mRNA_P-wetherbeei_contig6619.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6619.1.1
Unique NamemRNA_P-wetherbeei_contig6619.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6619.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6619contigP-wetherbeei_contig6619:477..1509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LIK9
Model size799
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.61e-05
EggNOG OGsKOG3544@1|root,KOG3544@2759|Eukaryota
Descriptionstructural constituent of cuticle
Cds size798
COG categoryD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186925.8938658-CDS-P-wetherbeei_contig6619:477..9001683186925.8938658-CDS-P-wetherbeei_contig6619:477..900Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6619 478..900 -
1683186925.9047112-CDS-P-wetherbeei_contig6619:1134..15091683186925.9047112-CDS-P-wetherbeei_contig6619:1134..1509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6619 1135..1509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6619.1.1prot_P-wetherbeei_contig6619.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6619 478..1509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6619.1.1

>prot_P-wetherbeei_contig6619.1.1 ID=prot_P-wetherbeei_contig6619.1.1|Name=mRNA_P-wetherbeei_contig6619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=266bp
GRSRSGRHNVAIAHALSGGSRAGIRGSAMIPAGEDPFRVAAVATAAATAG
SRRDRFNSSGSGAKVVVFGVRDGLIGRSGSVLAWGERGHWETRPGTCTDA
ADHIAFRAGLEPLFADFNYHGVVYMVLFLGFMMASAVVVATLSPGSMSLA
GLLAVAALNLLVLLWLRPFSNAAVNALWTLAAACNAAVAALLLAAARQPS
SVDGFSYAATAVGLFGVVAVVMPCYLDFVAYVVGCCRHRRRGGSSPDNDD
VAAVIAAAGARPDGSG
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mRNA from alignment at P-wetherbeei_contig6619:477..1509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6619.1.1 ID=mRNA_P-wetherbeei_contig6619.1.1|Name=mRNA_P-wetherbeei_contig6619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1033bp|location=Sequence derived from alignment at P-wetherbeei_contig6619:477..1509- (Phaeothamnion wetherbeei SAG_119_79)
GGTCGGAGTCGCAGCGGCCGCCACAATGTCGCCATCGCGCACGCCCTCTC
CGGCGGTAGCCGCGCCGGCATCCGCGGCAGTGCCATGATCCCGGCCGGCG
AGGATCCGTTCCGGGTCGCTGCTGTCGCCACAGCCGCCGCCACCGCCGGG
TCCCGCCGTGACCGGTTCAACAGCAGCGGCAGTGGCGCCAAGGTAGTGGT
CTTTGGCGTCCGGGACGGGCTTATCGGCCGCAGCGGCTCCGTGCTGGCGT
GGGGGGAGCGCGGACACTGGGAGACGAGGCCAGGGACCTGCACGGACGCC
GCCGACCACATCGCGTTCCGCGCGGGGCTTGAACCGCTCTTCGCTGACTT
CAACTACCACGGCGTTGTCTATATGGCGAGTTTTGCGTCCTACCTTCTAT
TCTGTCTTTTGCTTTCAGGATGAGTTGTCTTCCCTCCCTGAATTCTTTGC
GGCGCTTCTGTGTTCGTTCGTACCTTTTCCGTTTCTGAACGCTCTCGATG
CGGCACTCTCTATGCTTCTCATCTCTTTCCACCACACTCCGCCCTAACAC
ATCACCTAACTTTCCTGTCAAACCCGCCGGAAACTCCCTCACACGAATTG
ATTAAACAGGTGCTGTTCCTGGGCTTCATGATGGCAAGTGCCGTCGTCGT
CGCGACGCTCTCTCCCGGTAGCATGTCGCTCGCTGGACTCCTAGCAGTCG
CCGCCCTCAATCTCCTCGTGCTGCTCTGGCTACGCCCCTTCAGCAACGCC
GCCGTCAACGCGCTCTGGACCCTCGCGGCCGCCTGCAACGCCGCAGTCGC
AGCTCTCCTGCTGGCGGCGGCGCGACAGCCTTCCAGTGTCGACGGCTTCT
CGTACGCCGCCACAGCGGTCGGCCTGTTTGGCGTGGTCGCCGTGGTGATG
CCCTGCTACCTCGATTTCGTCGCCTACGTTGTCGGCTGCTGCCGCCACCG
CCGCCGCGGCGGCAGCAGCCCCGACAATGACGATGTCGCCGCCGTCATAG
CCGCCGCCGGCGCCCGCCCTGACGGCAGCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6619:477..1509-

>mRNA_P-wetherbeei_contig6619.1.1 ID=mRNA_P-wetherbeei_contig6619.1.1|Name=mRNA_P-wetherbeei_contig6619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=798bp|location=Sequence derived from alignment at P-wetherbeei_contig6619:477..1509- (Phaeothamnion wetherbeei SAG_119_79)
GGTCGGAGTCGCAGCGGCCGCCACAATGTCGCCATCGCGCACGCCCTCTC
CGGCGGTAGCCGCGCCGGCATCCGCGGCAGTGCCATGATCCCGGCCGGCG
AGGATCCGTTCCGGGTCGCTGCTGTCGCCACAGCCGCCGCCACCGCCGGG
TCCCGCCGTGACCGGTTCAACAGCAGCGGCAGTGGCGCCAAGGTAGTGGT
CTTTGGCGTCCGGGACGGGCTTATCGGCCGCAGCGGCTCCGTGCTGGCGT
GGGGGGAGCGCGGACACTGGGAGACGAGGCCAGGGACCTGCACGGACGCC
GCCGACCACATCGCGTTCCGCGCGGGGCTTGAACCGCTCTTCGCTGACTT
CAACTACCACGGCGTTGTCTATATGGTGCTGTTCCTGGGCTTCATGATGG
CAAGTGCCGTCGTCGTCGCGACGCTCTCTCCCGGTAGCATGTCGCTCGCT
GGACTCCTAGCAGTCGCCGCCCTCAATCTCCTCGTGCTGCTCTGGCTACG
CCCCTTCAGCAACGCCGCCGTCAACGCGCTCTGGACCCTCGCGGCCGCCT
GCAACGCCGCAGTCGCAGCTCTCCTGCTGGCGGCGGCGCGACAGCCTTCC
AGTGTCGACGGCTTCTCGTACGCCGCCACAGCGGTCGGCCTGTTTGGCGT
GGTCGCCGTGGTGATGCCCTGCTACCTCGATTTCGTCGCCTACGTTGTCG
GCTGCTGCCGCCACCGCCGCCGCGGCGGCAGCAGCCCCGACAATGACGAT
GTCGCCGCCGTCATAGCCGCCGCCGGCGCCCGCCCTGACGGCAGCGGC
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