mRNA_P-wetherbeei_contig6644.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6644.1.1
Unique NamemRNA_P-wetherbeei_contig6644.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6644.1.1 vs. uniprot
Match: A0A482SLU4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLU4_9ARCH)

HSP 1 Score: 64.7 bits (156), Expect = 8.290e-11
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:    4 VNKLLLALKRDAPFQDYLKDPAVMRALRHWTGEERLPPEEAQSLTEDNYRVEAVFSRISALQAACHDAGISVPLNAVRTG 243
            +N +   L +D  FQD LK P V +AL+HWT + RL PEEA    E   RV  V  R   +QA C DA I +PL  V  G
Sbjct:   26 INAVFEKLSKDEDFQDDLKLPIVEKALKHWTNQHRLSPEEAMQFQEHR-RVIYVLQRFQMVQAVCRDALIPIPLELVSQG 104
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BLAST of mRNA_P-wetherbeei_contig6644.1.1 vs. uniprot
Match: A0A7S2G1M3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G1M3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.460e-9
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:    1 RVNKLLLALKRDAPFQDYLKDPAVMRALRHWTGEERLPPEEAQSL-TEDNY----RVEAVFSRISALQAACHDAGISVPLNAVRTG 243
            RVN  L  L  D  FQ  LK P V+ A+RHWTGE+RL   E+ SL  ED+Y     +    +++  +Q  C   GI++PLN++  G
Sbjct:   33 RVNSSLAQLADDRNFQQDLKVPEVVTAIRHWTGEKRLSEMESSSLFDEDSYAYQTHIRPCLTKLRGIQYECRGIGIALPLNSILNG 118
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BLAST of mRNA_P-wetherbeei_contig6644.1.1 vs. uniprot
Match: A0A7S2HPS9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2HPS9_9DINO)

HSP 1 Score: 54.3 bits (129), Expect = 3.580e-7
Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:    4 VNKLLLALKRDAPFQDYLKDPAVMRALRHWTGEERLPPEEAQSLTEDNYRVEAVFSRISALQAACHDAGISVPLNAV 234
            V+  L  LK +  F + +      RALRHW+GE RLPP E +   E N R+  +   +  LQ AC  AGI VPL++V
Sbjct:   14 VSLALGLLKTNDSFHEAVDCDEARRALRHWSGEARLPPSETEDW-EHNPRLMVILRHLRQLQHACKLAGIKVPLHSV 89
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BLAST of mRNA_P-wetherbeei_contig6644.1.1 vs. uniprot
Match: A0A7R9ZVB0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7R9ZVB0_9DINO)

HSP 1 Score: 50.4 bits (119), Expect = 8.280e-6
Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:    4 VNKLLLALKRDAPFQDYLKDPAVMRALRHWTGEERLPPEEAQSLTEDN---YR--VEAVFSRISALQAACHDAGIS-VPL 225
            V+ +L  L  D    + L   +V RALRHWT E RLPPEEA+ L +++   +R  +  V   +  LQ AC  AG+  +PL
Sbjct:   26 VDAMLEKLADDNELHESLGRSSVQRALRHWTNEARLPPEEAEELFDEDDAEFRLFIRPVLESLKPLQHACKVAGLGGIPL 105
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BLAST of mRNA_P-wetherbeei_contig6644.1.1 vs. uniprot
Match: A0A7S2HX62_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2HX62_9DINO)

HSP 1 Score: 49.3 bits (116), Expect = 3.150e-5
Identity = 29/75 (38.67%), Postives = 40/75 (53.33%), Query Frame = 1 
Query:    4 VNKLLLALKRDAPFQDYLKDPAVMRALRHWTGEERLPPEEAQSL-----TEDNYRVEAVFSRISALQAACHDAGI 213
            V+ +L  L  D    + L  P+V +AL+HWT E RL P+EA+ L     TE    +  V  R+  LQ AC  AG+
Sbjct:   19 VDAVLSQLADDDRLHESLGRPSVQKALKHWTNERRLSPDEAEELFDEDDTEFRLYIRPVLDRMRPLQHACKVAGL 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6644.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A482SLU4_9ARCH8.290e-1145.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2G1M3_9STRA1.460e-940.70Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2HPS9_9DINO3.580e-741.56Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7R9ZVB0_9DINO8.280e-640.00Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A7S2HX62_9DINO3.150e-538.67Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6644contigP-wetherbeei_contig6644:1936..2365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size243
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003360.1
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186927.3814728-CDS-P-wetherbeei_contig6644:1935..20871683186927.3814728-CDS-P-wetherbeei_contig6644:1935..2087Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6644 1936..2087 +
1683186927.3932028-CDS-P-wetherbeei_contig6644:2274..23651683186927.3932028-CDS-P-wetherbeei_contig6644:2274..2365Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6644 2275..2365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6644.1.1prot_P-wetherbeei_contig6644.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6644 1936..2365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6644.1.1

>prot_P-wetherbeei_contig6644.1.1 ID=prot_P-wetherbeei_contig6644.1.1|Name=mRNA_P-wetherbeei_contig6644.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
RVNKLLLALKRDAPFQDYLKDPAVMRALRHWTGEERLPPEEAQSLTEDNY
RVEAVFSRISALQAACHDAGISVPLNAVRTG
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mRNA from alignment at P-wetherbeei_contig6644:1936..2365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6644.1.1 ID=mRNA_P-wetherbeei_contig6644.1.1|Name=mRNA_P-wetherbeei_contig6644.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=430bp|location=Sequence derived from alignment at P-wetherbeei_contig6644:1936..2365+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGTCAACAAACTCCTCCTCGCGCTGAAGCGGGATGCGCCTTTCCAGGA
CTATTTGAAGGACCCAGCGGTGATGAGAGCCTTACGCCATTGGACGGGCG
AGGAGCGCCTGCCGCCCGAGGAGGCGCAATCGCTCACAGAGGACAACTAC
AGGTTGGTTCTGTCGGCGGAACCCGCCGTCGTTTGCGTTCGCGCGACGAG
TCGTTTTGGTTCATTCGCAGGCAGCACCCTCCCATTCGTAATTTGTCATC
TGAGTCGTCTTTCCCTGAGCGTGGTAAACAAGGCCCGCATTTCCTTTTTG
AAGACAAAACGCCCTCTCCCTGCATGACACGCACTGCAGAGTGGAGGCAG
TGTTTTCGCGAATCTCGGCTCTCCAGGCTGCTTGTCACGACGCCGGCATC
AGTGTCCCGCTCAACGCGGTCCGCACCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6644:1936..2365+

>mRNA_P-wetherbeei_contig6644.1.1 ID=mRNA_P-wetherbeei_contig6644.1.1|Name=mRNA_P-wetherbeei_contig6644.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig6644:1936..2365+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGTCAACAAACTCCTCCTCGCGCTGAAGCGGGATGCGCCTTTCCAGGA
CTATTTGAAGGACCCAGCGGTGATGAGAGCCTTACGCCATTGGACGGGCG
AGGAGCGCCTGCCGCCCGAGGAGGCGCAATCGCTCACAGAGGACAACTAC
AGAGTGGAGGCAGTGTTTTCGCGAATCTCGGCTCTCCAGGCTGCTTGTCA
CGACGCCGGCATCAGTGTCCCGCTCAACGCGGTCCGCACCGGC
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