGVFGHSRTSRAPIVVV-DGKTAHQSTSSQPCLADVGLVQHASCFTPGMLSRLSYDPAVPCV 330
            +D+LGAAG+IAITGPR  GT R+LTELQE WLLGY DVCIVSP S  GV GH+RT RAPIVV  DG  AH S ++QPC AD+  ++ ASCF P ML++LS DP VPCV
Sbjct:  270 QDALGAAGIIAITGPRGTGTRRILTELQEVWLLGYADVCIVSPASPTGVVGHARTGRAPIVVAADGGAAHASAATQPCFADLAALRAASCFRPDMLAQLSIDPEVPCV 377
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig666.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6A8_ECTSI5.650e-5172.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJN7_9PHAE8.720e-5073.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLY2_9STRA5.370e-4166.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig666contigP-wetherbeei_contig666:8533..8865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size333
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186928.3763976-CDS-P-wetherbeei_contig666:8532..88621683186928.3763976-CDS-P-wetherbeei_contig666:8532..8862Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig666 8533..8862 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186928.3894367-UTR-P-wetherbeei_contig666:8862..88651683186928.3894367-UTR-P-wetherbeei_contig666:8862..8865Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig666 8863..8865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig666.3.1prot_P-wetherbeei_contig666.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig666 8533..8862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig666.3.1

>prot_P-wetherbeei_contig666.3.1 ID=prot_P-wetherbeei_contig666.3.1|Name=mRNA_P-wetherbeei_contig666.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MDRDSLGAAGVIAITGPRSFGTARVLTELQEAWLLGYGDVCIVSPGSAMG
VFGHSRTSRAPIVVVDGKTAHQSTSSQPCLADVGLVQHASCFTPGMLSRL
SYDPAVPCVG
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mRNA from alignment at P-wetherbeei_contig666:8533..8865-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig666.3.1 ID=mRNA_P-wetherbeei_contig666.3.1|Name=mRNA_P-wetherbeei_contig666.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig666:8533..8865- (Phaeothamnion wetherbeei SAG_119_79)
AACATGGATCGGGACAGCCTGGGCGCGGCGGGCGTCATCGCCATCACGGG
GCCCCGCTCCTTTGGCACCGCCCGAGTCCTGACGGAGCTACAGGAGGCAT
GGCTCCTTGGCTACGGCGACGTCTGCATCGTCTCCCCGGGCTCCGCCATG
GGCGTCTTCGGACACTCCCGAACCAGCCGCGCGCCCATCGTGGTCGTGGA
CGGCAAGACAGCGCACCAGTCGACGTCGTCGCAGCCGTGCCTTGCGGACG
TCGGCTTGGTGCAGCACGCCAGCTGCTTCACGCCGGGCATGCTCTCGCGG
CTGAGCTACGACCCGGCCGTGCCGTGCGTCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig666:8533..8865-

>mRNA_P-wetherbeei_contig666.3.1 ID=mRNA_P-wetherbeei_contig666.3.1|Name=mRNA_P-wetherbeei_contig666.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig666:8533..8865- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCGGGACAGCCTGGGCGCGGCGGGCGTCATCGCCATCACGGGGCC
CCGCTCCTTTGGCACCGCCCGAGTCCTGACGGAGCTACAGGAGGCATGGC
TCCTTGGCTACGGCGACGTCTGCATCGTCTCCCCGGGCTCCGCCATGGGC
GTCTTCGGACACTCCCGAACCAGCCGCGCGCCCATCGTGGTCGTGGACGG
CAAGACAGCGCACCAGTCGACGTCGTCGCAGCCGTGCCTTGCGGACGTCG
GCTTGGTGCAGCACGCCAGCTGCTTCACGCCGGGCATGCTCTCGCGGCTG
AGCTACGACCCGGCCGTGCCGTGCGTCGGC
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