mRNA_P-wetherbeei_contig66.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig66.1.1
Unique NamemRNA_P-wetherbeei_contig66.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig66.1.1 vs. uniprot
Match: A0A8K1C609_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C609_PYTOL)

HSP 1 Score: 81.6 bits (200), Expect = 5.420e-16
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 LRLSVLGLTDCNPFGLALFLTYRHGSANPAAGRMPGRYRVPTIKWIGVRPSQLGHLDLPAAALQPLKPVDAAKARALLRSDAVVGGVAALAAEVACWTTD-FGRKVEMEAL 330
            L L V+GL+DCNPFGL++ LTY+ GSA       P  + V  IKW+G+RPS++  LDLP  A + L   D A+A++L +SD  V        EV  W+   F +KVE+EAL
Sbjct:  241 LELPVIGLSDCNPFGLSIMLTYKLGSARMPLDTRP--FGV-DIKWVGLRPSRIEQLDLPPTAFKELSSKDRARAKSLAQSD-FVQSHCEYVEEVRMWSESAFSKKVELEAL 347          
BLAST of mRNA_P-wetherbeei_contig66.1.1 vs. uniprot
Match: D7G356_ECTSI (Sporulation-specific protein 11 homologue n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G356_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.960e-15
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 LRLSVLGLTDCNPFGLALFLTYRHGSANPAAGRMPGRYRVPTIKWIGVRPSQLGHLDLPAAALQPLKPVDAAKARALLRSDAVVGGVAALAAEVACW 291
            L L VLGL DCNPFGL++FL Y+ GS+    GR   ++ VP +KW+G+RPSQL  LDLP    Q L   D ++A+++  S  V         EV  W
Sbjct:  165 LDLPVLGLVDCNPFGLSVFLQYKEGSSRQ--GRGSAKFGVPEMKWVGLRPSQLDDLDLPDEVHQTLSQQDLSRAQSVANSTLVTDNPDTYGEEVEYW 259          
BLAST of mRNA_P-wetherbeei_contig66.1.1 vs. uniprot
Match: D0MT30_PHYIT (TP6A_N domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MT30_PHYIT)

HSP 1 Score: 77.4 bits (189), Expect = 1.660e-14
Identity = 50/111 (45.05%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 LRLSVLGLTDCNPFGLALFLTYRHGSANPAAGRMPGRYRVPTIKWIGVRPSQLGHLDLPAAALQPLKPVDAAKARALLRSDAVVGGVAALAAEVACWTTD-FGRKVEMEAL 330
            L + VLGL DCNPFGL++ LTY+ GSA      +  RY V  IKW+GVRPSQ+ HL LP ++ + L   D A A +L+R+  +    A    EV  W  D    K+E+EAL
Sbjct:  221 LGIPVLGLCDCNPFGLSIMLTYKLGSARMPLDSL--RYAV-DIKWVGVRPSQVSHLGLPTSSFKALTRKDLAVADSLMRASFIQAN-AFFKDEVQMWLGDALPWKIELEAL 327          
BLAST of mRNA_P-wetherbeei_contig66.1.1 vs. uniprot
Match: A0A6H5KRW2_9PHAE (TP6A_N domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW2_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.850e-14
Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    1 LRLSVLGLTDCNPFGLALFLTYRHGSANPAAGRMPGRYRVPTIKWIGVRPSQLGHLDLPAAAL--------QPLKPVDAAKARALLRSDAVVGGVAALAAEVACW 291
            L L VLGL DCNPFGL++FL Y+ GS+    GR   ++RVP +KW+G+RPSQL  LDLP  A         Q L   D A+A+++  S  V         E   W
Sbjct:  148 LDLPVLGLVDCNPFGLSVFLQYKEGSSKQ--GRGSAKFRVPEMKWVGLRPSQLDDLDLPEEASKKIITEVHQTLSQQDLARAQSVANSTLVTDNPDTYGEEAEYW 250          
BLAST of mRNA_P-wetherbeei_contig66.1.1 vs. uniprot
Match: A0A0P1AB95_PLAHL (Type ii dna topoisomerase vi subunit a 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB95_PLAHL)

HSP 1 Score: 75.5 bits (184), Expect = 8.570e-14
Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 LRLSVLGLTDCNPFGLALFLTYRHGSANPAAGRMPG---RYRVPTIKWIGVRPSQLGHLDLPAAALQPLKPVDAAKARALLRSDAVVGGVAALAAEVACWTTD-FGRKVEMEAL 330
            LR+ VLG+ DCNPFGL++ LTY+ GSA     RMP    +Y V  IKWIGVRPSQ+ ++ LPA++ + L   D A A +L+R+  +   +     EV  W  D    K+E+EAL
Sbjct:  226 LRIPVLGVCDCNPFGLSIILTYKLGSA-----RMPLESLQYAV-DIKWIGVRPSQISNIALPASSFKVLSRKDVAVANSLMRASFIQADMH-FRNEVHMWLGDALPWKIELEAL 332          
BLAST of mRNA_P-wetherbeei_contig66.1.1 vs. uniprot
Match: W2KQB5_PHYPR (TP6A_N domain-containing protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KQB5_PHYPR)

