mRNA_P-wetherbeei_contig6597.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6597.1.1
Unique NamemRNA_P-wetherbeei_contig6597.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6597.1.1 vs. uniprot
Match: D7FL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL29_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.730e-65
Identity = 179/472 (37.92%), Postives = 217/472 (45.97%), Query Frame = 1
Query:   97 EGVSASETAQLQRVHAIAQAACGLLEL--FPTEVLPLWNWSAFFQLMAHTDMLLRWRAASIVALA--IKLDEQSRRRLFIRIGAL--GEAAGGDGER----SDSQL------------SSRATGKVCAEAPHPSVMAAQQAEEXXXXXXXXXXSAPK--------------------------------------------------------RPHSATSGPGTAVATATPFIRTPSAQHNIEALSIALTQPRPILLYGPAGAGKSALLREVARLIGGSSDSDGDCRTSGXXXXXXXXXXXSALLELHLDDQTDSKALLGAYVCSDIPGEFVWRPGVLAQAATAGRWVVIEDIDRAPLEVLATLVPLLEGGELEVPPRP-PLRVAPGFRLFGTVSTATLGKGGQDGGSGITLGGAADFGTLWTRVEVLPPSAPELLSAAAVMHRQLPQPLLTRMLD-MLLLLCGDGGSSSIG 1272
            E  +A+     +RVH +A+AA  LL        +  LWNWS FF L  H D L+RW A  + + +  + LDEQ RRRL     AL  G  +  D  R     + Q+            S+  TG     A  P    A+   +           AP                                                         R H    G G  V    P   T SA+ N+ +LS+ALT  RPILLYGPAG+GKS L RE ARLI  S D                    + LLELHLDDQTDSK+LLGA+ C+D+PGEF WRPG L +AA AG WV+IED+DRAP EVLA + PLLEG  L +P R  PL  APGFR+FGTV+T         G  G+ LGGAADFG LWT V V P S  E L  A   +  LP P L RML  M+    G+ G    G
Sbjct:  174 EDETAASVLLQKRVHKVAEAAHKLLSCAALSRSIAALWNWSPFFGLCRHPDALVRWHAVGVCSSSSLLGLDEQGRRRLLKAARALDGGPPSSQDSTRPCQNQEQQIRKTPQGXXXXXESTATTGSGTPAAVVPDSNDAEAISKARLDLLDDLRRAPSALVPXXXXXXXXXXXXXXXXXXXXARFTFRHHPSVADIGGILHAKTAPPSSSYSSSREHDRRHGKGGEVPMLVP---TASARRNLSSLSLALTVDRPILLYGPAGSGKSLLAREAARLISNSGDG----------VDPEPGASSTPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAAAAGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPGRTRPLIAAPGFRVFGTVTTV--------GAGGVVLGGAADFGALWTHVPVEPLSVSETLRVAKARYPGLPPPALKRMLSTMVAAKSGNSGGGGFG 624          
BLAST of mRNA_P-wetherbeei_contig6597.1.1 vs. uniprot
Match: A0A2D4C0J4_PYTIN (Cyclin-F n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0J4_PYTIN)

HSP 1 Score: 215 bits (547), Expect = 9.810e-58
Identity = 159/444 (35.81%), Postives = 219/444 (49.32%), Query Frame = 1
Query:    1 AFSRLLRPAPHLLPLALRHWSTTASPFDWLSVEGV--SASETAQLQRVHAIAQAACGLLELFPTEVLPLWNWSAFFQLMAHTDMLLRWRAASIVALAIKLDEQSRRRLFIRIGALGEAAGGDGERSDSQL--------SSRATGKVCAEAPHPSVMAAQQAEEXXXXXXXXXXSAPKRPH-SATSGPGTAVATAT--------------PFIRTPSAQHNIEALSIALTQPRPILLYGPAGAGKSALLREVARLIGGSSDSDGDCRTSGXXXXXXXXXXXSALLELHLDDQTDSKALLGAYVCSDIPGEFVWRPGVLAQAATAGRWVVIEDIDRAPLEVLATLVPLLEGGELEVPPRPPLRVA-PGFRLFGTVSTA-TLGKGGQDGGSGITLGGAADFGTLWTRVEVLPPSAPELLSAAAVMHRQLPQPLLTRMLDMLLLLCGD 1251
