mRNA_P-wetherbeei_contig6581.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6581.2.1
Unique NamemRNA_P-wetherbeei_contig6581.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6581.2.1 vs. uniprot
Match: A0A6H5JFE7_9PHAE (J domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE7_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.480e-19
Identity = 41/69 (59.42%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 SMGVEILRTVGYVYRNYGHRSLGKLARSSLQPRAIKGQWRYFLDRGHRLQNVLAATGSSAKLMLHLQTR 207
            SMG EILRTVGYVY+NY  RSLGKLA + LQP+A++G+ R++ D+ HR+ N+L+A  S+ +L +HLQTR
Sbjct:  403 SMGREILRTVGYVYKNYAQRSLGKLAPNVLQPQALRGRMRFYSDQAHRVNNMLSAVSSTTRLYVHLQTR 471
[Close]
BLAST of mRNA_P-wetherbeei_contig6581.2.1 vs. uniprot
Match: D8LDC1_ECTSI (DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC1_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 9.230e-19
Identity = 40/68 (58.82%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 SMGVEILRTVGYVYRNYGHRSLGKLARSSLQPRAIKGQWRYFLDRGHRLQNVLAATGSSAKLMLHLQT 204
            SMG EILRTVGYVY+NY  RSLGKLA + LQP+A++G+ R++ D+ HR+ N+L+A  S+ +L +HLQT
Sbjct:  320 SMGREILRTVGYVYKNYAQRSLGKLAPNVLQPQALRGRMRFYSDQAHRVNNMLSAVSSTTRLYVHLQT 387
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6581.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFE7_9PHAE2.480e-1959.42J domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
D8LDC1_ECTSI9.230e-1958.82DnaJ domain containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6581contigP-wetherbeei_contig6581:2858..3064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LDC1
PFAMsATG_C,DnaJ,DnaJ-X,PRESAN
Model size207
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002521,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0019538,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030097,GO:0030098,GO:0030154,GO:0030163,GO:0030183,GO:0030433,GO:0030968,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036498,GO:0036503,GO:0042113,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045321,GO:0046649,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051087,GO:0051603,GO:0051716,GO:0051787,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071704,GO:0080134,GO:0080135,GO:0098827,GO:1900101,GO:1900102,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903573,GO:1903894,GO:1903895,GO:1905897
Exons1
Evalue5.21e-19
EggNOG OGsCOG2214@1|root,KOG0691@2759|Eukaryota
Descriptiontoxin transport
Cds size204
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.4416275-CDS-P-wetherbeei_contig6581:2857..30611683186923.4416275-CDS-P-wetherbeei_contig6581:2857..3061Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6581 2858..3061 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.453188-UTR-P-wetherbeei_contig6581:3061..30641683186923.453188-UTR-P-wetherbeei_contig6581:3061..3064Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6581 3062..3064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6581.2.1prot_P-wetherbeei_contig6581.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6581 2858..3061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6581.2.1

>prot_P-wetherbeei_contig6581.2.1 ID=prot_P-wetherbeei_contig6581.2.1|Name=mRNA_P-wetherbeei_contig6581.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
MGVEILRTVGYVYRNYGHRSLGKLARSSLQPRAIKGQWRYFLDRGHRLQN
VLAATGSSAKLMLHLQTR
back to top

mRNA from alignment at P-wetherbeei_contig6581:2858..3064-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6581.2.1 ID=mRNA_P-wetherbeei_contig6581.2.1|Name=mRNA_P-wetherbeei_contig6581.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig6581:2858..3064- (Phaeothamnion wetherbeei SAG_119_79)
TCGATGGGCGTAGAGATCCTGCGGACGGTGGGCTACGTCTACCGCAACTA
CGGCCACCGCTCCCTCGGCAAGCTGGCGCGATCGTCGCTGCAGCCGCGGG
CCATCAAGGGCCAGTGGCGCTACTTTCTGGACCGGGGCCATCGCCTGCAG
AACGTGCTGGCGGCCACAGGGAGCAGCGCCAAGCTCATGCTGCACCTCCA
GACCAGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6581:2858..3064-

>mRNA_P-wetherbeei_contig6581.2.1 ID=mRNA_P-wetherbeei_contig6581.2.1|Name=mRNA_P-wetherbeei_contig6581.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig6581:2858..3064- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGTAGAGATCCTGCGGACGGTGGGCTACGTCTACCGCAACTACGG
CCACCGCTCCCTCGGCAAGCTGGCGCGATCGTCGCTGCAGCCGCGGGCCA
TCAAGGGCCAGTGGCGCTACTTTCTGGACCGGGGCCATCGCCTGCAGAAC
GTGCTGGCGGCCACAGGGAGCAGCGCCAAGCTCATGCTGCACCTCCAGAC
CAGG
back to top