mRNA_P-wetherbeei_contig6562.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6562.3.1
Unique NamemRNA_P-wetherbeei_contig6562.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6562.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6562contigP-wetherbeei_contig6562:1823..2520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size493
Hectar predicted targeting categoryother localisation
Exons2
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186922.4008403-CDS-P-wetherbeei_contig6562:1822..18571683186922.4008403-CDS-P-wetherbeei_contig6562:1822..1857Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6562 1823..1857 -
1683186922.4128988-CDS-P-wetherbeei_contig6562:2064..24821683186922.4128988-CDS-P-wetherbeei_contig6562:2064..2482Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6562 2065..2482 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186922.4223824-UTR-P-wetherbeei_contig6562:2482..25201683186922.4223824-UTR-P-wetherbeei_contig6562:2482..2520Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6562 2483..2520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6562.3.1prot_P-wetherbeei_contig6562.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6562 1823..2482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6562.3.1

>prot_P-wetherbeei_contig6562.3.1 ID=prot_P-wetherbeei_contig6562.3.1|Name=mRNA_P-wetherbeei_contig6562.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MSLPRERRGLDMSEMMDPLSMFAEENKKNRPSRDEVQTTADSGRHSGDVQ
PHHARPSREARGHSLPNDAWGAAISPAEAHPGSEDARYRAAPVDTLGPPL
PPLSSQTPYLPAEQRALPRQSPPSSAGRVAGPPGGPRMALPQPSGPGSFI
G
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mRNA from alignment at P-wetherbeei_contig6562:1823..2520-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6562.3.1 ID=mRNA_P-wetherbeei_contig6562.3.1|Name=mRNA_P-wetherbeei_contig6562.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=698bp|location=Sequence derived from alignment at P-wetherbeei_contig6562:1823..2520- (Phaeothamnion wetherbeei SAG_119_79)
CGCTCTTCTACTGTACTTGTACTTCGCTCTAATCGCGAATGTCGCTCCCG
CGAGAAAGGCGCGGGCTCGACATGTCCGAAATGATGGATCCGCTCAGCAT
GTTCGCGGAGGAGAACAAGAAAAATCGGCCTTCGAGGGACGAGGTGCAAA
CGACCGCAGATTCAGGACGACACTCGGGCGATGTGCAACCCCACCATGCC
CGGCCGTCTCGTGAAGCACGTGGCCATTCGTTGCCCAACGACGCATGGGG
TGCAGCGATATCTCCGGCAGAAGCGCATCCTGGGAGCGAAGACGCCCGCT
ACAGAGCTGCGCCTGTGGACACTCTCGGGCCGCCGCTGCCGCCGTTGTCA
TCGCAGACGCCATACTTGCCAGCGGAGCAGCGGGCGCTGCCAAGGCAGTC
GCCCCCTTCCTCCGCAGGACGCGTCGCAGGTCCTCCTGGCGGGCCGAGAA
TGGCGCCTCCACATCGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGT
CCCCACATGCACTCGAACGGCGGGCTGCCGCCGCAGCAAGCCGGCCCGCC
GCGGTACGGCGGGCCGCAGTACATGGCGCCGCCACAGTTGCGGCCAATGG
CGCCATGCCCGCCGCCGGGGCCCCCGCAGAGCGCCTTCTCTTCCGTGTCG
CCGTCGCCGCCGCTGCCACAGCCGTCGGGGCCAGGCTCCTTCATCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6562:1823..2520-

>mRNA_P-wetherbeei_contig6562.3.1 ID=mRNA_P-wetherbeei_contig6562.3.1|Name=mRNA_P-wetherbeei_contig6562.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig6562:1823..2520- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCTCCCGCGAGAAAGGCGCGGGCTCGACATGTCCGAAATGATGGA
TCCGCTCAGCATGTTCGCGGAGGAGAACAAGAAAAATCGGCCTTCGAGGG
ACGAGGTGCAAACGACCGCAGATTCAGGACGACACTCGGGCGATGTGCAA
CCCCACCATGCCCGGCCGTCTCGTGAAGCACGTGGCCATTCGTTGCCCAA
CGACGCATGGGGTGCAGCGATATCTCCGGCAGAAGCGCATCCTGGGAGCG
AAGACGCCCGCTACAGAGCTGCGCCTGTGGACACTCTCGGGCCGCCGCTG
CCGCCGTTGTCATCGCAGACGCCATACTTGCCAGCGGAGCAGCGGGCGCT
GCCAAGGCAGTCGCCCCCTTCCTCCGCAGGACGCGTCGCAGGTCCTCCTG
GCGGGCCGAGAATGGCGCTGCCACAGCCGTCGGGGCCAGGCTCCTTCATC
GGC
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