            A   LL   PH     L++ + +   F+++SV G   SA   A  QRV  IAQ A  LL L P E  PLWNWS+F+ L  H D+ +RW A   VA+A+++    R     ++G   ++A  DG   D +         S +   +V        V+ +    E            P   H S T+  G  + T T              P + TPS +HN+++L+IAL   RP+L+ GP G GK+A+LRE+ARL G +                        ++ELHLDDQ DSK LLG+YVC+DIPGEF W+PG L  A   GRWVVIEDIDRAP EVLA L+PLLE  E+ +P R  L VA   F++F T S    L KG Q+              ++W RV V P +  E+      M ++ P  L+ R++    L+ G+
Sbjct:  707 ALVTLLAVLPHTKHTVLQYLADSPCFFEYVSVAGATQSAHAVAVRQRVRRIAQIAYRLLSLCPQEATPLWNWSSFYPLCFHDDVRVRWLATRAVAIALRMTNTQRNAFLTQLGVHEDSAV-DGRHDDVRKIEFTEFCESQKRDQRVV------DVLLSTSESESAKSDDECASLRPVPFHESLTNVFGVLIPTNTHVVRSTAENSSLDQPLVPTPSTRHNLQSLAIALGLKRPVLVAGPGGCGKTAVLRELARLSGNTD-----------------------MVELHLDDQIDSKTLLGSYVCTDIPGEFTWQPGALTTAVLEGRWVVIEDIDRAPFEVLAALMPLLETREMVLPGRGELLVAHANFQIFATTSHGQNLPKGFQE--------------SIWARVNVQPLTDEEIEEILRAMFKRFPSELIQRVMATFSLVSGN 1106          
BLAST of mRNA_P-wetherbeei_contig6597.1.1 vs. uniprot
Match: A0A6H5JB27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB27_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 1.070e-53
Identity = 130/284 (45.77%), Postives = 153/284 (53.87%), Query Frame = 1
Query:  556 FIRTPSAQHNIEALSIALTQPRPILLYGPAGAGKSALLREVARLIGGSSDS---------------------DGD-------------------CRTSGXXXXXXXXXXXSALLELHLDDQTDSKALLGAYVCSDIPGEFVWRPGVLAQAATAGRWVVIEDIDRAPLEVLATLVPLLEGGELEVPPRP-PLRVAPGFRLFGTVSTATLGKGGQDGGSGITLGGAADFGTLWTRVEVLPPSAPELLSAAAVMHRQLPQPLLTRMLDMLLLL------CGDGGSSS 1266
             + T SA+ N+ +LS+ALT  RPILL+GPAG+GKS L RE ARLI  S                          D                   C   G           +ALLELHLDDQTDSK+LLGA+ C+D+PGEF WRPG L  AA AG WV+IED+DRAP EVLA + PLLEG  L +P R  PL  APGFR+FGTV+T         G  G+ LGGAADFG LWT V V P S  E L  A   +  LP P L RML  ++        CG  GS+S
Sbjct:  401 LVPTASARRNLSSLSLALTVDRPILLHGPAGSGKSLLAREAARLISNSGAGMTVRPQLKVQPVILNQPRQSIQNDIHVLTNLAASPHAALNPIPCEADGVDPDPGASS--TALLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTHAAAAGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPGRTRPLIAAPGFRVFGTVTTV--------GAGGVVLGGAADFGALWTHVPVEPLSVSETLHVAKARYPGLPLPALKRMLRTMVAAKSGNSGCGGFGSAS 674          
BLAST of mRNA_P-wetherbeei_contig6597.1.1 vs. uniprot
Match: A0A8K1FNU7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNU7_PYTOL)

HSP 1 Score: 196 bits (498), Expect = 3.250e-51
Identity = 145/444 (32.66%), Postives = 213/444 (47.97%), Query Frame = 1
Query:    1 AFSRLLRPAPHLLPLALRHWSTTASPFDWLSVEGVSASETAQLQ-RVHAIAQAACGLLELFPTEVLPLWNWSAFFQLMAHTDMLLRWRAASIVALAIKLDEQSRRRLFIRIGALGEAAGGDGE------------RSDSQLSSRATGKVCAEAPHPSVMAAQQAEEXXXXXXXXXXS------APKRPHSATSGPGTAVATATPFIRTPSAQHNIEALSIALTQPRPILLYGPAGAGKSALLREVARLIGGSSDSDGDCRTSGXXXXXXXXXXXSALLELHLDDQTDSKALLGAYVCSDIPGEFVWRPGVLAQAATAGRWVVIEDIDRAPLEVLATLVPLLEGGELEVPPRPPLRVA-PGFRLFGTVSTA-TLGKGGQDGGSGITLGGAADFGTLWTRVEVLPPSAPELLSAAAVMHRQLPQPLLTRMLDMLLLLCGDGGSSSI 1269
