mRNA_P-wetherbeei_contig664.4.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig664.4.2
Unique NamemRNA_P-wetherbeei_contig664.4.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig664.4.2 vs. uniprot
Match: UPI00103DCEEC (zinc finger CCCH domain-containing protein 32-like isoform X2 n=1 Tax=Glycine soja TaxID=3848 RepID=UPI00103DCEEC)

HSP 1 Score: 65.9 bits (159), Expect = 4.320e-9
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:  394 YPLRPGQPKCEFYMRNNSCKFGLQCRYDHPRD---IEPKLPPPGL-----ALHG 531
            YP RPG+P+C++Y+R   CKFGL CRY HPRD     P L P GL     ALHG
Sbjct:  293 YPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLSPVGLPLRPVALHG 346
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BLAST of mRNA_P-wetherbeei_contig664.4.2 vs. uniprot
Match: A0A388L5N0_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388L5N0_CHABU)

HSP 1 Score: 65.5 bits (158), Expect = 6.850e-9
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:  373 AEVLRANYPLRPGQPKCEFYMRNNSCKFGLQCRYDHPRD------IEPKLPPPGLAL 525
            A  + A+YP RPGQP+C+F++RN  CKFG  C++ HPR         P  PPPG+ L
Sbjct:  342 APAVAASYPERPGQPECQFFLRNGECKFGASCKFHHPRKGAVQPVALPIAPPPGVKL 398
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BLAST of mRNA_P-wetherbeei_contig664.4.2 vs. uniprot
Match: A0A072VP95_MEDTR (Zinc finger C-x8-C-x5-C-x3-H type protein n=9 Tax=IRL clade TaxID=2233839 RepID=A0A072VP95_MEDTR)

HSP 1 Score: 63.5 bits (153), Expect = 2.500e-8
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:  355 GGATHSAEVLRANYPLRPGQPKCEFYMRNNSCKFGLQCRYDHPRD---IEPKLPPPGLAL 525
            GG+T   +V    +P RPG+P C++YMR   CKFGL CRY HPRD     P L P GL L
Sbjct:  286 GGSTLQEKV----FPERPGEPVCQYYMRTGDCKFGLACRYHHPRDQVAARPLLSPFGLPL 341
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BLAST of mRNA_P-wetherbeei_contig664.4.2 vs. uniprot
Match: A0A0K9QFH9_SPIOL (Uncharacterized protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QFH9_SPIOL)

HSP 1 Score: 63.5 bits (153), Expect = 3.170e-8
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  349 KSGGATHSAEVLR-ANYPLRPGQPKCEFYMRNNSCKFGLQCRYDHPRD 489
            KSG ++H  + L+   YP RPGQP+CEF+M+  +CKF   CRY HPRD
Sbjct:  377 KSGASSHQQQQLQNEQYPERPGQPECEFFMKTGNCKFKSACRYHHPRD 424
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BLAST of mRNA_P-wetherbeei_contig664.4.2 vs. uniprot
Match: A0A2P2MB05_RHIMU (Uncharacterized protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MB05_RHIMU)

HSP 1 Score: 62.8 bits (151), Expect = 3.190e-8
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:  361 ATHSAEVLRANYPLRPGQPKCEFYMRNNSCKFGLQCRYDHPRDIEPKLPPPGLALHG 531
            A    ++L   +P RPGQP+C FYM+   CKF   C+Y HPR+  PK PP  L+  G
Sbjct:  159 AHQQPQMLIDEFPERPGQPECSFYMKTGDCKFKSNCKYHHPRNWLPKSPPRSLSDKG 215
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BLAST of mRNA_P-wetherbeei_contig664.4.2 vs. uniprot
Match: A0A445IGY6_GLYSO (Zinc finger CCCH domain-containing protein 32 isoform B n=7 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A445IGY6_GLYSO)

HSP 1 Score: 63.2 bits (152), Expect = 3.380e-8
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:  394 YPLRPGQPKCEFYMRNNSCKFGLQCRYDHPRD---IEPKLPPPGLAL 525
            +P RPG+P+C++Y+R   CKFGL CRY HPRD     P L P GL L
Sbjct:  293 FPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLSPVGLPL 339
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BLAST of mRNA_P-wetherbeei_contig664.4.2 vs. uniprot
Match: A0A2P2MAV2_RHIMU (Uncharacterized protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MAV2_RHIMU)

HSP 1 Score: 62.8 bits (151), Expect = 3.840e-8
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:  361 ATHSAEVLRANYPLRPGQPKCEFYMRNNSCKFGLQCRYDHPRDIEPKLPPPGLALHG 531
            A    ++L   +P RPGQP+C FYM+   CKF   C+Y HPR+  PK PP  L+  G
Sbjct:  188 AHQQPQMLIDEFPERPGQPECSFYMKTGDCKFKSNCKYHHPRNWLPKSPPRSLSDKG 244
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BLAST of mRNA_P-wetherbeei_contig664.4.2 vs. uniprot
Match: A0A7S3U647_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U647_9SPIT)

