mRNA_P-wetherbeei_contig6565.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6565.2.1
Unique NamemRNA_P-wetherbeei_contig6565.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6565.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6565contigP-wetherbeei_contig6565:538..3219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1836
Hectar predicted targeting categoryother localisation
Exons5
Cds size1386
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6565.2.1prot_P-wetherbeei_contig6565.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6565 986..3217 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186922.583577-UTR-P-wetherbeei_contig6565:537..9851683186922.583577-UTR-P-wetherbeei_contig6565:537..985Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6565 538..985 -
1683186922.6442714-UTR-P-wetherbeei_contig6565:3217..32191683186922.6442714-UTR-P-wetherbeei_contig6565:3217..3219Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6565 3218..3219 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186922.597794-CDS-P-wetherbeei_contig6565:985..16451683186922.597794-CDS-P-wetherbeei_contig6565:985..1645Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6565 986..1645 -
1683186922.6075678-CDS-P-wetherbeei_contig6565:1818..19741683186922.6075678-CDS-P-wetherbeei_contig6565:1818..1974Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6565 1819..1974 -
1683186922.6162481-CDS-P-wetherbeei_contig6565:2154..24781683186922.6162481-CDS-P-wetherbeei_contig6565:2154..2478Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6565 2155..2478 -
1683186922.6251795-CDS-P-wetherbeei_contig6565:2786..29781683186922.6251795-CDS-P-wetherbeei_contig6565:2786..2978Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6565 2787..2978 -
1683186922.6345918-CDS-P-wetherbeei_contig6565:3163..32171683186922.6345918-CDS-P-wetherbeei_contig6565:3163..3217Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6565 3164..3217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6565.2.1

>prot_P-wetherbeei_contig6565.2.1 ID=prot_P-wetherbeei_contig6565.2.1|Name=mRNA_P-wetherbeei_contig6565.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=462bp
MSARDRSERQAAKERAKEEQSREEKSSKNKAVDRPNLSAWYKRLERDCEA
RGGRERGDDEEGVDLSVQMMPSRCELCCVEMLNDEFCWDSECPASPVFKG
YYGEGMPAAELGAERVKAPPGVVKAKPQPAAAATGAAGAAAAAMDLGGEN
GDVNSGSGGGGGAAAPFRNTLRKHTVIDETAAYALQAPVKWIEWQKRRLP
TQENFSLDPVKYRWQCWLSMEDDPTSKDPSYRPPKRQHVAEPAAVAARCS
AVKTEVEPEVKPEPAKAASVSVAPPPGGGGVVPHLKSEATPALSAALVAG
RAGAAAAGGEAETGEERARPSPLPMLPPMLSPPMVPTPPPPVVLPPPPPL