            A   LL   P    L L+++  +   F+++S+      +T  ++ R+  + Q    LL L+P E  P+WNWS+ + L  H D+ +RW AA IVAL +++  Q +R  F+    +GE A  DG             R D+    +    +  +  +P      Q             +       P   H          A+    + T S + N+++L+IAL   RPIL+ GP G GK+A+LRE+ R I G+ D                      ++ELHLDDQ DSK LLG+YVC+DIPGEF W+PG L  A   GRWVVIEDI+RAP EVLA L+PLLE  E+ +P R  L VA   F++F T S    + KG Q+              ++W RV+V P    E+      M  ++P  L+ R++    ++CG   S  +
Sbjct:  144 ALVTLLAFLPQTKHLVLQYFLESPCFFEYVSIASSEKEQTPGVRARLRRVVQVVYRLLHLYPQECTPMWNWSSMYPLAFHDDVRVRWYAARIVALVLRMSNQ-KRNAFLHELEIGEDAAVDGRHGVVRQIEIEEHRFDNSRQQQRVELIMDDDEYPFSEELMQENASRPVPFHESLTNVYGVIVPTNTHRRRQQDHNDNASTDKLVPTSSTKSNLQSLAIALGLKRPILVAGPGGCGKTAVLRELGR-ISGNDD----------------------MVELHLDDQIDSKTLLGSYVCTDIPGEFTWQPGALTTAVLEGRWVVIEDIERAPFEVLAALMPLLETREMVLPGRGELLVAHSNFQIFATTSHGQNMPKGFQE--------------SMWARVDVHPLGDNEIEEILLAMFGRIPPRLIKRVMTTFNVVCGKEQSEDM 549          
BLAST of mRNA_P-wetherbeei_contig6597.1.1 vs. uniprot
Match: A0A5D6XYG6_9STRA (VWFA domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYG6_9STRA)

HSP 1 Score: 196 bits (497), Expect = 4.400e-51
Identity = 144/452 (31.86%), Postives = 221/452 (48.89%), Query Frame = 1
Query:    1 AFSRLLRPAPHLLPLALRHWSTTASPFDWLSVEGVSASETAQLQRVHA---------IAQAACGLLELFPTEVLPLWNWSAFFQLMAHTDMLLRWRAASIVALAIKLDEQSRRRLFIRIGALGEAAGGDGERSDSQL---------SSRATGKVCAEAPHPSVMAAQQAEEXXXXXXXXXXSA---------PKRPHSATSGPGTAVATATPFIRTPSAQHNIEALSIALTQPRPILLYGPAGAGKSALLREVARLIGGSSDSDGDCRTSGXXXXXXXXXXXSALLELHLDDQTDSKALLGAYVCSDIPGEFVWRPGVLAQAATAGRWVVIEDIDRAPLEVLATLVPLLEGGELEVPPRPPLRVA-PGFRLFGTVSTA-TLGKGGQDGGSGITLGGAADFGTLWTRVEVLPPSAPELLSAAAVMHRQLPQPLLTRMLDMLLLLCGDGGSSSI 1269
            A + +L   P  L +  +H+      F++++V   +A+++ Q Q+ HA         I + A  LL L P     LWNWS FF L  H D  +RW AA   A+ +++    R      +G +GE A   G+ +D +          +++   ++   A   SV A++ ++           S            + H A   P        P + T S + N+++L+IAL   RPIL+ G  G GK+A++RE+ARL G                          ++ELHLDDQ DSK LLG+YVC+DIPGEF W+PG L  A  +GRWVVIEDIDRAP EVLA L+PLLE  E+ +P R  L VA   F++FGT      + KG Q+              ++WT V+ LP    E+         ++P+ ++T+++    L+ G+G ++++
Sbjct:  122 ALADVLALLPQTLGVVQQHFLDAPCFFEFVNV---AAAQSKQQQQAHAPEVQARLREIVRTALRLLRLQPHGFRSLWNWSGFFPLCFHADARIRWYAARTTAIVLQMSNVQRNAFVNGLG-VGEDAAASGKHADVRAVELEEFQLDANQQEERIRMTAYEESVPASEDSDSGDAHDVAFHDSLRNIFGVIVPTSKRHEAVGAP----VAMEPLVATASTKRNLQSLAIALGLKRPILVAGAGGCGKTAMIRELARLSGNDD-----------------------MVELHLDDQIDSKTLLGSYVCTDIPGEFTWQPGALTTAVQSGRWVVIEDIDRAPFEVLAALMPLLETREMVIPGRGELLVAHSNFQIFGTTCHGHNMPKGFQE--------------SIWTHVDALPLRDDEIEEVMQTRFERIPRRVVTKIMTTYNLVSGNGDTAAL 528          
BLAST of mRNA_P-wetherbeei_contig6597.1.1 vs. uniprot
Match: A0A0W8D5B3_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D5B3_PHYNI)

