mRNA_P-wetherbeei_contig6653.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6653.1.1
Unique NamemRNA_P-wetherbeei_contig6653.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6653.1.1 vs. uniprot
Match: A0A7S0E8Y5_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E8Y5_9CRYP)

HSP 1 Score: 52.8 bits (125), Expect = 2.020e-5
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:  157 ESIIETPI--CIDGVGEGCDALAGGNPLIQRLQKSSAANKEKYEKEMLQQY 303
            + +IE P   C  GVG  C+ LA GNPLI  LQK SAAN+ KY+KE L+ Y
Sbjct:    8 DQLIEPPSQSCAQGVGGKCEELAEGNPLILELQKRSAANRLKYQKEELESY 58
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BLAST of mRNA_P-wetherbeei_contig6653.1.1 vs. uniprot
Match: L1ID49_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1ID49_GUITC)

HSP 1 Score: 53.1 bits (126), Expect = 5.790e-5
Identity = 34/69 (49.28%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:  106 GAFAAASVFAVPYVAVAES-IIETPI--CIDGVGEGCDALAGGNPLIQRLQKSSAANKEKYEKEMLQQY 303
            GAF A  V A     + E  +I+ P   C  GVG  C+ LA GNPLI  LQK SAAN+ KY+KE L+ Y
Sbjct:   63 GAFLAGPVLAEDRPKIPEDQMIKPPSNSCAQGVGGKCEELAEGNPLIMELQKRSAANRLKYQKEELESY 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6653.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S0E8Y5_9CRYP2.020e-554.90Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1ID49_GUITC5.790e-549.28Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6653contigP-wetherbeei_contig6653:2..869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog55529.EKX33819
Model size830
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.29e-06
EggNOG OGs2CACH@1|root,2SH2H@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_001300.1
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186927.9072297-UTR-P-wetherbeei_contig6653:1..1321683186927.9072297-UTR-P-wetherbeei_contig6653:1..132Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6653 2..132 -
1683186927.9187903-UTR-P-wetherbeei_contig6653:170..3831683186927.9187903-UTR-P-wetherbeei_contig6653:170..383Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6653 171..383 -
1683186927.9351304-UTR-P-wetherbeei_contig6653:815..8691683186927.9351304-UTR-P-wetherbeei_contig6653:815..869Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6653 816..869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186927.9270463-CDS-P-wetherbeei_contig6653:383..8151683186927.9270463-CDS-P-wetherbeei_contig6653:383..815Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6653 384..815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6653.1.1prot_P-wetherbeei_contig6653.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6653 384..815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6653.1.1

>prot_P-wetherbeei_contig6653.1.1 ID=prot_P-wetherbeei_contig6653.1.1|Name=mRNA_P-wetherbeei_contig6653.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MTAFSRERSQTLNRRGFGAFAAASVFAVPYVAVAESIIETPICIDGVGEG
CDALAGGNPLIQRLQKSSAANKEKYEKEMLQQYNEVRRAFAIFDSRSSDI
NYTRWLARVLKAVVASRTSRRMVVRAGPTADFAPYLRGSARRR*
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mRNA from alignment at P-wetherbeei_contig6653:2..869-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6653.1.1 ID=mRNA_P-wetherbeei_contig6653.1.1|Name=mRNA_P-wetherbeei_contig6653.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=868bp|location=Sequence derived from alignment at P-wetherbeei_contig6653:2..869- (Phaeothamnion wetherbeei SAG_119_79)
GTCGTAATCGTATCGTTGGTATCCTTTGCGAAGGCTTTCGCGCCGTCCCT
AACGATGACGGCATTTTCCCGGGAGCGAAGCCAGACATTGAACCGGAGGG
GCTTTGGCGCCTTCGCAGCTGCCTCTGTCTTCGCGGTCCCATATGTAGCA
GTCGCGGAGTCCATAATCGAAACGCCAATCTGTATCGATGGGGTTGGGGA
GGGCTGCGATGCCCTCGCTGGAGGAAACCCGCTCATTCAGAGGCTTCAAA
AGAGCTCCGCGGCGAACAAGGAAAAATATGAAAAGGAAATGTTGCAGCAG
TACAATGAGGTGAGACGCGCTTTTGCTATTTTTGATTCAAGATCTAGCGA
TATAAACTATACCCGGTGGCTGGCGCGGGTGTTGAAAGCGGTGGTCGCAT
CTCGGACTAGCCGCCGGATGGTGGTGCGCGCGGGGCCTACGGCTGATTTT
GCGCCGTATTTACGCGGATCGGCGCGGCGACGATGATGGTGACGGGGCCG
CTCGACATCGGAAGTGTGGTCGTCAGCGCATCGACGGTAGCGGCTGCAGC
TCGGCAGACCGGCGGGAGATGCCGATAGACTGTCCCTGGGCAGCTGCCGG
ACGGCGACAGAATGGCCGTCAACGGCGCAGTCGCAGCGGGGCGGCAGCAT
TGCTGGCGGGGGGCTGGCCGCGCCACCTGCGGCAGCGGCTGTGGCTCCGG
CGCCGACGGCCTGTTTGGTGGGGTTGAGCGCTGGAAGTTGGCGGGTTTTC
TTTTCTTTGTGGGGTCTTCGGAGCGGCGCCGGGGTTTTAGTGGAGGCTGC
GCTGTGCAGGGCGCCCTCTCCTCGGCATGCTGCCGGAATTGACTCTGGCG
GTGGCGGCCAGACTGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6653:2..869-

>mRNA_P-wetherbeei_contig6653.1.1 ID=mRNA_P-wetherbeei_contig6653.1.1|Name=mRNA_P-wetherbeei_contig6653.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig6653:2..869- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGCATTTTCCCGGGAGCGAAGCCAGACATTGAACCGGAGGGGCTT
TGGCGCCTTCGCAGCTGCCTCTGTCTTCGCGGTCCCATATGTAGCAGTCG
CGGAGTCCATAATCGAAACGCCAATCTGTATCGATGGGGTTGGGGAGGGC
TGCGATGCCCTCGCTGGAGGAAACCCGCTCATTCAGAGGCTTCAAAAGAG
CTCCGCGGCGAACAAGGAAAAATATGAAAAGGAAATGTTGCAGCAGTACA
ATGAGGTGAGACGCGCTTTTGCTATTTTTGATTCAAGATCTAGCGATATA
AACTATACCCGGTGGCTGGCGCGGGTGTTGAAAGCGGTGGTCGCATCTCG
GACTAGCCGCCGGATGGTGGTGCGCGCGGGGCCTACGGCTGATTTTGCGC
CGTATTTACGCGGATCGGCGCGGCGACGATGA
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