mRNA_P-wetherbeei_contig6577.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6577.1.1
Unique NamemRNA_P-wetherbeei_contig6577.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6577.1.1 vs. uniprot
Match: D8LEJ5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ5_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.550e-25
Identity = 67/138 (48.55%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    1 AEQQILQLARVQAQRDEEANRLRGEISRLHEQLEAAARETSSRDDGVAKLKQKIAGLEADLARGAEL-HGVHSTERLQYLKNIVKRAMTCEGRERERLVPVLAAVLHFSDDEAAEVRRAVAAGASGSGTAAGGWASYF 411
            AEQQILQ+ARVQAQRDEE  RLR  I RL +++ A   E ++RDD   +L++++  L+ + AR  EL       E++ YLKN+VKR +  +G ER+RLVPV+A +L FS  E +EV +AVAA A+G  T+   W S F
Sbjct: 2722 AEQQILQMARVQAQRDEETGRLRVNIQRLADEIRAREEELAARDDEKEELRKRVEDLQGEAARAKELLDDATGPEKMTYLKNVVKRFVMSDGTERQRLVPVVATILSFSPAETSEVGKAVAAAAAGGATS---WGSVF 2856          
BLAST of mRNA_P-wetherbeei_contig6577.1.1 vs. uniprot
Match: A0A6H5K2N6_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N6_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.580e-23
Identity = 64/138 (46.38%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    1 AEQQILQLARVQAQRDEEANRLRGEISRLHEQLEAAARETSSRDDGVAKLKQKIAGLEADLARGAEL-HGVHSTERLQYLKNIVKRAMTCEGRERERLVPVLAAVLHFSDDEAAEVRRAVAAGASGSGTAAGGWASYF 411
            AEQQILQ+ARVQAQRDEE  RLR +I RL +++ A   E ++  +    L++++  L+ + AR  EL       E++ YLKN+VKR +  +G ER+RLVPV+A +L FS  E +EV +AVAA A+G  T+   W S F
Sbjct: 3064 AEQQILQMARVQAQRDEETGRLRVKIKRLADEIRAREEELAAXXEEKEGLRKRVEDLQGEAARAKELLDDATGPEKMTYLKNVVKRFVMSDGTERQRLVPVVATILSFSPAETSEVGKAVAAAAAGGATS---WGSVF 3198          
BLAST of mRNA_P-wetherbeei_contig6577.1.1 vs. uniprot
Match: A0A835ZGA7_9STRA (GRIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGA7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.220e-21
Identity = 57/122 (46.72%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 AEQQILQLARVQAQRDEEANRLRGEISRLHEQLEAAARETSSRDDGVAKLKQKIAGLEADLARGAELHGVHSTERLQYLKNIVKRAMTCEGRERERLVPVLAAVLHFSDDEAAEVRRAVAAG 366
            AEQQILQ AR QAQRDEE NRLRG +  L ++L+   +E ++R+  +   + ++  L+   AR  +L G  S ++L YLKN+V + + C+   RERLVPVLA +L  S+ EAA VR +VA+G
Sbjct: 2375 AEQQILQAARAQAQRDEEGNRLRGLVKELRDRLQTKDKEIAAREAALRIRESEVEDLKRSRAREGDLLGQDSADKLTYLKNVVLKFLVCDQHGRERLVPVLATILRLSELEAASVRASVASG 2496          
BLAST of mRNA_P-wetherbeei_contig6577.1.1 vs. uniprot
Match: A0A7S2R863_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R863_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.080e-9
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    4 EQQILQLARVQAQRDEEANRLRGEISRLHEQLEAAARETSSRDDGVAKLKQKIAGLE---ADLARGAE-----LHGVHSTERLQYLKNIVKRAMTC---EGRERERLVPVLAAVLHFSDDEAAEVRRAVA 360
            EQQIL  AR+QA RD  A +L+GE + L ++LE   +E + RD  +A  + K   L+   AD+ R +      L    +  +L+YLK+ V + M     + +++  L+ V+AA+LHFS+ E   V+ A+A
Sbjct:  254 EQQILSQARLQASRDALALQLKGENAALEKKLEGRGKELAERDRQLASFRSKTEALQKQVADMERDSRMKADLLEAADADHKLKYLKSAVLQFMLANPEDDKQKAALMRVVAAILHFSEQEMESVQAAIA 383          
BLAST of mRNA_P-wetherbeei_contig6577.1.1 vs. uniprot
Match: A0A8K1CJQ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJQ9_PYTOL)