HSP 1 Score: 191 bits (485), Expect = 1.030e-49
Identity = 147/443 (33.18%), Postives = 213/443 (48.08%), Query Frame = 1
Query:    7 SRLLRPAPHLLPLALRHWSTTASPFDWLSVEGVSASETAQ-LQRVHAIAQAACGLLELFPTEVLPLWNWSAFFQLMAHTDMLLRWRAASIVALAIKLDEQSRRRLF--IRIGALGEAAGGDGERSDSQLSSRATGKVCAEAP-HPSVMAAQQAEEXXXXXXXXXXSA-----------PKRPHSATSGPGTAVATATPFIRTPSAQHNIEALSIALTQPRPILLYGPAGAGKSALLREVARLIGGSSDSDGDCRTSGXXXXXXXXXXXSALLELHLDDQTDSKALLGAYVCSDIPGEFVWRPGVLAQAATAGRWVVIEDIDRAPLEVLATLVPLLEGGELEVPPRPPLRVA-PGFRLFGTVSTA-TLGKGGQDGGSGITLGGAADFGTLWTRVEVLPPSAPELLSAAAVMHRQLPQPLLTRMLDMLLLLCGD-----GGSSSI 1269
            + LL   P    L  +++ T    F +  V      ++ + L R+  IA+ A  LL   PTE+  LWNW++FF L  H D+ +RW AA   AL +K+    R      +++G     +G        +L   +      E     SV   Q A E           +            K          +++AT  P + TPS + N+++L+IAL   RPIL+ GP G GK+A +RE+ARL G S                        ++ELHLDDQ DSK LLG+YVC+D+PGEF W+PG L  A  AGRWVVIEDIDRAP EVLA L+PLLE  E+ +P R  L VA   F++FGT +    + KG Q+              ++WT V V P +  E+         ++PQ ++++M+     + G+     GGS+ +
Sbjct:  142 AELLTYLPATSTLVQQYFETAPCFFAFADVVATQKQQSDETLVRLRRIAKTAFQLLRARPTELTALWNWTSFFPLSFHDDVHVRWYAARATALVLKMSNAQRNTFLDGLKVGEDAAVSGNSPAVRQIELELHSEDATRQEQLIELSVYQQQDANEVAQTQPVPFHDSLQNIFGVVVPTSKLHQQRHESEESSIATE-PLVPTPSTKRNLQSLAIALGLKRPILVAGPGGCGKTATIRELARLSGNSD-----------------------MVELHLDDQIDSKTLLGSYVCTDVPGEFAWQPGALTTAVLAGRWVVIEDIDRAPFEVLAALMPLLETREMVLPGRGELLVAHSNFQIFGTTTHGHQMPKGFQE--------------SVWTSVGVAPLADSEIEQIMLTRFTKIPQQVVSKMMTTYNAVSGNTSEEIGGSAQL 546          
BLAST of mRNA_P-wetherbeei_contig6597.1.1 vs. uniprot
Match: A0A662YAW0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAW0_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.370e-49
Identity = 143/403 (35.48%), Postives = 194/403 (48.14%), Query Frame = 1
Query:    1 AFSRLLRPAPHLLPLALRHWSTTASPFDWLSVEGVSASET-AQLQRVHAIAQAACGLLELFPTEVLPLWNWSAFFQLMAHTDMLLRWRAASIVALAIKLDEQSRRRLFIRIGALGEAAGGDGERS---DSQLSSRATGKVCAEAPHPSVMAAQQAEEXXXXXXXXXXSAPKRPHSATSG---------------PGTAVATATPFIRTPSAQHNIEALSIALTQPRPILLYGPAGAGKSALLREVARLIGGSSDSDGDCRTSGXXXXXXXXXXXSALLELHLDDQTDSKALLGAYVCSDIPGEFVWRPGVLAQAATAGRWVVIEDIDRAPLEVLATLVPLLEGGELEVPPRPPLRVA-PGFRLFGTVSTA-TLGKGGQDGGSGITLGGAADFGTLWTRVEVLP 1146
            A + LL   P    +  +++ TT   F +  V  +   ++ A ++R+  IA  AC LL L   E+   WNW+AFF L  H D  +RW AA   AL +++    R   F+    +GE A   GE       +L+      +  E     V+A    +E          S     H +                  P    A+  P + TPS + N+++L+IAL   RPIL+ G  G GK+A +RE+ARL G                          L+ELHLDDQ DSK LLG+YVC+DIPGEF W+PG L  A  AGRWVV+EDIDRAP EVLA L+PLLE  E+ +P R  L VA   F++FGT S    + KG Q+              ++WTRV V P
