mRNA_P-wetherbeei_contig6593.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6593.3.1
Unique NamemRNA_P-wetherbeei_contig6593.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6593.3.1 vs. uniprot
Match: A0A3C0TT33_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TT33_9PROT)

HSP 1 Score: 214 bits (545), Expect = 1.920e-68
Identity = 106/159 (66.67%), Postives = 126/159 (79.25%), Query Frame = 1
Query:    1 AFAGEAEFELCQGTSENAVIRAANCDIAIRMGGLSDEQLIVALFNRGQTALASEKPDKALEDFDAILKLAPDDKKALFTRGIAHRQLKQYEDAIADFDRLLALNYQPAAKIYLNRSMAYHMLGNKEKSLADLRQAKALDPKDPVITDRLWKTERLYKQQ 477
            A AGEAEFE CQG +ENAVIRAANC++AIR+GGLS EQ+IVALFNRGQ  L +E+P  AL DFDA+L+L PDDK  L  R I  RQLK  + A+AD  RL ALNYQPAA++YLNRSM YH+ G ++K+LADLR+A  LDP + +I DRLWKTERLYK Q
Sbjct:   21 ALAGEAEFEACQGPAENAVIRAANCNLAIRLGGLSREQMIVALFNRGQAYLTTERPATALPDFDALLELEPDDKDGLMIRAITRRQLKDLDGALADLRRLEALNYQPAAQLYLNRSMVYHLKGERDKTLADLRKALELDPNNGIIKDRLWKTERLYKMQ 179          
BLAST of mRNA_P-wetherbeei_contig6593.3.1 vs. uniprot
Match: A0A351T1C2_9PROT (Uncharacterized protein n=6 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T1C2_9PROT)

HSP 1 Score: 134 bits (336), Expect = 4.170e-36
Identity = 68/151 (45.03%), Postives = 96/151 (63.58%), Query Frame = 1
Query:   19 EFELCQGTSENAVIRAANCDIAIRMGGLSDEQLIVALFNRGQTALASEKPDKALEDFDAILKLAPDDKKALFTRGIAHRQLKQYEDAIADFDRLLALNYQPAAKIYLNRSMAYHMLGNKEKSLADLRQAKALDPKDPVITDRLWKTERLYK 471
            +  LC     N  IR ANC + +  G LSD     AL+NRGQ  LA  + +KAL+DF+A L++APD +  L  R    R+L QYE AIAD+DRLL+ +Y+P A +Y NR +AYH L  +E+++ D+ +A ALDP +    + L +T+RLYK
Sbjct:   83 DLSLCTDKVANHTIRIANCSMVLTAGDLSDNARGAALYNRGQAYLAQGQAEKALDDFNAALEIAPDSEDLLLNRAATLRKLGQYEAAIADYDRLLSRDYEPRAALYFNRGIAYHYLNKEEEAIRDMEKAYALDPGNLHFLETLDQTKRLYK 233          
BLAST of mRNA_P-wetherbeei_contig6593.3.1 vs. uniprot
Match: UPI0004632EC9 (tetratricopeptide repeat protein n=1 Tax=Bradyrhizobium sp. ARR65 TaxID=1040989 RepID=UPI0004632EC9)

HSP 1 Score: 64.3 bits (155), Expect = 3.480e-9
Identity = 43/132 (32.58%), Postives = 69/132 (52.27%), Query Frame = 1
Query:   37 GTSENAVIRAANCDIAIRMGGLSDEQLIVALFNRGQTALASEKPDKALEDFDAILKLAPDDKKALFTRGIAHRQLKQYEDAIADFDRLLALNYQP-AAKIYLNRSMAYHMLGNKEKSLADLRQAKALDPKDP 429
            G   N ++ A  C   I  G ++  QL  A   RG      + PD+AL+DFDA LK+ P+   AL  R   +    +++ AI D +R + L     AA+ +  R  +Y  L N +K++ADL +A+ ++P +P
Sbjct:   92 GADLNPLVEA--CTRLIESGKVASPQLAAAYNQRGFIQRLKQ-PDRALQDFDAALKIQPNYAFALVNRAFIYMMRSRFDSAIEDLNRAIDLLAPGLAARAHYLRGFSYARLKNYDKAIADLDEAQRVEPNNP 220          
BLAST of mRNA_P-wetherbeei_contig6593.3.1 vs. uniprot
Match: A0A3B0RVV1_9ZZZZ (TPR domain protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0RVV1_9ZZZZ)

