mRNA_P-wetherbeei_contig6591.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6591.2.1
Unique NamemRNA_P-wetherbeei_contig6591.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6591.2.1 vs. uniprot
Match: A0A5D6Y7K6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7K6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.030e-16
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 SLDATMIQVRELWQSMQLDLVAYQGRVRLIRGWDALFAKLEEHLSSLASMKQSPYFK 171
            +LD  + QV + W + QLDLV YQ R RLIRGWD +FAKLEEHL+SL+SMKQSPY++
Sbjct: 1249 ALDEFLRQVTDFWANYQLDLVNYQNRCRLIRGWDEMFAKLEEHLNSLSSMKQSPYYR 1305
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BLAST of mRNA_P-wetherbeei_contig6591.2.1 vs. uniprot
Match: A0A835Z350_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z350_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.030e-16
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 SLDATMIQVRELWQSMQLDLVAYQGRVRLIRGWDALFAKLEEHLSSLASMKQSPYFK 171
            +L+  + QVR+ W +  LDLV+YQGRVRLIRGWD +FA L+EHL+ LA+MKQSPYF+
Sbjct: 1392 ALEEYLRQVRDAWGAFSLDLVSYQGRVRLIRGWDTMFALLDEHLTGLANMKQSPYFR 1448
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BLAST of mRNA_P-wetherbeei_contig6591.2.1 vs. uniprot
Match: D8M500_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M500_BLAHO)

HSP 1 Score: 80.1 bits (196), Expect = 3.780e-16
Identity = 33/50 (66.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   22 QVRELWQSMQLDLVAYQGRVRLIRGWDALFAKLEEHLSSLASMKQSPYFK 171
            Q+RE W + QL+LV+YQGR +LIRGW+ALF KL+EH+S+L+SMKQSPY++
Sbjct: 1244 QIREFWNAYQLELVSYQGRCKLIRGWEALFQKLDEHISALSSMKQSPYYR 1293
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BLAST of mRNA_P-wetherbeei_contig6591.2.1 vs. uniprot
Match: A0A0N4V630_ENTVE (Uncharacterized protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4V630_ENTVE)

HSP 1 Score: 79.0 bits (193), Expect = 9.640e-16
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 SLDATMIQVRELWQSMQLDLVAYQGRVRLIRGWDALFAKLEEHLSSLASMKQSPYFK 171
            +L+  + QVRE WQS ++DLV YQG+ RLIRGWD LF KL+EH++SL +MK SPY+K
Sbjct: 1451 ALEEFLKQVREYWQSFEIDLVNYQGKTRLIRGWDELFNKLKEHMNSLTAMKLSPYYK 1507
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BLAST of mRNA_P-wetherbeei_contig6591.2.1 vs. uniprot
Match: A0A8K1CJP7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJP7_PYTOL)

HSP 1 Score: 79.0 bits (193), Expect = 9.640e-16
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 SLDATMIQVRELWQSMQLDLVAYQGRVRLIRGWDALFAKLEEHLSSLASMKQSPYFK 171
            +LD  + Q  + W S +LDLV YQ R R+IRGWD +FAKLEEHL+SLASMKQSPY++
Sbjct: 1468 ALDEFLRQTSDYWTSYRLDLVNYQNRCRIIRGWDEMFAKLEEHLNSLASMKQSPYYR 1524
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BLAST of mRNA_P-wetherbeei_contig6591.2.1 vs. uniprot
Match: K3WUC5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUC5_GLOUD)

HSP 1 Score: 79.0 bits (193), Expect = 9.640e-16
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 SLDATMIQVRELWQSMQLDLVAYQGRVRLIRGWDALFAKLEEHLSSLASMKQSPYFK 171
            +LD  + QV + W + QLDLV YQ R R+IRGWD +FAKLEEHL+SL+SMKQSPY++
Sbjct: 1563 ALDEFLRQVVDYWTNYQLDLVNYQNRCRIIRGWDEMFAKLEEHLNSLSSMKQSPYYR 1619
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BLAST of mRNA_P-wetherbeei_contig6591.2.1 vs. uniprot
Match: A0A2D4BM60_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BM60_PYTIN)

HSP 1 Score: 78.2 bits (191), Expect = 1.800e-15
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 SLDATMIQVRELWQSMQLDLVAYQGRVRLIRGWDALFAKLEEHLSSLASMKQSPYFK 171
            +LD  + QV + W + +LDLV YQ R R++RGWD +FAKLEEHL+SL SMKQSPY++
Sbjct: 1502 ALDEFLRQVTDYWSAFRLDLVNYQNRCRIVRGWDEMFAKLEEHLNSLGSMKQSPYYR 1558
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BLAST of mRNA_P-wetherbeei_contig6591.2.1 vs. uniprot
Match: D0MWJ6_PHYIT (Dynein heavy chain n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0MWJ6_PHYIT)