Sbjct:  156 ALAELLAFLPPTNTVVQQYFLTTPCFFAFADVAAMQKQQSDATVKRLRRIASTACRLLRLRSLELTTQWNWTAFFPLSFHEDTQVRWHAARATALILQMGNAQRNE-FLNGLHVGENAAVGGELPAVRQIELAEHRANVIRQEQ----VIALSVLQEQQQYEDIGAASRVVPFHDSLKSIFGVVVPTNKLHQQQPSLEEASTNPLVPTPSTKRNLQSLAIALGLKRPILVAGAGGCGKTATIRELARLSGNDD-----------------------LVELHLDDQIDSKTLLGSYVCTDIPGEFTWQPGALTTAVLAGRWVVVEDIDRAPFEVLAALMPLLETREMVLPGRGELLVAHSNFQIFGTTSHGHQMPKGFQE--------------SVWTRVNVAP 516          
BLAST of mRNA_P-wetherbeei_contig6597.1.1 vs. uniprot
Match: D0NH58_PHYIT (Midasin n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NH58_PHYIT)

HSP 1 Score: 191 bits (485), Expect = 1.680e-49
Identity = 142/403 (35.24%), Postives = 203/403 (50.37%), Query Frame = 1
Query:  127 LQRVHAIAQAACGLLELFPTEVLPLWNWSAFFQLMAHTDMLLRWRAASIVALAIKLDEQSRRRLFIRIGALGEAAGGDGERS-----DSQLSSRATGKVCAEAPHPSVMAAQQAEEXXXXXXXXXXSA----------PKRPHSATSGPGTAVATATPFIRTPSAQHNIEALSIALTQPRPILLYGPAGAGKSALLREVARLIGGSSDSDGDCRTSGXXXXXXXXXXXSALLELHLDDQTDSKALLGAYVCSDIPGEFVWRPGVLAQAATAGRWVVIEDIDRAPLEVLATLVPLLEGGELEVPPRPPLRVA-PGFRLFGTVSTA-TLGKGGQDGGSGITLGGAADFGTLWTRVEVLPPSAPELLSAAAVMHRQLPQPLLTRMLDMLLLLCGD-----GGSSSI 1269
            L R+  IA+ A  LL   PTE+  LWNW+ FF L  H D+ +RW AA   AL +K+   ++R  F+   ++GE A   G  S     + +L S    +   +    SV   Q   E           +            + H        +  T  P + TPS + N+++L+IAL   RPIL+ GP G GK+A +RE+ARL G     +GD                  ++ELHLDDQ DSK LLG+YVC+D+PGEF W+PG L  A  AGRWVV+EDIDRAP EVLA L+PLLE  E+ +P R  L VA   F++FGT +    + KG Q+              ++WT V V P +  E+         ++PQ ++++M+     + G+     GGS+ +
Sbjct:  181 LDRLRRIAKTAFQLLRARPTELTALWNWTPFFPLSFHDDVHVRWYAARATALVLKMSN-AQRSAFLAGLSVGEDAAVSGSSSTVRQIELELHSEDATRQ-EQLIELSVHQQQDGNEVAETQPVPFHDSLQNIFGVVIPTSKLHQQRHESEESSMTVEPLVPTPSTKRNLQSLAIALGLKRPILVAGPGGCGKTATIRELARLSG-----NGD------------------MVELHLDDQIDSKTLLGSYVCTDVPGEFTWQPGALTTAVLAGRWVVVEDIDRAPFEVLAALMPLLETREMVLPGRGELLVAHSNFQIFGTTTHGHQMPKGFQE--------------SVWTSVSVAPLADTEIEQIMLTRFAKIPQQVVSKMMTTYNAVSGNTSEEIGGSAQL 544          
BLAST of mRNA_P-wetherbeei_contig6597.1.1 vs. uniprot
Match: W2Q5P2_PHYPN (VWFA domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q5P2_PHYPN)

HSP 1 Score: 191 bits (485), Expect = 1.690e-49
Identity = 147/443 (33.18%), Postives = 213/443 (48.08%), Query Frame = 1
Query:    7 SRLLRPAPHLLPLALRHWSTTASPFDWLSVEGVSASETAQ-LQRVHAIAQAACGLLELFPTEVLPLWNWSAFFQLMAHTDMLLRWRAASIVALAIKLDEQSRRRLF--IRIGALGEAAGGDGERSDSQLSSRATGKVCAEAP-HPSVMAAQQAEEXXXXXXXXXXSA-----------PKRPHSATSGPGTAVATATPFIRTPSAQHNIEALSIALTQPRPILLYGPAGAGKSALLREVARLIGGSSDSDGDCRTSGXXXXXXXXXXXSALLELHLDDQTDSKALLGAYVCSDIPGEFVWRPGVLAQAATAGRWVVIEDIDRAPLEVLATLVPLLEGGELEVPPRPPLRVA-PGFRLFGTVSTA-TLGKGGQDGGSGITLGGAADFGTLWTRVEVLPPSAPELLSAAAVMHRQLPQPLLTRMLDMLLLLCGD-----GGSSSI 1269