MVPPPPPIATPPAAALVTLPPPLSLPVAPPQLTMPVVPVALASNHATHNG
PSAAAIRTDAWAGPMPVPVPVPVPTAGGSMLAGMVPRAQATPAMAAVAAS
GPEVAPPGSQW*
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mRNA from alignment at P-wetherbeei_contig6565:538..3219-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6565.2.1 ID=mRNA_P-wetherbeei_contig6565.2.1|Name=mRNA_P-wetherbeei_contig6565.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2682bp|location=Sequence derived from alignment at P-wetherbeei_contig6565:538..3219- (Phaeothamnion wetherbeei SAG_119_79)
GCATGAGTGCCAGGGATCGGTCAGAGCGCCAGGCGGCCAAGGAGCGGGCC
AAGGAGGTGAGCGTTAGAGCTGCTATGTGTTCGCCTTGTTTTGCAATCAT
GTGCAGTGGCTGCTGGTGGGTCGCTTTTGCACGCATCGGTTACAGGCGGC
GCTGGTGACTTTCGCCATGTTTTCCTGAAAGTGCGTTGTTCTAATTGATC
GCCTTTGTCGCCACTTTTTCTGTTCTGACTTTTGGGGGCAGGAGCAATCG
CGCGAGGAGAAGAGCTCAAAAAACAAGGCGGTGGACCGGCCCAACCTGTC
AGCGTGGTACAAGAGGCTCGAGCGGGATTGCGAGGCACGCGGCGGGCGTG
AGCGCGGCGACGACGAGGAAGGGGTGGACCTCAGTGTGCAGATGATGCCC
TCCCGCTGCGAACTCTGCTGCGTCGAGATGCTCGTGAGTCACAAATTGCC
ATTCTTCTTTTGTTCTTCCCGCTTTCCCGCCGCCGCTGTGGACGCCTGTC
ATCTGGCTGGCTGTTTGTAAGGCCAGTCAACCGGCAGGCAGTTGCGGCAA
CCAAACAACGTTTGAAGCGGTACGCTTATTTTTATCTTTAAAGCTTCTTC
TGTAACTCTGCGTCTAGACAGCTGGGGGGATCAATCGATGGCTTAAGCTG
CAATTAGACACCGTCGCTCCCCGGCCTGAAGCCGCGTGCAAATCCTGCTT
TTCCCTTACTGTTCGCTTGCTGTCTCCATAATCTGCTGCAGAACGACGAG
TTTTGTTGGGACAGCGAATGCCCAGCCTCGCCCGTCTTCAAGGGTTACTA
CGGCGAGGGCATGCCCGCAGCGGAGCTGGGCGCCGAGCGCGTGAAGGCGC
CGCCTGGCGTCGTGAAGGCAAAGCCGCAACCAGCCGCGGCTGCGACGGGC
GCGGCGGGGGCGGCGGCCGCGGCGATGGACCTAGGCGGCGAAAACGGCGA
CGTCAACAGCGGCAGCGGCGGCGGCGGCGGCGCCGCGGCGCCGTTCCGCA
ACACGCTGAGGAAGCACACGGTCATTGATGAGACGGCAGCATACGCCCTG
CAAGCTCCCGTCAAGGCATGTTCAAATGCAATTAGCGCCTGCTGGATCCA
TTGCTTGTTTGCACAGTGTTGCCGATTTTCAGTTCGCTTGCACTGCCGTC
CGTCTGCAACGGTTGTGTATGAAATTGTCTCGTCCACTCACGCCTTTCCG
CTACCCCTCCCGGCCCCGCCCTCTTTCCGCCTGTGACTTCGGCAGTGGAT
CGAGTGGCAGAAGCGGCGGCTTCCAACGCAGGAGAACTTCTCGCTGGACC
CGGTCAAATACCGCTGGCAGTGTTGGCTGTCGATGGAGGACGACCCCACC
AGCAAGGACCCCAGCTACCGCCCGCCAAAGCGTCAGCACGTTGCCGAGCC
GGTACGTTCCGTTTCGGGGATTCCACTCCCGCTCCGAAACCCCAAATCCC
GGCATGTAAAAACTTATACTGCGACCAATCTCCACAAAACTTCGCCCACG
GCCTTTAGAGCCCAGAGCTCTAAACCGCCACCCAATTGCGTTCCATTGAT
GCATCCGCTGACCACTTCTGGTAGGCTGCCGTGGCGGCGCGCTGCTCGGC
GGTCAAGACGGAGGTCGAGCCGGAGGTCAAGCCGGAGCCGGCCAAGGCCG
CGAGCGTGAGCGTGGCTCCGCCTCCCGGAGGCGGTGGTGTTGTGCCGCAT
TTGAAGAGCGAGGCGACGCCGGCTTTGAGTGCGGCGCTGGTGGCGGGGCG
CGCTGGCGCCGCTGCTGCTGGCGGCGAGGCGGAGACCGGTGAGGAGCGGG
CGCGGCCTTCGCCACTGCCGATGCTGCCGCCGATGCTGTCTCCGCCGATG
GTGCCGACGCCGCCGCCGCCTGTGGTGCTGCCCCCCCCGCCGCCACTGAT
GGTGCCGCCGCCGCCGCCGATCGCGACGCCGCCGGCGGCGGCGCTGGTGA
CGCTTCCGCCGCCGCTGTCATTGCCAGTGGCGCCGCCGCAGCTGACCATG