HSP 1 Score: 60.5 bits (145), Expect = 1.070e-7
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 1
Query:    1 AEQQILQLARVQAQRDEEANRLRGEISRLHEQLEAAARETSSRDDGVAKLKQKIAGLEADLARGAELHGVHSTE----RLQYLKNIVKRAMTCEGR-ERERLVPVLAAVLHFSDDEAAEVRRAVAAGASGSGTAAGGWASYFLPAATAVTAGPAGAAPPP 465
            A+ QIL+LAR QA RDEEA +++ ++S L EQ+    +          K +  +A LE    +   L  ++S       L+YLKN+V + +  +   E+ERL+PV+A VLHFS  E  ++  +       SG   GG  S F         G A +APPP
Sbjct: 2256 ADAQILKLARAQALRDEEAGKMKKQLSALDEQVRLFQK----------KYEDTLALLEETNRQKKRLQELNSRSSDGLNLEYLKNVVIKYIESQNHSEKERLIPVIATVLHFSPQEMRKINDSHQRAQEESGGLLGGMFSLF---------GAATSAPPP 2396          
BLAST of mRNA_P-wetherbeei_contig6577.1.1 vs. uniprot
Match: A0A834U300_9FABA (Protein GRIP n=1 Tax=Senna tora TaxID=362788 RepID=A0A834U300_9FABA)

HSP 1 Score: 60.1 bits (144), Expect = 1.340e-7
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    1 AEQQILQLARVQAQRDEEANRLRGEISRLHEQLEAAARETSSRDDGVAKLKQKIAGLEADLARGAELHGVHSTERLQYLKNIVKRAMTCEGRERERLVPVLAAVLHFSDDEAAEVRRA 354
            AEQQIL LAR QAQR+EE  R +  I  L E++E   RE    +   A LK ++  +E    R  +  GV  T    YLKN++ + +  E  E E L+PV+A +L FS DE  + ++A
Sbjct:  656 AEQQILLLARQQAQREEELARSQRHILALQEEIEELERENRLHNQQEAMLKAELRNME----RTKKREGVDMT----YLKNVILKLL--ETGEVEALLPVIAMLLQFSPDEMQKCQQA 763          
BLAST of mRNA_P-wetherbeei_contig6577.1.1 vs. uniprot
Match: V4SI69_CITCL (GRIP domain-containing protein n=8 Tax=Citrus TaxID=2706 RepID=V4SI69_CITCL)

HSP 1 Score: 60.1 bits (144), Expect = 1.340e-7
Identity = 47/118 (39.83%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 AEQQILQLARVQAQRDEEANRLRGEISRLHEQLEAAARETSSRDDGVAKLKQKIAGLEADLARGAELHGVHSTERLQYLKNIVKRAMTCEGRERERLVPVLAAVLHFSDDEAAEVRRA 354
            AEQQIL LAR QAQR+EE  + +  I  L E+LE   RE        A LK++   +E    R  +  GV  T    YLKN++ + +  E  E E L+PV+A +L FS +E  + +RA
Sbjct:  656 AEQQILLLARQQAQREEELAQSQRHILALQEELEELERENRLHSQQEAMLKEEFRNME----RSKKREGVDMT----YLKNVILKLL--ETGEVEALLPVIAMLLQFSPEEMQKCQRA 763          
BLAST of mRNA_P-wetherbeei_contig6577.1.1 vs. uniprot
Match: UPI00053F426E (protein GRIP isoform X1 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F426E)