HSP 1 Score: 58.5 bits (140), Expect = 5.100e-7
Identity = 33/111 (29.73%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  124 ALFNRGQTALASEKPDKALEDFDAILKLAPDDKKALFTRGIAHRQLKQYEDAIADFDRLLALNYQPAAK---IYLNRSMAYHMLGNKEKSLADLRQAKALDPKDPVITDRL 447
            A   R ++   + K D A+E  + +++  PD      + G  +RQL+Q++DA+A +D+ +AL     ++   +Y  R++++  L N +KS AD R A  L+P  P + + L
Sbjct:  327 AELGRSESLRKAGKTDAAIEVLEQLMQSHPDQPVVFVSAGDLYRQLEQFDDAVAAYDKAVALYTDRDSEQWFVYYARAISHERLDNWDKSEADFRYALKLNPNQPQVLNYL 437          
BLAST of mRNA_P-wetherbeei_contig6593.3.1 vs. uniprot
Match: A0A6P2BJE7_9GAMM (Tetratricopeptide repeat protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6P2BJE7_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 7.020e-7
Identity = 36/116 (31.03%), Postives = 56/116 (48.28%), Query Frame = 1
Query:   73 CDIAIRMGGLSDEQLIVALFNRGQTALASEKPDKALEDFDAILKLAPDDKKALFTRGIAHRQLKQYEDAIADFDRLLALNYQPAAKIYLNRSMAYHMLGNKEKSLADLRQAKALDP 420
            C  AI    L+   L     NRG    A  + + A+ED+D  L L P    A+  RG A  +L+Q++ A+ D+D     +      ++ NR+M +  +G  E + ADL +A  L P
Sbjct:   57 CTRAINDESLTTRDLAATYSNRGIIQAARGRFELAIEDYDRSLALNPTLVHAMINRGNARTRLRQFKQALDDYDLAGFYSEGRNGLVFYNRAMLFMQMGRIENARADLLRALELQP 172          
BLAST of mRNA_P-wetherbeei_contig6593.3.1 vs. uniprot
Match: A0A7K1SEV1_9BACT (Tetratricopeptide repeat protein n=1 Tax=Spirosoma arboris TaxID=2682092 RepID=A0A7K1SEV1_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.870e-6
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  169 DKALEDFDAILKLAPDDKKALFTRGIAHRQLKQYEDAIADFDRLLALNYQPAAKIYLNRSMAYHMLGNKEKSLAD 393
            D AL + +A+LK+ P  K+A  +RGIA    KQY+ AIADFDR LAL+   A  I     +AYH  G  +K+L D
Sbjct:  154 DDALVELNALLKINPQHKEAYLSRGIAFLFKKQYQSAIADFDRALALD---AGYI-----VAYHNRGKAKKALGD 220          
BLAST of mRNA_P-wetherbeei_contig6593.3.1 vs. uniprot
Match: A0A2G4FUV8_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2G4FUV8_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 3.520e-6
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 1
Query:  148 ALASEKPDKALEDFDAILKLAPDDKKALFTRGIAHRQLKQYEDAIADFDRLLALNYQPAAKIYLNRSMAYHMLGNKEKSLADLRQAKALDPKDPVI 435
            ALA+ +   A+   D+ L + P D   L  RG AHR+L Q++ A+AD+   LA++ + AA  Y  R++    LGN   + AD+  A+AL   DP +
Sbjct:   45 ALATSQWRDAVRLLDSALTVTPRDATRLQQRGRAHRELAQFDKALADYTLALAVDRRFAAA-YGGRAIVQQRLGNINAAFADVDSARALGMNDPQL 139          
BLAST of mRNA_P-wetherbeei_contig6593.3.1 vs. uniprot
Match: A0A1V5M483_9BACT (Photosystem I assembly protein Ycf3 n=1 Tax=bacterium ADurb.Bin429 TaxID=1866930 RepID=A0A1V5M483_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 8.310e-6
Identity = 35/110 (31.82%), Postives = 55/110 (50.00%), Query Frame = 1
Query:  130 FNRGQTALASEKPDKALEDFDAILKLAPDDKKALFTRGIAHRQLKQYEDAIADFDRLLAL----NYQPAAKIYLNRSMAYHMLGNKEKSLADLRQAKALDPKDPVITDRL 447
            + +G +   + +  +++  F     L P D   L  RGIA+R+LK Y+ A+ DFD  L L    +      IY  R+ AYH +G   K+++D  +A  LDP D    + L
Sbjct:   35 YRQGMSHAKAGRHRQSVGAFSRAHILRPTDPWVLTGRGIANRELKNYDLALRDFDAALRLLKGRHDTRVTAIYCARADAYHQMGRYAKAISDYARAVKLDPTDARACNNL 144          
BLAST of mRNA_P-wetherbeei_contig6593.3.1 vs. uniprot
Match: A0A0W8G2S6_9ZZZZ (Uncharacterized protein n=1 Tax=hydrocarbon metagenome TaxID=938273 RepID=A0A0W8G2S6_9ZZZZ)

