mRNA_P-wetherbeei_contig6562.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6562.1.1
Unique NamemRNA_P-wetherbeei_contig6562.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6562.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6562contigP-wetherbeei_contig6562:25..2027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1447
Hectar predicted targeting categoryother localisation
Exons3
Cds size1434
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186922.3281398-CDS-P-wetherbeei_contig6562:24..3991683186922.3281398-CDS-P-wetherbeei_contig6562:24..399Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6562 25..399 -
1683186922.3404176-CDS-P-wetherbeei_contig6562:699..14241683186922.3404176-CDS-P-wetherbeei_contig6562:699..1424Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6562 700..1424 -
1683186922.3482456-CDS-P-wetherbeei_contig6562:1680..20141683186922.3482456-CDS-P-wetherbeei_contig6562:1680..2014Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6562 1681..2014 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186922.356389-UTR-P-wetherbeei_contig6562:2014..20271683186922.356389-UTR-P-wetherbeei_contig6562:2014..2027Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6562 2015..2027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6562.1.1prot_P-wetherbeei_contig6562.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6562 25..2014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6562.1.1

>prot_P-wetherbeei_contig6562.1.1 ID=prot_P-wetherbeei_contig6562.1.1|Name=mRNA_P-wetherbeei_contig6562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=478bp
MHSNGGLPPQQAGPPRYGGPQYMAPPQLRPMAPCPPPGPPQSAFSSVSPS
PPLPQPSGPGSFIGGSPPGAGGVVYQGLTQLFRYAQTGASSLRSVVSSDL
TADDDGLFLDTELDPVDYEEFWNLSRPADDDAARRRAARFGADPPRDYLT
GEQQLFNILRTIMQLPDGSGAVTGDFMMTTYQLVFQPDLAWKPPPDDAAV
GVSNDGKPDCGAGCGAGCSIGRDAGGGIQNLLSGQRSPDYPGEHPAVAAP
AAVAPMPLSYFRIPNACVDRFEIGERRLSTQASGGGGPGFGSSSVASGVG
GIGGGGGGGFPVATATVLKVVTKDNRVWRLTLPKDVHPGKVEDVMHKNIY
PPEAGQGGRRRPPPLLRQQPQPPSQLEQQLPPPRQQQQQMPPPRQPLRQE
RQAQPLLGDPGEPLWAIATPLPPPPPPPPPPPQQQQRYQPEPVGARLFCF
EHRVRDRFPEKPSDVAELASPDRQRDGR
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mRNA from alignment at P-wetherbeei_contig6562:25..2027-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6562.1.1 ID=mRNA_P-wetherbeei_contig6562.1.1|Name=mRNA_P-wetherbeei_contig6562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2003bp|location=Sequence derived from alignment at P-wetherbeei_contig6562:25..2027- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGGTCCCCACATGCACTCGAACGGCGGGCTGCCGCCGCAGCAAGCCG