            + LL   P    L  +++ T    F +  V      ++ + L R+  IA+ A  LL   PTE+  LWNW++FF L  H D+ +RW AA   AL +K+    R      +++G     +G        +L   +      E     SV   Q A E           +            K          +++AT  P + TPS + N+++L+IAL   RPIL+ GP G GK+A +RE+ARL G S                        ++ELHLDDQ DSK LLG+YVC+D+PGEF W+PG L  A  AGRWVVIEDIDRAP EVLA L+PLLE  E+ +P R  L VA   F++FGT +    + KG Q+              ++WT V V P +  E+         ++PQ ++++M+     + G+     GGS+ +
Sbjct:  142 AELLTYLPATSTLVQQYFETAPCFFAFADVVATQKQQSDETLVRLRRIAKTAFQLLRARPTELTALWNWTSFFPLSFHDDVHVRWYAARATALVLKMSNAQRNTFLDGLKVGEDAAVSGNSPAVRQIELELHSEDATRQEQLIELSVYQQQDANEVAQTQPVPFHDSLQNIFGVVVPTSKLHQQRHESEESSIATE-PLVPTPSTKRNLQSLAIALGLKRPILVAGPGGCGKTATIRELARLSGNSD-----------------------MVELHLDDQIDSKTLLGSYVCTDVPGEFAWQPGALTTAVLAGRWVVIEDIDRAPFEVLAALMPLLETREMVLPGRGELLVAHSNFQIFGTTTHGHQMPKGFQE--------------SVWTSVGVAPLADSEIEQIMLTRFTKIPQQVVSKMMTTYNAVSGNTSEEIGGSAQL 546          
BLAST of mRNA_P-wetherbeei_contig6597.1.1 vs. uniprot
Match: H3GJC4_PHYRM (VWFA domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJC4_PHYRM)

HSP 1 Score: 191 bits (485), Expect = 1.690e-49
Identity = 134/382 (35.08%), Postives = 189/382 (49.48%), Query Frame = 1
Query:  127 LQRVHAIAQAACGLLELFPTEVLPLWNWSAFFQLMAHTDMLLRWRAASIVALAIKLDEQSRRRLFIRIGALGEAAGGDGERSDSQLSSRATGKVCAEAPHPSVMAAQQAEEXXXXXXXXXXS--------------APKRPHSATSGPGTAVATATPFIRTPSAQHNIEALSIALTQPRPILLYGPAGAGKSALLREVARLIGGSSDSDGDCRTSGXXXXXXXXXXXSALLELHLDDQTDSKALLGAYVCSDIPGEFVWRPGVLAQAATAGRWVVIEDIDRAPLEVLATLVPLLEGGELEVPPRPPLRVA-PGFRLFGTVSTA-TLGKGGQDGGSGITLGGAADFGTLWTRVEVLPPSAPELLSAAAVMHRQLPQPLLTRML 1224
            LQR+  IA+ A  LL L PTE+  LWNW+ FF L  H D  +RW AA   AL +++    R      +G   +AA      +  Q+      +          ++  Q ++                           K      + P  + AT  P + TPS + N+++L+IAL   RPIL+ GP G GK+A +RE+ARL G     +GD                  ++ELHLDDQ DSK LLG+YVC+D+PGEF W+PG L  A  AGRWVVIEDIDRAP EVLA L+PLLE  E+ +P R  L VA   F++FGT +    + KG Q+              ++WT V V P    E+         ++P+ ++++M+
Sbjct:  162 LQRLRRIAKTAFQLLRLRPTELTTLWNWTPFFSLSCHDDTHVRWFAARATALVLRMGNAQRNAFLNGLGVSEDAAASGDSPATRQIELELHVEDATRQEQLIELSVYQQQDDAEVGETQPVPFHDSLENIFGVVVPTSKLNQQGHASPEDSTATE-PLVPTPSTKRNLQSLAIALGLKRPILVAGPGGCGKTATIRELARLSG-----NGD------------------MVELHLDDQIDSKTLLGSYVCTDVPGEFTWQPGALTTAVLAGRWVVIEDIDRAPFEVLAALMPLLETREMVLPGRGELLVAHSNFQIFGTTTHGHQMPKGFQE--------------SVWTSVNVAPLVDSEIEQIMLTRFVKIPRQVVSKMM 505          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6597.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL29_ECTSI1.730e-6537.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4C0J4_PYTIN9.810e-5835.81Cyclin-F n=1 Tax=Pythium insidiosum TaxID=114742 R... [more]
A0A6H5JB27_9PHAE1.070e-5345.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1FNU7_PYTOL3.250e-5132.66Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XYG6_9STRA4.400e-5131.86VWFA domain-containing protein n=1 Tax=Pythium bra... [more]