HSP 1 Score: 52.8 bits (125), Expect = 8.810e-6
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  121 VALFNRGQTALASEKPDKALEDFDAILKLAPDDKKALFTRGIAHRQLKQYEDAIADFDRLLALNYQPAAKIYLNRSMAYHMLGNKEKSLADLRQAKALDPKDPV 432
            +A  ++G    A+E   K L   + I K+      A   R + + Q+ QY+ A+ADF++ LA++ Q A +I  NR+  Y  +GN EK+ AD + AK +D K  V
Sbjct:   34 LAAIDQGNFPKATEFLTKILSASEGIDKMNL--MSAYNVRALCYSQMDQYDKALADFEKALAIDPQNA-EILGNRAFVYQAMGNLEKAKADAKAAKRIDYKVKV 134          
BLAST of mRNA_P-wetherbeei_contig6593.3.1 vs. uniprot
Match: UPI0016717ED1 (tetratricopeptide repeat protein n=1 Tax=Lentzea flava TaxID=103732 RepID=UPI0016717ED1)

HSP 1 Score: 54.7 bits (130), Expect = 1.220e-5
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  121 VALFNRGQTALASEKPDKALEDFDAILKLAPDDKKALFTRGIAHRQLKQYEDAIADFDRLLALNYQPAAKIYLNRSMAYHMLGNKEKSLADLRQAKALD 417
            +AL NRG     +     AL D +A L+L PD+     TR   H  L+ +E+A+AD DR++A+   P  KI   R+MA    G  ++++A   +A +LD
Sbjct:  867 LALANRGLARTETGDRTGALGDVNAALELFPDNLIVRRTRAHLHLDLEMFEEALADIDRVMAVESDPEIKIM--RAMALDGTGATDEAIAGFTEALSLD 963          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6593.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A3C0TT33_9PROT1.920e-6866.67Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A351T1C2_9PROT4.170e-3645.03Uncharacterized protein n=6 Tax=Alphaproteobacteri... [more]
UPI0004632EC93.480e-932.58tetratricopeptide repeat protein n=1 Tax=Bradyrhiz... [more]
A0A3B0RVV1_9ZZZZ5.100e-729.73TPR domain protein n=1 Tax=hydrothermal vent metag... [more]
A0A6P2BJE7_9GAMM7.020e-731.03Tetratricopeptide repeat protein n=1 Tax=Gammaprot... [more]
A0A7K1SEV1_9BACT1.870e-646.67Tetratricopeptide repeat protein n=1 Tax=Spirosoma... [more]
A0A2G4FUV8_9BACT3.520e-636.46Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A1V5M483_9BACT8.310e-631.82Photosystem I assembly protein Ycf3 n=1 Tax=bacter... [more]
A0A0W8G2S6_9ZZZZ8.810e-634.62Uncharacterized protein n=1 Tax=hydrocarbon metage... [more]
UPI0016717ED11.220e-535.35tetratricopeptide repeat protein n=1 Tax=Lentzea f... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6593contigP-wetherbeei_contig6593:1699..2184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1040989.AWZU01000033_gene3548
PFAMsTPR_1,TPR_11,TPR_2,TPR_8
Model size486
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.7e-10
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1NG0U@1224|Proteobacteria,2U0YA@28211|Alphaproteobacteria,3K5Y0@41294|Bradyrhizobiaceae
DescriptionTetratricopeptide repeat
Cds size486
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186924.182567-CDS-P-wetherbeei_contig6593:1698..21841683186924.182567-CDS-P-wetherbeei_contig6593:1698..2184Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6593 1699..2184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6593.3.1prot_P-wetherbeei_contig6593.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6593 1699..2184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6593.3.1