CCGGTCGTGCCGGTTGCGCTGGCCAGCAATCATGCGACGCACAACGGACC
CTCGGCGGCGGCAATACGGACGGACGCGTGGGCGGGTCCCATGCCGGTGC
CGGTGCCAGTGCCGGTGCCGACGGCGGGCGGCAGCATGCTGGCGGGCATG
GTCCCGCGCGCACAGGCGACGCCTGCCATGGCGGCGGTGGCGGCGTCGGG
GCCAGAGGTGGCGCCGCCTGGCTCGCAGTGGTAACACTGTAATGGACGAG
CGCGGGGCGTCAGAGATTGAGCAAAGCGGCGGGATGGGCGGTGGCACGAC
GGGAAGGGAAGCGGCCAGTTCCGCCTGCTGCTGCGGTGGGGGAGGGAGGG
TGTTGGGGGTCGCAGCCCATTCTCCGGCAGAGAATACGGACTGCAGGCAG
AGGCGGACGGCACAGCAAGCCGAGGCACACCATGTCACGGATGCTGGGGC
CAGGTAGGGGCCAGGCTGGGAGGAATGGGGGTATATTTCATGGCACAGAG
AGAGAGACAAGTTTCGCCTTCAGGAGGCCCGCCGTTGGGGGTCGTTGGGA
AGAGGAGCAGCTTTAACGATCGGTCCGGAGGGGCTTCATTGCCCGCGCTG
CTCTTCATGGGGCAGCGCGTGGCAACAAAACATTTAAAGAGAGGAGGCGC
GCATTAGCTGTAAAGAAAGAGGAAATTGGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6565:538..3219-

>mRNA_P-wetherbeei_contig6565.2.1 ID=mRNA_P-wetherbeei_contig6565.2.1|Name=mRNA_P-wetherbeei_contig6565.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1386bp|location=Sequence derived from alignment at P-wetherbeei_contig6565:538..3219- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGCCAGGGATCGGTCAGAGCGCCAGGCGGCCAAGGAGCGGGCCAA
GGAGGAGCAATCGCGCGAGGAGAAGAGCTCAAAAAACAAGGCGGTGGACC
GGCCCAACCTGTCAGCGTGGTACAAGAGGCTCGAGCGGGATTGCGAGGCA
CGCGGCGGGCGTGAGCGCGGCGACGACGAGGAAGGGGTGGACCTCAGTGT
GCAGATGATGCCCTCCCGCTGCGAACTCTGCTGCGTCGAGATGCTCAACG
ACGAGTTTTGTTGGGACAGCGAATGCCCAGCCTCGCCCGTCTTCAAGGGT
TACTACGGCGAGGGCATGCCCGCAGCGGAGCTGGGCGCCGAGCGCGTGAA
GGCGCCGCCTGGCGTCGTGAAGGCAAAGCCGCAACCAGCCGCGGCTGCGA
CGGGCGCGGCGGGGGCGGCGGCCGCGGCGATGGACCTAGGCGGCGAAAAC
GGCGACGTCAACAGCGGCAGCGGCGGCGGCGGCGGCGCCGCGGCGCCGTT
CCGCAACACGCTGAGGAAGCACACGGTCATTGATGAGACGGCAGCATACG
CCCTGCAAGCTCCCGTCAAGTGGATCGAGTGGCAGAAGCGGCGGCTTCCA
ACGCAGGAGAACTTCTCGCTGGACCCGGTCAAATACCGCTGGCAGTGTTG
GCTGTCGATGGAGGACGACCCCACCAGCAAGGACCCCAGCTACCGCCCGC
CAAAGCGTCAGCACGTTGCCGAGCCGGCTGCCGTGGCGGCGCGCTGCTCG
GCGGTCAAGACGGAGGTCGAGCCGGAGGTCAAGCCGGAGCCGGCCAAGGC
CGCGAGCGTGAGCGTGGCTCCGCCTCCCGGAGGCGGTGGTGTTGTGCCGC
ATTTGAAGAGCGAGGCGACGCCGGCTTTGAGTGCGGCGCTGGTGGCGGGG
CGCGCTGGCGCCGCTGCTGCTGGCGGCGAGGCGGAGACCGGTGAGGAGCG
GGCGCGGCCTTCGCCACTGCCGATGCTGCCGCCGATGCTGTCTCCGCCGA
TGGTGCCGACGCCGCCGCCGCCTGTGGTGCTGCCCCCCCCGCCGCCACTG
ATGGTGCCGCCGCCGCCGCCGATCGCGACGCCGCCGGCGGCGGCGCTGGT
GACGCTTCCGCCGCCGCTGTCATTGCCAGTGGCGCCGCCGCAGCTGACCA
TGCCGGTCGTGCCGGTTGCGCTGGCCAGCAATCATGCGACGCACAACGGA
CCCTCGGCGGCGGCAATACGGACGGACGCGTGGGCGGGTCCCATGCCGGT
GCCGGTGCCAGTGCCGGTGCCGACGGCGGGCGGCAGCATGCTGGCGGGCA
TGGTCCCGCGCGCACAGGCGACGCCTGCCATGGCGGCGGTGGCGGCGTCG
GGGCCAGAGGTGGCGCCGCCTGGCTCGCAGTGGTAA
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