HSP 1 Score: 59.3 bits (142), Expect = 2.480e-7
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    1 AEQQILQLARVQAQRDEEANRLRGEISRLHEQLEAAARETSSRDDGVAKLKQKIAGLEADLARGAELHGVHSTERLQYLKNIVKRAMTCEGRERERLVPVLAAVLHFSDDE 333
            AEQQIL LAR QAQR+EE  + +  I  L E++E   RE    +  V  LK+++  ++    R  +  GV  T    YLKN+V + +  E  E E L+PV+A +L FS DE
Sbjct:  661 AEQQILMLARQQAQREEELAQSQRHILALQEEIEELERENRLHNQQVGMLKEELRIMD----RSQKREGVDMT----YLKNVVLKLL--ETGEVEALLPVIAMLLQFSPDE 761          
BLAST of mRNA_P-wetherbeei_contig6577.1.1 vs. uniprot
Match: A0A6A6MHS3_HEVBR (GRIP domain-containing protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MHS3_HEVBR)

HSP 1 Score: 58.5 bits (140), Expect = 4.250e-7
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    1 AEQQILQLARVQAQRDEEANRLRGEISRLHEQLEAAARETSSRDDGVAKLKQKIAGLEADLARGAELHGVHSTERLQYLKNIVKRAMTCEGRERERLVPVLAAVLHFSDDEAAEVRRA 354
            AEQQIL LAR QAQR+EE  + +  I  L E++E   RE   R    A LK ++  +E    R  +  GV  T    YLKN++ + +  E  E E L+PV+A +L FS +E  + ++A
Sbjct:  373 AEQQILLLARQQAQREEELAQSQRHILALQEEIEELERENRLRSQQEAMLKAELRNVE----RTQKREGVDMT----YLKNVILKLL--ETGEVEALLPVIAMLLQFSPEEVLKCQQA 480          
BLAST of mRNA_P-wetherbeei_contig6577.1.1 vs. uniprot
Match: UPI000B78830A (protein GRIP n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B78830A)

HSP 1 Score: 58.5 bits (140), Expect = 4.590e-7
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    1 AEQQILQLARVQAQRDEEANRLRGEISRLHEQLEAAARETSSRDDGVAKLKQKIAGLEADLARGAELHGVHSTERLQYLKNIVKRAMTCEGRERERLVPVLAAVLHFSDDEAAEVRRA 354
            AEQQIL LAR QAQR+EE  + +  I  L E++E   RE   R    A LK ++  +E    R  +  GV  T    YLKN++ + +  E  E E L+PV+A +L FS +E  + ++A
Sbjct:  663 AEQQILLLARQQAQREEELAQSQRHILALQEEIEELERENRLRSQQEAMLKAELRNVE----RTQKREGVDMT----YLKNVILKLL--ETGEVEALLPVIAMLLQFSPEEVLKCQQA 770          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6577.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ5_ECTSI1.550e-2548.55GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2N6_9PHAE5.580e-2346.38GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZGA7_9STRA1.220e-2146.72GRIP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2R863_9STRA4.080e-935.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8K1CJQ9_PYTOL1.070e-734.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A834U300_9FABA1.340e-739.83Protein GRIP n=1 Tax=Senna tora TaxID=362788 RepID... [more]
V4SI69_CITCL1.340e-739.83GRIP domain-containing protein n=8 Tax=Citrus TaxI... [more]
UPI00053F426E2.480e-740.54protein GRIP isoform X1 n=2 Tax=Beta vulgaris subs... [more]
A0A6A6MHS3_HEVBR4.250e-738.98GRIP domain-containing protein n=1 Tax=Hevea brasi... [more]
UPI000B78830A4.590e-738.98protein GRIP n=1 Tax=Hevea brasiliensis TaxID=3981... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6577contigP-wetherbeei_contig6577:201..670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008614101.1
PFAMsGRIP
Model size470
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.38e-08
EggNOG OGs2C4TI@1|root,2SDET@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_004410.1
DescriptionGRIP domain
Cds size468
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.1813276-CDS-P-wetherbeei_contig6577:200..6681683186923.1813276-CDS-P-wetherbeei_contig6577:200..668Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6577 201..668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6577.1.1prot_P-wetherbeei_contig6577.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6577 201..668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6577.1.1