>prot_P-wetherbeei_contig6593.3.1 ID=prot_P-wetherbeei_contig6593.3.1|Name=mRNA_P-wetherbeei_contig6593.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
AFAGEAEFELCQGTSENAVIRAANCDIAIRMGGLSDEQLIVALFNRGQTA
LASEKPDKALEDFDAILKLAPDDKKALFTRGIAHRQLKQYEDAIADFDRL
LALNYQPAAKIYLNRSMAYHMLGNKEKSLADLRQAKALDPKDPVITDRLW
KTERLYKQQGG*
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mRNA from alignment at P-wetherbeei_contig6593:1699..2184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6593.3.1 ID=mRNA_P-wetherbeei_contig6593.3.1|Name=mRNA_P-wetherbeei_contig6593.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig6593:1699..2184+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTTCGCAGGCGAGGCCGAATTTGAATTATGTCAGGGAACATCGGAAAA TGCCGTCATCCGGGCCGCCAATTGCGACATTGCCATCCGCATGGGCGGTC TTTCAGATGAACAGCTGATTGTCGCCCTGTTTAACCGGGGCCAGACTGCC CTGGCCTCAGAAAAACCGGATAAGGCGCTGGAAGATTTTGACGCGATCCT GAAACTGGCCCCGGATGATAAGAAAGCGCTGTTTACCCGAGGCATTGCGC ATCGGCAGTTAAAACAATATGAAGATGCCATTGCGGATTTTGACCGTCTT CTGGCACTGAACTATCAACCGGCGGCGAAAATCTACCTGAACCGCAGCAT GGCCTATCACATGCTTGGGAATAAGGAAAAGTCCCTGGCCGACCTGCGCC AGGCCAAAGCCCTGGATCCCAAAGACCCGGTTATCACTGATCGCCTGTGG AAGACCGAGCGTCTGTACAAGCAACAGGGCGGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6593:1699..2184+

>mRNA_P-wetherbeei_contig6593.3.1 ID=mRNA_P-wetherbeei_contig6593.3.1|Name=mRNA_P-wetherbeei_contig6593.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig6593:1699..2184+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTTCGCAGGCGAGGCCGAATTTGAATTATGTCAGGGAACATCGGAAAA
TGCCGTCATCCGGGCCGCCAATTGCGACATTGCCATCCGCATGGGCGGTC
TTTCAGATGAACAGCTGATTGTCGCCCTGTTTAACCGGGGCCAGACTGCC
CTGGCCTCAGAAAAACCGGATAAGGCGCTGGAAGATTTTGACGCGATCCT
GAAACTGGCCCCGGATGATAAGAAAGCGCTGTTTACCCGAGGCATTGCGC
ATCGGCAGTTAAAACAATATGAAGATGCCATTGCGGATTTTGACCGTCTT
CTGGCACTGAACTATCAACCGGCGGCGAAAATCTACCTGAACCGCAGCAT
GGCCTATCACATGCTTGGGAATAAGGAAAAGTCCCTGGCCGACCTGCGCC
AGGCCAAAGCCCTGGATCCCAAAGACCCGGTTATCACTGATCGCCTGTGG
AAGACCGAGCGTCTGTACAAGCAACAGGGCGGATAA
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