mRNA_P-wetherbeei_contig657.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig657.1.1
Unique NamemRNA_P-wetherbeei_contig657.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig657.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig657contigP-wetherbeei_contig657:1476..2515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009035712.1
Model size280
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.83e-06
EggNOG OGs2BX5V@1|root,2S2EN@2759|Eukaryota
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.0589843-CDS-P-wetherbeei_contig657:1475..15451683186923.0589843-CDS-P-wetherbeei_contig657:1475..1545Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig657 1476..1545 -
1683186923.07398-CDS-P-wetherbeei_contig657:1768..18901683186923.07398-CDS-P-wetherbeei_contig657:1768..1890Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig657 1769..1890 -
1683186923.083471-CDS-P-wetherbeei_contig657:2160..22141683186923.083471-CDS-P-wetherbeei_contig657:2160..2214Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig657 2161..2214 -
1683186923.0961726-CDS-P-wetherbeei_contig657:2482..25151683186923.0961726-CDS-P-wetherbeei_contig657:2482..2515Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig657 2483..2515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig657.1.1prot_P-wetherbeei_contig657.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig657 1476..2515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig657.1.1

>prot_P-wetherbeei_contig657.1.1 ID=prot_P-wetherbeei_contig657.1.1|Name=mRNA_P-wetherbeei_contig657.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
GRSGSASASLTWTAQPLPSIAMDGGTSQTWYRGDVIWLFARSKPSSCGNA
TSALTYVWTETQQLLTFTSTSLDPRYLALPAYTLASGDWYTFE
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mRNA from alignment at P-wetherbeei_contig657:1476..2515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig657.1.1 ID=mRNA_P-wetherbeei_contig657.1.1|Name=mRNA_P-wetherbeei_contig657.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1040bp|location=Sequence derived from alignment at P-wetherbeei_contig657:1476..2515- (Phaeothamnion wetherbeei SAG_119_79)
GGGCGGAGCGGCAGCGCATCGGCGTCGCTTACGGTGAAAAGGGCCCTCCC
GAGCCGTATTTTTCGTTTGTGCGCTAGGTACACTGTCTTTCCTGTTCCAC
CTTTTCCTTCAGAGTGTGTTTATGCGGTTTGCATGTATGGTAAGCTGGCT
GAAGACGAACGTGCTAGCAAAGAGGGACGAGGCTTACCCGGTCAGAACGG
AGTGCTAGCGAAGAGGGACCGCTTCCCAAGCTTCACTCATCAGGTACTTC
CGCCGCCTTTGCTGCCTCCGCCTCCGCTGCCGCCAACCCGCCGCATTGCA
GTGGACGGCGCAGCCGCTGCCTTCGATTGCCATGGATGGTGGGACCAGCC
AGACGGTGAGAAGTGCTGGGGAACCGAGCTGTAGTGATGCTTTCTTGAAC
TCGAAAGTAATACCTTTGCTATTGTTTCTCGCTAGAGTACATAGATACGA
GCCACGGGACCGTTTTCGGCGACACTGCTCCTTCAGTGTGAGCCCTTCCC
ATGCCACCAATGGCAGTGGCCACCACTGCCGCCATTGCCAACACTGCAAC
CCCACGGCAAACCCCACCTCCTGCTTGCTTCTGGCCTATCTGCCCTCTAC
GTGCTCTCCGATCCACCTCACGCAGTGGTACCGCGGGGACGTGATCTGGC
TATTCGCACGGTCAAAGCCCAGCAGCTGCGGCAACGCAACTTCAGCCCTC
ACCTACGTCTGGACGGAGACGCAGCAGCTGCTCACCTTCACCAGCACGTG
AGCGAATGAGATGTAGTCAGTTGAGAGTTGTTCGTTTCGGCCAACCACAA
AACCCTAAATGCTACTTTCATCAGTGTCAGAGAAGGAAACCCCACAACGT
TATTTCCCATTGGCGTGAGAGAAAATCCAGATCGACTTCTTCCACCCTAT
CCCCATACTTTGTCGTTCTCTAATGACATCCCGCTTCTCTGCTATGGACG
TCCTGAATACCACAATACAGGTCGCTGGATCCCCGTTACCTGGCACTGCC
GGCCTACACGCTTGCGTCGGGAGACTGGTACACGTTTGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig657:1476..2515-

>mRNA_P-wetherbeei_contig657.1.1 ID=mRNA_P-wetherbeei_contig657.1.1|Name=mRNA_P-wetherbeei_contig657.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig657:1476..2515- (Phaeothamnion wetherbeei SAG_119_79)
GGGCGGAGCGGCAGCGCATCGGCGTCGCTTACGTGGACGGCGCAGCCGCT
GCCTTCGATTGCCATGGATGGTGGGACCAGCCAGACGTGGTACCGCGGGG
ACGTGATCTGGCTATTCGCACGGTCAAAGCCCAGCAGCTGCGGCAACGCA
ACTTCAGCCCTCACCTACGTCTGGACGGAGACGCAGCAGCTGCTCACCTT
CACCAGCACGTCGCTGGATCCCCGTTACCTGGCACTGCCGGCCTACACGC
TTGCGTCGGGAGACTGGTACACGTTTGAG
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