mRNA_P-wetherbeei_contig6632.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6632.1.1
Unique NamemRNA_P-wetherbeei_contig6632.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6632.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6632contigP-wetherbeei_contig6632:64..1062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size999
Hectar predicted targeting categoryother localisation
Exons1
Cds size501
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186926.7322142-UTR-P-wetherbeei_contig6632:63..1431683186926.7322142-UTR-P-wetherbeei_contig6632:63..143Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6632 64..143 +
1683186926.7580216-UTR-P-wetherbeei_contig6632:644..10621683186926.7580216-UTR-P-wetherbeei_contig6632:644..1062Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6632 645..1062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186926.747154-CDS-P-wetherbeei_contig6632:143..6441683186926.747154-CDS-P-wetherbeei_contig6632:143..644Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6632 144..644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6632.1.1prot_P-wetherbeei_contig6632.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6632 144..644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6632.1.1

>prot_P-wetherbeei_contig6632.1.1 ID=prot_P-wetherbeei_contig6632.1.1|Name=mRNA_P-wetherbeei_contig6632.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
MPGSPPAEVKWPTNWQPALFYRDSLHDNAVCSSLLPYRHAPTGNGGDDFI
SDGPSDDILLGKVEDDILQFVRISFISLHRVPATLLSCCSFFLGHTRSFA
IAVYILPAIRCRHPRLPSLDDAAVDICHRTSPPSVAVLGRRCRHCCRHHH
CRRRISPRLVLPPLFG*
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mRNA from alignment at P-wetherbeei_contig6632:64..1062+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6632.1.1 ID=mRNA_P-wetherbeei_contig6632.1.1|Name=mRNA_P-wetherbeei_contig6632.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=999bp|location=Sequence derived from alignment at P-wetherbeei_contig6632:64..1062+ (Phaeothamnion wetherbeei SAG_119_79)
CAATCGCGTTGCCAAGCAAAACGGTGAGCATAACGAGGAGATCTGGGGAT
TTATGGGAACGCGACGGAAAGTAGAAAGAGATGCCAGGCAGCCCGCCGGC
AGAAGTCAAGTGGCCGACAAACTGGCAGCCAGCGCTCTTCTATCGAGATA
GCTTGCATGACAATGCCGTGTGCTCATCTCTTCTTCCCTACCGTCACGCC
CCGACGGGCAACGGAGGCGACGATTTCATCAGCGACGGTCCTTCGGACGA
TATCCTTCTCGGCAAAGTGGAGGACGACATTCTACAGTTTGTGAGAATAT
CTTTCATCTCGCTCCACCGCGTGCCTGCCACTTTGCTCTCCTGTTGCAGT
TTCTTTCTGGGCCACACCCGCAGCTTCGCCATCGCCGTCTACATTTTGCC
GGCGATACGTTGCCGCCACCCTCGGCTCCCGTCTTTGGACGATGCTGCCG
TGGATATTTGCCATCGCACGTCTCCGCCTTCGGTTGCTGTCTTAGGCCGC
CGCTGTCGCCACTGTTGCCGTCACCACCACTGCCGCCGCCGTATCTCGCC
ACGGCTGGTCCTGCCGCCGTTGTTTGGTTGATTGGTAGAGGCCTCTTCCC
GCCTCGCGTGCCGCCGATTATCCGCGCTGCCCGCTGTTCTACCTCGCAGA
GGTCGCTCTGGAGACGACACGCTGCTTGGCGGCGTGGGGTTTGACAAACT
GCAGGGTTTCTGTGGGTACTATTAGCCTGCTCGCAAGGCTACCTGTGGTC
TGCATCTCTTTTATGTGCTCAGGAAGGAAGCAGGGCCGAAGAGGGATGGA
GGCAGCTTTGGCTTGCCTATCTTTTCCACCCCCGCCCGCTCCTGCACCTT
GTCGACTCACCGGCGTGCAGGGCTTGCTTGTATAATGCTCGCGTGGTCCC
GCTACGCTATCACCCAATCGTCTGGAGCCGTCGCCCTGGCATGGCTCAGG
CTTCTACCGGCAGCATCCAAAGAGCCTGCCTCGGCGACGCTTCCCTCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6632:64..1062+

>mRNA_P-wetherbeei_contig6632.1.1 ID=mRNA_P-wetherbeei_contig6632.1.1|Name=mRNA_P-wetherbeei_contig6632.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig6632:64..1062+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAGGCAGCCCGCCGGCAGAAGTCAAGTGGCCGACAAACTGGCAGCC
AGCGCTCTTCTATCGAGATAGCTTGCATGACAATGCCGTGTGCTCATCTC
TTCTTCCCTACCGTCACGCCCCGACGGGCAACGGAGGCGACGATTTCATC
AGCGACGGTCCTTCGGACGATATCCTTCTCGGCAAAGTGGAGGACGACAT
TCTACAGTTTGTGAGAATATCTTTCATCTCGCTCCACCGCGTGCCTGCCA
CTTTGCTCTCCTGTTGCAGTTTCTTTCTGGGCCACACCCGCAGCTTCGCC
ATCGCCGTCTACATTTTGCCGGCGATACGTTGCCGCCACCCTCGGCTCCC
GTCTTTGGACGATGCTGCCGTGGATATTTGCCATCGCACGTCTCCGCCTT
CGGTTGCTGTCTTAGGCCGCCGCTGTCGCCACTGTTGCCGTCACCACCAC
TGCCGCCGCCGTATCTCGCCACGGCTGGTCCTGCCGCCGTTGTTTGGTTG
A
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