HSP 1 Score: 73.9 bits (180), Expect = 3.650e-13
Identity = 52/114 (45.61%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    1 LRLSVLGLTDCNPFGLALFLTYRHGSANPAAGRMPG---RYRVPTIKWIGVRPSQLGHLDLPAAALQPLKPVDAAKARALLRSDAVVGGVAALAAEVACWTTD-FGRKVEMEAL 330
            L + VLGL DCNPFGL++ LTY+ GSA     RMP    +Y V  IKW+GVRPSQ+  LDLP ++ + L   D A A +L RS  +         EV  W  D    K+E+EAL
Sbjct:  270 LEIPVLGLCDCNPFGLSIMLTYKLGSA-----RMPLESLQYAV-DIKWVGVRPSQIADLDLPISSFKALTRKDLAVADSLFRSSFIQANDH-FKDEVQMWLGDALPWKIELEAL 376          
BLAST of mRNA_P-wetherbeei_contig66.1.1 vs. uniprot
Match: W2PU68_PHYPN (Apple domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PU68_PHYPN)

HSP 1 Score: 73.9 bits (180), Expect = 4.190e-13
Identity = 52/114 (45.61%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    1 LRLSVLGLTDCNPFGLALFLTYRHGSANPAAGRMPG---RYRVPTIKWIGVRPSQLGHLDLPAAALQPLKPVDAAKARALLRSDAVVGGVAALAAEVACWTTD-FGRKVEMEAL 330
            L + VLGL DCNPFGL++ LTY+ GSA     RMP    +Y V  IKW+GVRPSQ+  LDLP ++ + L   D A A +L RS  +         EV  W  D    K+E+EAL
Sbjct:  394 LEIPVLGLCDCNPFGLSIMLTYKLGSA-----RMPLESLQYAV-DIKWVGVRPSQIADLDLPISSFKALTRKDLAVADSLFRSSFIQANDH-FKDEVQMWLGDALPWKIELEAL 500          
BLAST of mRNA_P-wetherbeei_contig66.1.1 vs. uniprot
Match: A0A6A3F4G6_9STRA (TP6A_N domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3F4G6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.170e-12
Identity = 52/114 (45.61%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    1 LRLSVLGLTDCNPFGLALFLTYRHGSANPAAGRMPGR---YRVPTIKWIGVRPSQLGHLDLPAAALQPLKPVDAAKARALLRSDAVVGGVAALAAEVACWTTD-FGRKVEMEAL 330
            L++ VLGL DCNPFGL++ LTY+ GSA     RMP     Y V  IKWIGVRPSQ+  L LP ++ + L   D A A +LL++  V         EV  W  D    K+E+EAL
Sbjct:  238 LKIPVLGLCDCNPFGLSIMLTYKLGSA-----RMPLESLEYAV-DIKWIGVRPSQVATLGLPQSSFKALTQKDIAVANSLLQASFVQANEH-YRREVRMWLEDSLPWKIELEAL 344          
BLAST of mRNA_P-wetherbeei_contig66.1.1 vs. uniprot
Match: G4ZQQ3_PHYSP (TP6A_N domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZQQ3_PHYSP)