HSP 1 Score: 59.3 bits (142), Expect = 4.370e-8
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:  376 EVLRANYPLRPGQPKCEFYMRNNSCKFGLQCRYDHPRDIEP 498
            E+     PLRP Q  C FY++  +CKFG QCRYDHP  IEP
Sbjct:    8 ELNEIGLPLRPEQEPCSFYLKTGTCKFGPQCRYDHPNGIEP 48
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BLAST of mRNA_P-wetherbeei_contig664.4.2 vs. uniprot
Match: A0A1S3UY86_VIGRR (zinc finger CCCH domain-containing protein 32 isoform X4 n=8 Tax=Phaseoleae TaxID=163735 RepID=A0A1S3UY86_VIGRR)

HSP 1 Score: 62.8 bits (151), Expect = 4.790e-8
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:  394 YPLRPGQPKCEFYMRNNSCKFGLQCRYDHPRD---IEPKLPPPGLAL 525
            +P RPG+P+C++Y+R   CKFGL CRY HPRD     P L P GL L
Sbjct:  293 FPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLNPVGLPL 339
[Close]
BLAST of mRNA_P-wetherbeei_contig664.4.2 vs. uniprot
Match: A0A8B8M6V8_ABRPR (zinc finger CCCH domain-containing protein 32 isoform X4 n=6 Tax=indigoferoid/millettioid clade TaxID=2233855 RepID=A0A8B8M6V8_ABRPR)

HSP 1 Score: 62.8 bits (151), Expect = 4.790e-8
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:  394 YPLRPGQPKCEFYMRNNSCKFGLQCRYDHPRD---IEPKLPPPGLAL 525
            +P RPG+P+C++Y+R   CKFGL CRY HPRD     P L P GL L
Sbjct:  293 FPERPGEPECQYYLRTGDCKFGLACRYHHPRDQIVARPLLSPIGLPL 339
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig664.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00103DCEEC4.320e-955.56zinc finger CCCH domain-containing protein 32-like... [more]
A0A388L5N0_CHABU6.850e-947.37Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]
A0A072VP95_MEDTR2.500e-851.67Zinc finger C-x8-C-x5-C-x3-H type protein n=9 Tax=... [more]
A0A0K9QFH9_SPIOL3.170e-854.17Uncharacterized protein n=1 Tax=Spinacia oleracea ... [more]
A0A2P2MB05_RHIMU3.190e-845.61Uncharacterized protein n=1 Tax=Rhizophora mucrona... [more]
A0A445IGY6_GLYSO3.380e-855.32Zinc finger CCCH domain-containing protein 32 isof... [more]
A0A2P2MAV2_RHIMU3.840e-845.61Uncharacterized protein n=1 Tax=Rhizophora mucrona... [more]
A0A7S3U647_9SPIT4.370e-856.10Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A1S3UY86_VIGRR4.790e-855.32zinc finger CCCH domain-containing protein 32 isof... [more]
A0A8B8M6V8_ABRPR4.790e-855.32zinc finger CCCH domain-containing protein 32 isof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig664contigP-wetherbeei_contig664:7862..8940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4533.OB01G20080.1
PFAMszf-CCCH
Model size642
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0097159,GO:1901363
Exons2
Evalue4.29e-10
EggNOG OGsCOG5063@1|root,KOG1677@2759|Eukaryota,37RPU@33090|Viridiplantae,3G783@35493|Streptophyta,3KX7N@4447|Liliopsida,3I8SX@38820|Poales
Descriptionzinc finger CCCH domain-containing protein
Cds size642
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186926.9224784-CDS-P-wetherbeei_contig664:7861..83621683186926.9224784-CDS-P-wetherbeei_contig664:7861..8362Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig664 7862..8362 +
1683186926.933196-CDS-P-wetherbeei_contig664:8799..89401683186926.933196-CDS-P-wetherbeei_contig664:8799..8940Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig664 8800..8940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig664.4.2prot_P-wetherbeei_contig664.4.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig664 7862..8940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig664.4.2