HSP 1 Score: 78.2 bits (191), Expect = 1.800e-15
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 SLDATMIQVRELWQSMQLDLVAYQGRVRLIRGWDALFAKLEEHLSSLASMKQSPYFK 171
            +LD  + QV + W + QLDLV YQ R R+IRGWD +FAKL+EHL+SL+SMKQSPY++
Sbjct: 1486 ALDEFLRQVSDYWTNYQLDLVNYQNRCRVIRGWDEMFAKLDEHLNSLSSMKQSPYYR 1542
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BLAST of mRNA_P-wetherbeei_contig6591.2.1 vs. uniprot
Match: H3GM82_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM82_PHYRM)

HSP 1 Score: 78.2 bits (191), Expect = 1.800e-15
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 SLDATMIQVRELWQSMQLDLVAYQGRVRLIRGWDALFAKLEEHLSSLASMKQSPYFK 171
            +LD  + QV + W + QLDLV YQ R R+IRGWD +FAKL+EHL+SL+SMKQSPY++
Sbjct: 1490 ALDEFLRQVSDYWTNYQLDLVNYQNRCRVIRGWDEMFAKLDEHLNSLSSMKQSPYYR 1546
[Close]
BLAST of mRNA_P-wetherbeei_contig6591.2.1 vs. uniprot
Match: G4YQW0_PHYSP (Uncharacterized protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=G4YQW0_PHYSP)

HSP 1 Score: 78.2 bits (191), Expect = 1.800e-15
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 SLDATMIQVRELWQSMQLDLVAYQGRVRLIRGWDALFAKLEEHLSSLASMKQSPYFK 171
            +LD  + QV + W + QLDLV YQ R R+IRGWD +FAKL+EHL+SL+SMKQSPY++
Sbjct: 1491 ALDEFLRQVSDYWTNYQLDLVNYQNRCRVIRGWDEMFAKLDEHLNSLSSMKQSPYYR 1547
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6591.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6Y7K6_9STRA2.030e-1664.91Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A835Z350_9STRA2.030e-1663.16Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
D8M500_BLAHO3.780e-1666.00Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
A0A0N4V630_ENTVE9.640e-1661.40Uncharacterized protein n=1 Tax=Enterobius vermicu... [more]
A0A8K1CJP7_PYTOL9.640e-1663.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WUC5_GLOUD9.640e-1663.16Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BM60_PYTIN1.800e-1559.65Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
D0MWJ6_PHYIT1.800e-1561.40Dynein heavy chain n=16 Tax=Peronosporaceae TaxID=... [more]
H3GM82_PHYRM1.800e-1561.40Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
G4YQW0_PHYSP1.800e-1561.40Uncharacterized protein n=21 Tax=Peronosporaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6591contigP-wetherbeei_contig6591:3049..3222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000020059
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size174
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.73e-16
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota,1MCXV@121069|Pythiales
Descriptiondynein heavy chain. Source PGD
Cds size159
COG categoryZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186924.0186589-CDS-P-wetherbeei_contig6591:3048..32071683186924.0186589-CDS-P-wetherbeei_contig6591:3048..3207Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6591 3049..3207 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186924.029479-UTR-P-wetherbeei_contig6591:3207..32221683186924.029479-UTR-P-wetherbeei_contig6591:3207..3222Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6591 3208..3222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6591.2.1prot_P-wetherbeei_contig6591.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6591 3049..3207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6591.2.1

>prot_P-wetherbeei_contig6591.2.1 ID=prot_P-wetherbeei_contig6591.2.1|Name=mRNA_P-wetherbeei_contig6591.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
MIQVRELWQSMQLDLVAYQGRVRLIRGWDALFAKLEEHLSSLASMKQSPY
FK*
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mRNA from alignment at P-wetherbeei_contig6591:3049..3222-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6591.2.1 ID=mRNA_P-wetherbeei_contig6591.2.1|Name=mRNA_P-wetherbeei_contig6591.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig6591:3049..3222- (Phaeothamnion wetherbeei SAG_119_79)
TCCCTTGACGCAACCATGATACAGGTGCGGGAGCTGTGGCAATCGATGCA
GCTGGACCTAGTGGCTTACCAGGGACGCGTCCGTCTCATCCGTGGCTGGG
ACGCCCTCTTTGCCAAGCTCGAAGAGCACCTCAGCTCCCTCGCCTCCATG
AAGCAGAGCCCCTACTTCAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6591:3049..3222-

>mRNA_P-wetherbeei_contig6591.2.1 ID=mRNA_P-wetherbeei_contig6591.2.1|Name=mRNA_P-wetherbeei_contig6591.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig6591:3049..3222- (Phaeothamnion wetherbeei SAG_119_79)
ATGATACAGGTGCGGGAGCTGTGGCAATCGATGCAGCTGGACCTAGTGGC
TTACCAGGGACGCGTCCGTCTCATCCGTGGCTGGGACGCCCTCTTTGCCA
AGCTCGAAGAGCACCTCAGCTCCCTCGCCTCCATGAAGCAGAGCCCCTAC
TTCAAGTGA
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