mRNA_P-wetherbeei_contig6565.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6565.1.1
Unique NamemRNA_P-wetherbeei_contig6565.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6565.1.1 vs. uniprot
Match: W7TM71_9STRA (Ferredoxin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM71_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 3.020e-6
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 KGMENLNAQGPGEKKLLE-KKLKSIRLACCARVSGDITIKTKP 126
            KG +NLN + P E K L  KK   IRLACC R SGD+T+KTKP
Sbjct:  116 KGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
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BLAST of mRNA_P-wetherbeei_contig6565.1.1 vs. uniprot
Match: A0A835YVE2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVE2_9STRA)

HSP 1 Score: 45.4 bits (106), Expect = 9.740e-5
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 GMENLNAQGPGEKKLLEKKLKSIRLACCARVSGDITIKTKP 126
            GMEN + +G GE+K+L+     IRLACC RV+G +++  KP
Sbjct:   78 GMENCSKKGLGEEKMLKAVGADIRLACCTRVTGPVSVTVKP 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6565.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
W7TM71_9STRA3.020e-660.47Ferredoxin n=2 Tax=Monodopsidaceae TaxID=425072 Re... [more]
A0A835YVE2_9STRA9.740e-548.782Fe-2S ferredoxin-type domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6565contigP-wetherbeei_contig6565:2..130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog195253.Syn6312_3069
PFAMsFer2
Model size129
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.2e-05
EggNOG OGsCOG0633@1|root,COG0633@2|Bacteria,1G6S2@1117|Cyanobacteria,1H0H9@1129|Synechococcus
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-27_004210.1
DescriptionFerredoxin
Cds size123
COG categoryC
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186922.67267-UTR-P-wetherbeei_contig6565:1..71683186922.67267-UTR-P-wetherbeei_contig6565:1..7Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6565 2..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186922.6845925-CDS-P-wetherbeei_contig6565:7..1301683186922.6845925-CDS-P-wetherbeei_contig6565:7..130Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6565 8..130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6565.1.1prot_P-wetherbeei_contig6565.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6565 8..130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6565.1.1

>prot_P-wetherbeei_contig6565.1.1 ID=prot_P-wetherbeei_contig6565.1.1|Name=mRNA_P-wetherbeei_contig6565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp
MENLNAQGPGEKKLLEKKLKSIRLACCARVSGDITIKTKP*
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mRNA from alignment at P-wetherbeei_contig6565:2..130+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6565.1.1 ID=mRNA_P-wetherbeei_contig6565.1.1|Name=mRNA_P-wetherbeei_contig6565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig6565:2..130+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGGAATGGAGAACTTGAACGCCCAGGGCCCGGGGGAGAAGAAGCTGCT
GGAAAAGAAGCTCAAGTCAATCCGGCTGGCATGCTGCGCCCGCGTCTCGG
GGGACATTACCATCAAGACCAAGCCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6565:2..130+

>mRNA_P-wetherbeei_contig6565.1.1 ID=mRNA_P-wetherbeei_contig6565.1.1|Name=mRNA_P-wetherbeei_contig6565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig6565:2..130+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGAACTTGAACGCCCAGGGCCCGGGGGAGAAGAAGCTGCTGGAAAA
GAAGCTCAAGTCAATCCGGCTGGCATGCTGCGCCCGCGTCTCGGGGGACA
TTACCATCAAGACCAAGCCGTAA
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