>prot_P-wetherbeei_contig6577.1.1 ID=prot_P-wetherbeei_contig6577.1.1|Name=mRNA_P-wetherbeei_contig6577.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
AEQQILQLARVQAQRDEEANRLRGEISRLHEQLEAAARETSSRDDGVAKL
KQKIAGLEADLARGAELHGVHSTERLQYLKNIVKRAMTCEGRERERLVPV
LAAVLHFSDDEAAEVRRAVAAGASGSGTAAGGWASYFLPAATAVTAGPAG
AAPPPS
back to top

mRNA from alignment at P-wetherbeei_contig6577:201..670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6577.1.1 ID=mRNA_P-wetherbeei_contig6577.1.1|Name=mRNA_P-wetherbeei_contig6577.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=470bp|location=Sequence derived from alignment at P-wetherbeei_contig6577:201..670+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGAACAGCAGATCCTGCAGCTGGCGCGCGTCCAGGCACAGCGCGACGA GGAGGCCAATCGCCTCCGCGGCGAGATTTCGCGGCTGCATGAGCAGCTCG AGGCGGCGGCACGGGAGACGTCATCGCGAGACGACGGCGTGGCGAAGCTG AAGCAGAAGATCGCCGGCCTCGAGGCGGACCTGGCGCGCGGCGCGGAGCT GCACGGCGTCCACAGCACGGAGCGGCTGCAGTATCTCAAAAACATTGTGA AGCGGGCCATGACGTGCGAGGGCAGGGAACGGGAGCGGCTGGTGCCGGTG CTCGCCGCCGTGCTCCACTTCAGCGACGATGAGGCCGCCGAAGTGCGCCG GGCCGTGGCAGCCGGCGCGAGTGGCAGCGGCACCGCTGCCGGCGGGTGGG CGTCGTACTTCTTGCCGGCGGCGACGGCGGTCACGGCGGGGCCGGCGGGG GCGGCGCCGCCGCCATCGCA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6577:201..670+

>mRNA_P-wetherbeei_contig6577.1.1 ID=mRNA_P-wetherbeei_contig6577.1.1|Name=mRNA_P-wetherbeei_contig6577.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig6577:201..670+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGAACAGCAGATCCTGCAGCTGGCGCGCGTCCAGGCACAGCGCGACGA
GGAGGCCAATCGCCTCCGCGGCGAGATTTCGCGGCTGCATGAGCAGCTCG
AGGCGGCGGCACGGGAGACGTCATCGCGAGACGACGGCGTGGCGAAGCTG
AAGCAGAAGATCGCCGGCCTCGAGGCGGACCTGGCGCGCGGCGCGGAGCT
GCACGGCGTCCACAGCACGGAGCGGCTGCAGTATCTCAAAAACATTGTGA
AGCGGGCCATGACGTGCGAGGGCAGGGAACGGGAGCGGCTGGTGCCGGTG
CTCGCCGCCGTGCTCCACTTCAGCGACGATGAGGCCGCCGAAGTGCGCCG
GGCCGTGGCAGCCGGCGCGAGTGGCAGCGGCACCGCTGCCGGCGGGTGGG
CGTCGTACTTCTTGCCGGCGGCGACGGCGGTCACGGCGGGGCCGGCGGGG
GCGGCGCCGCCGCCATCG
back to top