mRNA_P-wetherbeei_contig657.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig657.2.1
Unique NamemRNA_P-wetherbeei_contig657.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig657.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig657contigP-wetherbeei_contig657:3734..4469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size310
Hectar predicted targeting categorymitochondrion
Exons3
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.0044253-CDS-P-wetherbeei_contig657:3733..37851683186923.0044253-CDS-P-wetherbeei_contig657:3733..3785Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig657 3734..3785 -
1683186923.015615-CDS-P-wetherbeei_contig657:3968..40561683186923.015615-CDS-P-wetherbeei_contig657:3968..4056Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig657 3969..4056 -
1683186923.0247834-CDS-P-wetherbeei_contig657:4300..44691683186923.0247834-CDS-P-wetherbeei_contig657:4300..4469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig657 4301..4469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig657.2.1prot_P-wetherbeei_contig657.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig657 3734..4469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig657.2.1

>prot_P-wetherbeei_contig657.2.1 ID=prot_P-wetherbeei_contig657.2.1|Name=mRNA_P-wetherbeei_contig657.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
AHALLSNLRVKFRGQGQRPQRLRRAAVQLDQQQQRQGQIRRQRGRAGRAA
VLREGHRSTGKLPVRNVWRFHRLRRQCRLQRFHRFRPILLRLIVRLHKLG
KVL
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mRNA from alignment at P-wetherbeei_contig657:3734..4469-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig657.2.1 ID=mRNA_P-wetherbeei_contig657.2.1|Name=mRNA_P-wetherbeei_contig657.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=736bp|location=Sequence derived from alignment at P-wetherbeei_contig657:3734..4469- (Phaeothamnion wetherbeei SAG_119_79)
GCACACGCTCTACTTTCCAACCTTCGAGTCAAATTCCGTGGACAAGGGCA
ACGGCCCCAACGTCTACGCCGGGCAGCCGTACAGCTCGATCAGCAGCAGC
AGCGGCAGGGACAAATACGCCGGCAACGAGGTCGTGCTGGTCGAGCCGCA
GTTTTACGAGAGGGGCACCGTGAGTCATTCTGTCGTAGGATTTGAAGGTT
CATAGGGAAAAAAATGCCGTGGTGAGGCCCGGAGCGCGGAAACAGAAGCG
GACCAGATAAGCATGCCGCGTTCGTGACTAAACCTCTTTCAGTTTCGTGC
TTCTCCATGACTTCTTCTCACCTCTTTTCTGCTGTCCTACCATCGCCCTG
AATACCCGAGCCCTTCCTTTGCCCTCACTCCGAACGTCGATGGGGCCGTG
CTGGTTCTCTCAGGAAGCACTGGGAAACTACCTGTACGCAACGTGTGGCG
GTTTCACCGTCTACGGAGGCAATGTCGCTTACAGCGATTCCATCGATTTC
GGTATGGAGCTTGCCCAGGGTTTGCGCCTCTTGGAAGCTGATGTTTCAGA
GTTTTACGGAGGCCATGTTTATACAGGCAGGATGCTATATTCTTTTGTTT
GTCTTCCTTTCTCGTCTTCTGGTCGATCCACGCCCCTTCCCGTCGCGGCA
CTGCCTCCCTTCCTTGTCCGCCCCCTGCCGCCAGTCCAATTCTACTACGA
CTCATCGTGCGCCTACATAAGCTGGGCAAAGTACTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig657:3734..4469-

>mRNA_P-wetherbeei_contig657.2.1 ID=mRNA_P-wetherbeei_contig657.2.1|Name=mRNA_P-wetherbeei_contig657.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig657:3734..4469- (Phaeothamnion wetherbeei SAG_119_79)
GCACACGCTCTACTTTCCAACCTTCGAGTCAAATTCCGTGGACAAGGGCA
ACGGCCCCAACGTCTACGCCGGGCAGCCGTACAGCTCGATCAGCAGCAGC
AGCGGCAGGGACAAATACGCCGGCAACGAGGTCGTGCTGGTCGAGCCGCA
GTTTTACGAGAGGGGCACCGAAGCACTGGGAAACTACCTGTACGCAACGT
GTGGCGGTTTCACCGTCTACGGAGGCAATGTCGCTTACAGCGATTCCATC
GATTTCGTCCAATTCTACTACGACTCATCGTGCGCCTACATAAGCTGGGC
AAAGTACTG
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