A0A0W8D5B3_PHYNI1.030e-4933.18Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A662YAW0_9STRA1.370e-4935.48Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
D0NH58_PHYIT1.680e-4935.24Midasin n=2 Tax=Phytophthora infestans TaxID=4787 ... [more]
W2Q5P2_PHYPN1.690e-4933.18VWFA domain-containing protein n=9 Tax=Phytophthor... [more]
H3GJC4_PHYRM1.690e-4935.08VWFA domain-containing protein n=1 Tax=Phytophthor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6597contigP-wetherbeei_contig6597:35..1486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FL29
PFAMsAAA_5,DUF2420,zf-RVT
Model size1272
Max annot lvl2759|Eukaryota
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.14e-76
EggNOG OGsCOG5271@1|root,KOG1808@2759|Eukaryota
DescriptionNuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
Cds size1272
COG categoryM
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186924.3302326-CDS-P-wetherbeei_contig6597:34..8091683186924.3302326-CDS-P-wetherbeei_contig6597:34..809Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6597 35..809 -
1683186924.3450568-CDS-P-wetherbeei_contig6597:989..14861683186924.3450568-CDS-P-wetherbeei_contig6597:989..1486Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6597 990..1486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6597.1.1prot_P-wetherbeei_contig6597.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6597 35..1486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6597.1.1

>prot_P-wetherbeei_contig6597.1.1 ID=prot_P-wetherbeei_contig6597.1.1|Name=mRNA_P-wetherbeei_contig6597.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=424bp
AFSRLLRPAPHLLPLALRHWSTTASPFDWLSVEGVSASETAQLQRVHAIA
QAACGLLELFPTEVLPLWNWSAFFQLMAHTDMLLRWRAASIVALAIKLDE
QSRRRLFIRIGALGEAAGGDGERSDSQLSSRATGKVCAEAPHPSVMAAQQ
AEEAAHASAAAAFSAPKRPHSATSGPGTAVATATPFIRTPSAQHNIEALS
IALTQPRPILLYGPAGAGKSALLREVARLIGGSSDSDGDCRTSGSGGDGD
TASSSSALLELHLDDQTDSKALLGAYVCSDIPGEFVWRPGVLAQAATAGR
WVVIEDIDRAPLEVLATLVPLLEGGELEVPPRPPLRVAPGFRLFGTVSTA
TLGKGGQDGGSGITLGGAADFGTLWTRVEVLPPSAPELLSAAAVMHRQLP
QPLLTRMLDMLLLLCGDGGSSSIG
back to top

mRNA from alignment at P-wetherbeei_contig6597:35..1486-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6597.1.1 ID=mRNA_P-wetherbeei_contig6597.1.1|Name=mRNA_P-wetherbeei_contig6597.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1452bp|location=Sequence derived from alignment at P-wetherbeei_contig6597:35..1486- (Phaeothamnion wetherbeei SAG_119_79)