HSP 1 Score: 71.6 bits (174), Expect = 2.280e-12
Identity = 51/114 (44.74%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    1 LRLSVLGLTDCNPFGLALFLTYRHGSANPAAGRMPGR---YRVPTIKWIGVRPSQLGHLDLPAAALQPLKPVDAAKARALLRSDAVVGGVAALAAEVACWTTD-FGRKVEMEAL 330
            L++ VLGL DCNPFGL++ LTY+ GSA     RMP     Y V  IKW+GVRPSQ+  L LP ++ + L   D A A +LL++  V         EV  W  D    K+E+EAL
Sbjct:  248 LKIPVLGLCDCNPFGLSIMLTYKLGSA-----RMPLESLEYAV-DIKWVGVRPSQIAALGLPQSSFKALTRKDIAVANSLLQASFVQANEH-YRDEVQMWLEDSLPWKIELEAL 354          
BLAST of mRNA_P-wetherbeei_contig66.1.1 vs. uniprot
Match: A0A836CJS5_9STRA (Spo11/DNA topoisomerase VI subunit A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.240e-12
Identity = 45/98 (45.92%), Postives = 51/98 (52.04%), Query Frame = 1
Query:    1 LRLSVLGLTDCNPFGLALFLTYRHGSANPAAGRMPGRYRVPTIKWIGVRPSQLGHLDLPAAALQPLKPVDAAKARALLRSDAVVGGVAALAAEVACWT 294
            L L   GL DC PFGL+L LTY HG A    G     Y    +KW+G+RPSQL  LDLPA A  P    D  +AR L  S  V      L AEV  W+
Sbjct:  167 LNLPAYGLVDCGPFGLSLLLTYVHGGAR--MGEQAAHYTA-DVKWLGLRPSQLDALDLPAQAYAPQSDNDQRRARTLAESIHVTARPE-LEAEVDYWS 260          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig66.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1C609_PYTOL5.420e-1645.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D7G356_ECTSI3.960e-1544.33Sporulation-specific protein 11 homologue n=1 Tax=... [more]
D0MT30_PHYIT1.660e-1445.05TP6A_N domain-containing protein n=2 Tax=Phytophth... [more]
A0A6H5KRW2_9PHAE1.850e-1442.86TP6A_N domain-containing protein (Fragment) n=1 Ta... [more]
A0A0P1AB95_PLAHL8.570e-1444.74Type ii dna topoisomerase vi subunit a 2 n=1 Tax=P... [more]
W2KQB5_PHYPR3.650e-1345.61TP6A_N domain-containing protein n=2 Tax=Phytophth... [more]
W2PU68_PHYPN4.190e-1345.61Apple domain-containing protein n=6 Tax=Phytophtho... [more]
A0A6A3F4G6_9STRA1.170e-1245.61TP6A_N domain-containing protein n=2 Tax=Phytophth... [more]
G4ZQQ3_PHYSP2.280e-1244.74TP6A_N domain-containing protein n=1 Tax=Phytophth... [more]
A0A836CJS5_9STRA4.240e-1245.92Spo11/DNA topoisomerase VI subunit A n=1 Tax=Tribo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig66contigP-wetherbeei_contig66:4..333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G356
PFAMsTP6A_N
Model size330
Max annot lvl2759|Eukaryota
KEGG koko:K10878
KEGG Pathwayko04113,map04113
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.5e-16
EggNOG OGsCOG1697@1|root,KOG2795@2759|Eukaryota
DescriptionDNA topoisomerase type II (ATP-hydrolyzing) activity
Cds size330
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186924.5354345-CDS-P-wetherbeei_contig66:3..3331683186924.5354345-CDS-P-wetherbeei_contig66:3..333Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig66 4..333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig66.1.1prot_P-wetherbeei_contig66.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig66 4..333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig66.1.1

>prot_P-wetherbeei_contig66.1.1 ID=prot_P-wetherbeei_contig66.1.1|Name=mRNA_P-wetherbeei_contig66.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
LRLSVLGLTDCNPFGLALFLTYRHGSANPAAGRMPGRYRVPTIKWIGVRP
SQLGHLDLPAAALQPLKPVDAAKARALLRSDAVVGGVAALAAEVACWTTD
FGRKVEMEAL
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mRNA from alignment at P-wetherbeei_contig66:4..333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig66.1.1 ID=mRNA_P-wetherbeei_contig66.1.1|Name=mRNA_P-wetherbeei_contig66.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig66:4..333+ (Phaeothamnion wetherbeei SAG_119_79)
CTGAGGCTGTCCGTCCTCGGCCTGACGGACTGCAACCCCTTCGGACTGGC GCTCTTCCTCACCTACCGCCACGGCTCTGCCAACCCGGCCGCCGGCCGCA TGCCCGGCCGCTACAGAGTGCCGACCATCAAGTGGATCGGCGTGCGCCCG TCGCAGCTGGGCCACCTGGACCTGCCGGCGGCGGCGCTGCAGCCACTCAA GCCTGTGGATGCGGCTAAGGCGCGGGCGCTGCTGCGGAGTGATGCCGTCG TGGGCGGGGTAGCGGCGCTGGCGGCCGAGGTGGCGTGCTGGACGACGGAT TTTGGCCGCAAGGTGGAAATGGAGGCGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig66:4..333+

>mRNA_P-wetherbeei_contig66.1.1 ID=mRNA_P-wetherbeei_contig66.1.1|Name=mRNA_P-wetherbeei_contig66.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig66:4..333+ (Phaeothamnion wetherbeei SAG_119_79)
CTGAGGCTGTCCGTCCTCGGCCTGACGGACTGCAACCCCTTCGGACTGGC
GCTCTTCCTCACCTACCGCCACGGCTCTGCCAACCCGGCCGCCGGCCGCA
TGCCCGGCCGCTACAGAGTGCCGACCATCAAGTGGATCGGCGTGCGCCCG
TCGCAGCTGGGCCACCTGGACCTGCCGGCGGCGGCGCTGCAGCCACTCAA
GCCTGTGGATGCGGCTAAGGCGCGGGCGCTGCTGCGGAGTGATGCCGTCG
TGGGCGGGGTAGCGGCGCTGGCGGCCGAGGTGGCGTGCTGGACGACGGAT
TTTGGCCGCAAGGTGGAAATGGAGGCGCTT
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