mRNA_P-wetherbeei_contig6615.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6615.1.1 vs. uniprot
Match: D7FZ90_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ90_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 5.900e-15 Identity = 201/687 (29.26%), Postives = 288/687 (41.92%), Query Frame = 1
Query: 763 LGVDAALAGQALRVRDFCYAFREPLQLAPFGIDDLNGALRWEAGPTVLLAEVHCALLTLLLRE---PTRGRALWADAVAADAGSLGKDMIAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPTKGRXXXXXXXXXXAGSDGIE-EELGIVPTLPIDFAPSD-------LLVPTTWQAMAYFLLPVLPAYR-----------------ARAAAAAAADKSG-------APAVAGQGPAALQELQGLRGGLGRREHELLPVGHKLLLLELLVDAAFDTRRVKNLLEANTSARTALEAERKEELLRCAKQAKEELADRKERAMELVR----EQILDGGFDSPGSTRAPKGKRGATVTAAAAENGGKNPRRAKXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------AQIAAAMADLYEQDAVGGPFYPMDPTAADAATNESDEXXXXXXXXXXXXXXXXXEGALAAMSRQELQQRXXXXDSLXXXXXXXXXXXXXXXXXXXDRAXXXXXLRMALATGNLAAXXXXXXXXXXXXXXGEDDDGNRWVLPELRDALVAVRKLQDVGRQAEVAGRFGRRLAEKFVRTEPVGVDRYGRRYWCFGGDDDRVYVEEMSRRTDAP 2499
L + +AG LR DF + + + L PFG+DD +L + AG +V++AEVH LL+L+ R P G+ GK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +G+E E+ I+ LP ++ L+ TWQ + LP + Y A A A K G A V A + L R L RE+ +P+ K LLLE+LVD A++T+R+++LL N +AR +LE++R+EE++ ++ +E+ +K + +R E L +DS A + KR + AA GK+ + XXXXXXXXXXXXXXXXXXXXXX Q+ + + + ++A GG + + D ++ D E ++R EL QR D+ + L+ A A G++ + X DDDG R++ PE+RDA VA+ ++ + E+ ++ +AEKFVRTEP+G DR GRRYW F GD R++VE ++RR P
Sbjct: 592 LSIATNVAGPILRAWDFLHLNSQTIMLTPFGLDDFADSLHYGAGASVMVAEVHTRLLSLIFRSKLGPPSGK--------------GKGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVV----------------------------EEGVEGEDAWIMALLPPRTNKNEQHDNAYNLVTALTWQTVFALALPHMAPYARAVAPPTPILGSTALCLAAAPAGTTESKRGSRVALRAAERVEADRVARGKALMRARRSLLEREYCSIPLQEKALLLEVLVDTAYETKRIRSLLADNMAARMSLESQRREEIIVYNREMREKATAQKVKVHARLRKANEELYLQRAWDSE-KAAAERAKRAIELGLVAAVANGKDKSKKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXEDGEDGLKTLKTQGGGVVKVNPKIFEPDRGQLLSGIVEETAKEACGGDYKLR---SIDIPEDDVDPFEAEQLAEDKAAKKIMLEN----LTRIELIQRRREKDARDKERNKRRQEWKERRLQRAHQVRALQSLKSATAKGDVESLEEALKEGRKVLLXXXDDDGTRFLCPEMRDAYVALSSAKERMGRTEILQKYKGLMAEKFVRTEPLGSDRDGRRYWVFEGDS-RIHVEVITRREGVP 1227
BLAST of mRNA_P-wetherbeei_contig6615.1.1 vs. uniprot
Match: A0A835ZE81_9STRA (DDT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE81_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 8.760e-14 Identity = 127/322 (39.44%), Postives = 161/322 (50.00%), Query Frame = 1
Query: 739 PGPSPPHTLGVDAALAGQALRVRDFCYAFREPLQLAPFGIDDLNGALRWEAGPTVLLAEVHCALLTLLLREPTRGRALWADAVAADAGSLGKDMIAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPTKGRXXXXXXXXXXAGSDGIEEELGIVPTLPIDFAPSDLLVPTTWQAMAYFLLPVLPAYRARAAAAAAADKSGAP----AVAGQGPAALQELQGLRGGLGRREHELLPVGHKLLLLELLVDAAFDTRRVKNLLEANTSARTALEAERKEELLRCAKQAKEELADRKERAMELVREQILD 1692
P P+ TL + ALR F F L L+ D L AL AGPTVLLAE HCALL LLLR+ G LWADA AA XXXXXXXXXXXXXX XXXXXXXXXX XXXXXXXXXX G+ I + P TW A+ + P L + A A AAA + G VAG P+ L+ Q L + ++ L VGHK+ LLELLV+AA + RRV + N + R +LE+ R+EE++ A+ +++LA ++E A+ +RE + D
Sbjct: 282 PRPALAKTLALPEEWRLPALRAWAFLATFGGLLGLSRCAPDALVDALNHAAGPTVLLAEAHCALLRLLLRD---GGRLWADAAAA---------APYGRVTSXXXXXXXXXXXXXXLALPPTSIGDHVADAXXXXXXXXXXXXXXXXXXXXXXXXXXXGNRAIPAAAAVTPL--------------TWPAVLRLVAPRLAPFLRTATAVAAAQQDGEAERDAGVAGSAPSQLKAWQDAIAALSQADYCSLAVGHKVALLELLVEAAHENRRVAATVAGNMATRLSLESRRREEMMAMARAERDDLAAKREAAVASLRESLRD 577
BLAST of mRNA_P-wetherbeei_contig6615.1.1 vs. uniprot
Match: A0A6H5KZ49_9PHAE (WSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ49_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.980e-12 Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 2176 LRMALATGNLAAXXXXXXXXXXXXXXGEDDDGNRWVLPELRDALVAVRKLQDVGRQAEVAGRFGRRLAEKFVRTEPVGVDRYGRRYWCFGGDDDRVYVEEMSRRTDAP 2499
L+ A A G++ + ED DG R++ PE+RDA VA+ ++ + E+ ++ +AEKFVRTEP+G DR GRRYW F GD R++VE ++RR P
Sbjct: 379 LKAATAKGDVQSLEEALKEGRKVLLEEEDGDGTRFLCPEMRDAYVALSNAKERMGRTEILQKYKGLMAEKFVRTEPLGSDRDGRRYWVFEGDS-RIHVEVITRREGVP 485 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6615.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6615.1.1 >prot_P-wetherbeei_contig6615.1.1 ID=prot_P-wetherbeei_contig6615.1.1|Name=mRNA_P-wetherbeei_contig6615.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=833bp SKDTTKQTTQRSMDGKDSMEVDYEVVPEGGEAQQNSNVEKESPASPPPSSback to top mRNA from alignment at P-wetherbeei_contig6615:533..3283+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6615.1.1 ID=mRNA_P-wetherbeei_contig6615.1.1|Name=mRNA_P-wetherbeei_contig6615.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2751bp|location=Sequence derived from alignment at P-wetherbeei_contig6615:533..3283+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6615:533..3283+ >mRNA_P-wetherbeei_contig6615.1.1 ID=mRNA_P-wetherbeei_contig6615.1.1|Name=mRNA_P-wetherbeei_contig6615.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2499bp|location=Sequence derived from alignment at P-wetherbeei_contig6615:533..3283+ (Phaeothamnion wetherbeei SAG_119_79)back to top |