GCGTTCAGCCGCTTGCTTCGGCCGGCGCCTCACCTCCTCCCGCTGGCGCT GCGGCACTGGTCGACCACTGCTTCACCATTTGACTGGCTGTCAGTTGAAG GAGTCAGCGCGTCTGAGACCGCACAGCTGCAACGTGTGCACGCGATAGCC CAGGCAGCTTGCGGGCTGCTGGAGCTCTTCCCGACCGAGGTGCTGCCTCT CTGGAACTGGTCGGCCTTCTTTCAGCTAATGGCACATACCGACATGCTGC TGCGCTGGCGTGCCGCGTCCATCGTGGCGCTGGCCATCAAACTGGACGAG CAGAGCCGCCGGCGACTGTTCATCCGCATCGGAGCTCTCGGGGAAGCAGC AGGAGGCGACGGCGAGCGTTCGGACTCTCAGCTTTCTTCACGGGCGACAG GCAAAGTATGCGCTGAGGCGCCACACCCGTCAGTGATGGCGGCGCAGCAG GCCGAAGAGGCCGCGCATGCGTCAGCAGCCGCGGCATTTAGTGCGCCGTG GCCCTTCGCGACCACAATTTTGCGATCACATAGAGACGAAGAAGAGCCGG AGGAAGGAGGCGAGGCGGCGAATAGATTATACTTTTTGCAAGACGACACG TCGTGGCTTCACCCCGACATTGTCAGCATCGGAGGGATAGTGCACGTGCG CGCTGTCCCACGCGCGCTCGGCGTGAGGAAGCGGCCGCATTCAGCGACTT CAGGACCGGGCACAGCGGTGGCCACCGCCACACCTTTCATACGCACTCCA TCAGCACAACACAACATCGAAGCGCTTTCCATTGCGCTGACGCAGCCGAG GCCCATCCTGCTGTACGGACCTGCGGGAGCGGGCAAGAGCGCGCTGCTAC GAGAAGTGGCAAGACTCATTGGCGGCAGCAGCGATAGCGATGGCGATTGC AGGACGAGCGGCAGCGGCGGCGACGGGGACACGGCCTCAAGTTCGTCCGC CCTCCTGGAGCTGCACCTGGATGACCAGACGGACAGCAAGGCGCTCTTGG GCGCTTACGTATGCTCGGACATTCCCGGCGAATTCGTATGGCGGCCGGGA GTGCTGGCGCAGGCGGCGACGGCAGGCCGCTGGGTGGTCATCGAGGACAT CGATCGCGCCCCGCTGGAAGTTTTGGCGACGCTCGTGCCTCTGCTGGAAG GCGGCGAGCTCGAAGTGCCGCCGCGCCCGCCGCTGCGGGTGGCGCCCGGC TTCCGCCTGTTCGGGACAGTCTCGACGGCGACGCTGGGGAAAGGGGGCCA GGACGGCGGAAGCGGCATCACCTTGGGCGGTGCGGCCGACTTTGGAACGC TCTGGACGCGCGTCGAGGTGCTGCCGCCATCGGCGCCGGAGCTGCTGTCT GCGGCGGCGGTGATGCACCGGCAGCTGCCACAGCCACTTCTGACGCGCAT GTTAGACATGCTGCTCCTATTGTGTGGCGACGGCGGCAGTAGCAGTATTG GC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6597:35..1486-

>mRNA_P-wetherbeei_contig6597.1.1 ID=mRNA_P-wetherbeei_contig6597.1.1|Name=mRNA_P-wetherbeei_contig6597.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1272bp|location=Sequence derived from alignment at P-wetherbeei_contig6597:35..1486- (Phaeothamnion wetherbeei SAG_119_79)
GCGTTCAGCCGCTTGCTTCGGCCGGCGCCTCACCTCCTCCCGCTGGCGCT
GCGGCACTGGTCGACCACTGCTTCACCATTTGACTGGCTGTCAGTTGAAG
GAGTCAGCGCGTCTGAGACCGCACAGCTGCAACGTGTGCACGCGATAGCC
CAGGCAGCTTGCGGGCTGCTGGAGCTCTTCCCGACCGAGGTGCTGCCTCT
CTGGAACTGGTCGGCCTTCTTTCAGCTAATGGCACATACCGACATGCTGC
TGCGCTGGCGTGCCGCGTCCATCGTGGCGCTGGCCATCAAACTGGACGAG
CAGAGCCGCCGGCGACTGTTCATCCGCATCGGAGCTCTCGGGGAAGCAGC
AGGAGGCGACGGCGAGCGTTCGGACTCTCAGCTTTCTTCACGGGCGACAG
GCAAAGTATGCGCTGAGGCGCCACACCCGTCAGTGATGGCGGCGCAGCAG
GCCGAAGAGGCCGCGCATGCGTCAGCAGCCGCGGCATTTAGTGCGCCGAA
GCGGCCGCATTCAGCGACTTCAGGACCGGGCACAGCGGTGGCCACCGCCA
CACCTTTCATACGCACTCCATCAGCACAACACAACATCGAAGCGCTTTCC
ATTGCGCTGACGCAGCCGAGGCCCATCCTGCTGTACGGACCTGCGGGAGC
GGGCAAGAGCGCGCTGCTACGAGAAGTGGCAAGACTCATTGGCGGCAGCA
GCGATAGCGATGGCGATTGCAGGACGAGCGGCAGCGGCGGCGACGGGGAC
ACGGCCTCAAGTTCGTCCGCCCTCCTGGAGCTGCACCTGGATGACCAGAC
GGACAGCAAGGCGCTCTTGGGCGCTTACGTATGCTCGGACATTCCCGGCG
AATTCGTATGGCGGCCGGGAGTGCTGGCGCAGGCGGCGACGGCAGGCCGC
TGGGTGGTCATCGAGGACATCGATCGCGCCCCGCTGGAAGTTTTGGCGAC
GCTCGTGCCTCTGCTGGAAGGCGGCGAGCTCGAAGTGCCGCCGCGCCCGC
CGCTGCGGGTGGCGCCCGGCTTCCGCCTGTTCGGGACAGTCTCGACGGCG
ACGCTGGGGAAAGGGGGCCAGGACGGCGGAAGCGGCATCACCTTGGGCGG
TGCGGCCGACTTTGGAACGCTCTGGACGCGCGTCGAGGTGCTGCCGCCAT
CGGCGCCGGAGCTGCTGTCTGCGGCGGCGGTGATGCACCGGCAGCTGCCA
CAGCCACTTCTGACGCGCATGTTAGACATGCTGCTCCTATTGTGTGGCGA
CGGCGGCAGTAGCAGTATTGGC
back to top