>prot_P-wetherbeei_contig664.4.2 ID=prot_P-wetherbeei_contig664.4.2|Name=mRNA_P-wetherbeei_contig664.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=214bp
LSTLSPNNCFPTMNSVVTIVVSPPCDSPAGAAAPEAFVVPVAQTGDPAPS
QGAGGMEDRSSIDANASTSPHAPAETTATMGAKRSMPDEEASSPSEKKQR
TDRGGGGGAGTAAVGGKSGGATHSAEVLRANYPLRPGQPKCEFYMRNNSC
KFGLQCRYDHPRDIEPKLPPPGLALHGYPLRPGEQECPYYMRNGHCSYSP
NCHYHHPLEAPAYW
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mRNA from alignment at P-wetherbeei_contig664:7862..8940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig664.4.2 ID=mRNA_P-wetherbeei_contig664.4.2|Name=mRNA_P-wetherbeei_contig664.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1079bp|location=Sequence derived from alignment at P-wetherbeei_contig664:7862..8940+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTCAACACTCTCTCCCAACAACTGCTTCCCAACGATGAACAGCGTGGT
AACAATCGTTGTCAGTCCGCCGTGTGATTCACCCGCCGGCGCTGCGGCGC
CTGAGGCCTTCGTGGTGCCGGTCGCACAAACAGGGGATCCGGCACCGAGC
CAAGGGGCAGGAGGGATGGAAGACCGCTCAAGCATCGACGCGAACGCATC
TACGTCGCCTCATGCGCCCGCTGAGACGACAGCGACAATGGGTGCGAAGC
GTTCGATGCCGGACGAGGAAGCATCTTCTCCCTCCGAGAAGAAGCAGCGG
ACGGACCGTGGTGGCGGCGGCGGCGCCGGCACTGCGGCCGTTGGAGGAAA
GAGTGGTGGCGCCACGCACTCGGCGGAAGTTTTACGCGCCAATTACCCAT
TGCGTCCGGGCCAACCGAAATGCGAGTTCTACATGCGCAACAACAGCTGC
AAGTTCGGACTGCAGTGCCGCTACGACCACCCTCGAGACATTGAGCCCAA
GGTACACCTTTTGATTCATTTCGTGATGACGGAGAGAGTCCCTGCTGATG
CAATCGCACAGACGCACTTTTCAGTATGGCGGCAGCCAATCCGTTGTTGC
TCTTAATCCAGGGTGAATCGCTTCATTATGGCACCCAAAACTTACATTTT
TACGATTTTACACAGGCCTACGAGGACAACCGCCCCAAGCCACAGCCGCG
ACAGCAGGCAGGCCCCGGCACGGCACCACTGGGCCTTCCCAACGCCGCCG
CCGCCGTCGCCGCCGGCAGCGGCGGAGCCCGCGCCGCTGGGCCCGGCCCG
GGCTTCCGCCCTGGCCCGGGCTTCAGCCCCGGCCCGGGCTTCGGCCCCAT
CCCAGGCCAAGACGCGTTTGTCGGCGGCATCCCCAAAGGCGGAGTGCCGC
CGCGGCCGGGGCAGCAGCTGCAGCCGCAGCCGCTGCAGCTGCCGCCTCCG
GGGCTGGCGCTCCACGGCTACCCGCTGCGGCCGGGGGAGCAGGAGTGCCC
CTACTACATGAGAAACGGCCACTGCTCATACAGCCCCAACTGCCACTACC
ACCACCCGCTCGAAGCTCCGGCCTACTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig664:7862..8940+

>mRNA_P-wetherbeei_contig664.4.2 ID=mRNA_P-wetherbeei_contig664.4.2|Name=mRNA_P-wetherbeei_contig664.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=642bp|location=Sequence derived from alignment at P-wetherbeei_contig664:7862..8940+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTCAACACTCTCTCCCAACAACTGCTTCCCAACGATGAACAGCGTGGT
AACAATCGTTGTCAGTCCGCCGTGTGATTCACCCGCCGGCGCTGCGGCGC
CTGAGGCCTTCGTGGTGCCGGTCGCACAAACAGGGGATCCGGCACCGAGC
CAAGGGGCAGGAGGGATGGAAGACCGCTCAAGCATCGACGCGAACGCATC
TACGTCGCCTCATGCGCCCGCTGAGACGACAGCGACAATGGGTGCGAAGC
GTTCGATGCCGGACGAGGAAGCATCTTCTCCCTCCGAGAAGAAGCAGCGG
ACGGACCGTGGTGGCGGCGGCGGCGCCGGCACTGCGGCCGTTGGAGGAAA
GAGTGGTGGCGCCACGCACTCGGCGGAAGTTTTACGCGCCAATTACCCAT
TGCGTCCGGGCCAACCGAAATGCGAGTTCTACATGCGCAACAACAGCTGC
AAGTTCGGACTGCAGTGCCGCTACGACCACCCTCGAGACATTGAGCCCAA
GCTGCCGCCTCCGGGGCTGGCGCTCCACGGCTACCCGCTGCGGCCGGGGG
AGCAGGAGTGCCCCTACTACATGAGAAACGGCCACTGCTCATACAGCCCC
AACTGCCACTACCACCACCCGCTCGAAGCTCCGGCCTACTGG
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