GCCCGCCGCGGTACGGCGGGCCGCAGTACATGGCGCCGCCACAGTTGCGG
CCAATGGCGCCATGCCCGCCGCCGGGGCCCCCGCAGAGCGCCTTCTCTTC
CGTGTCGCCGTCGCCGCCGCTGCCACAGCCGTCGGGGCCAGGCTCCTTCA
TCGGCGGGTCGCCGCCGGGCGCCGGCGGCGTCGTGTACCAGGGGCTGACG
CAGCTCTTTCGGTATGCACAGACAGGGGCGTCATCGCTGCGGAGTGTCGT
CAGCAGCGATTTGACCGCCGATGACGACGGCCTCTTCCTCGACACCGGTG
CGTTGCGCTCCCTCTTTGCCATTTCGCGGTGTCGTAACGTTTTTGGTCCC
CATTATGCGTTGCTCCATTGGTTTCGTGTGAAGGATTTCTTTCTTTTCCT
GAACATATCAGCTCAGATACACTGGTACGGCCCTTTTCCATGTATGGTTA
GGTAGTTTTCAGGCCCCTTATTTGATCCTTCGGGGTATGCGTCACATTCA
ACCATTTCTTTTCTGAAATGTTCAAGACTTCTCACATCCCCAATTTGGCA
CAGAGCTGGACCCCGTCGACTACGAAGAGTTTTGGAACCTCTCGCGACCA
GCGGACGACGACGCGGCGCGGCGGCGCGCGGCCCGCTTCGGCGCGGACCC
GCCGCGTGACTACCTCACAGGCGAACAGCAGCTCTTTAACATCCTGCGGA
CCATCATGCAGCTCCCGGACGGCAGCGGCGCCGTCACGGGCGACTTCATG
ATGACCACTTACCAGCTGGTCTTCCAGCCGGACCTCGCCTGGAAGCCGCC
GCCAGATGACGCTGCTGTTGGCGTCAGCAATGACGGGAAGCCTGACTGCG
GCGCCGGCTGCGGCGCCGGCTGCAGCATCGGCAGGGACGCGGGCGGCGGC
ATCCAGAACTTGCTTTCTGGACAGCGGTCACCGGACTATCCGGGGGAACA
CCCAGCGGTGGCTGCGCCCGCTGCCGTGGCGCCGATGCCTCTGTCGTATT
TCCGAATCCCGAACGCGTGCGTGGACCGCTTTGAGATAGGCGAGCGCAGG
CTATCGACGCAGGCCTCCGGCGGCGGCGGCCCGGGCTTTGGCAGCAGCAG
CGTCGCCAGCGGGGTCGGTGGCATTGGAGGGGGCGGCGGTGGCGGGTTTC
CGGTGGCGACGGCGACGGTGCTAAAAGTTGTGACGAAGGACAATCGCGTG
TGGCGGCTGACGCTCCCGAAGGACGTTCACCCCGGCAAGGTCGAGGACGT
CATGCACAAGAACATCTACCCGCCGGAGGTCCGAAGCTGCGTTAGGATCG
CGTTTTATGCTCTTTTTTTCTTTGCAGAACGTTCAGTGCTGCAGATGAGG
CTCTCGCTGCATGACTTGAGGCAGCAGCCTTGCTGGCTCGCCTTGAATGT
GGTAGTAGTGTGTCCTTTATTGGCCACAGACAGCTAGCGAAGGGCTTTCT
GGAAAGTGCGTTGCTATTGCATTGCTGTTTTTCGTGGCTTTTCGGCGACG
CGTCCTTCTCACAACTTTTTTACTTCAATCGTCTGGCCATTTTGGCACGT
TCACCGCCTTAACATATCAAAACAACAGGCGGGTCAGGGCGGCCGCAGAA
GGCCACCGCCGCTGCTGAGACAACAGCCGCAGCCGCCGTCGCAACTGGAG
CAACAACTACCGCCGCCGCGACAGCAGCAGCAGCAGATGCCGCCACCGCG
GCAGCCGCTGCGGCAGGAGCGGCAGGCGCAGCCTCTGCTCGGCGATCCGG
GCGAGCCGCTGTGGGCTATCGCGACGCCGCTGCCGCCGCCGCCGCCGCCT
CCACCGCCACCTCCACAGCAGCAGCAGCGGTACCAGCCGGAGCCGGTTGG
GGCACGCCTCTTCTGCTTCGAGCACCGTGTCAGGGACCGATTTCCGGAGA
AGCCCAGTGACGTCGCCGAGCTCGCGTCACCCGACCGGCAGCGGGACGGC
CGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6562:25..2027-

>mRNA_P-wetherbeei_contig6562.1.1 ID=mRNA_P-wetherbeei_contig6562.1.1|Name=mRNA_P-wetherbeei_contig6562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1434bp|location=Sequence derived from alignment at P-wetherbeei_contig6562:25..2027- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACTCGAACGGCGGGCTGCCGCCGCAGCAAGCCGGCCCGCCGCGGTA
CGGCGGGCCGCAGTACATGGCGCCGCCACAGTTGCGGCCAATGGCGCCAT
GCCCGCCGCCGGGGCCCCCGCAGAGCGCCTTCTCTTCCGTGTCGCCGTCG
CCGCCGCTGCCACAGCCGTCGGGGCCAGGCTCCTTCATCGGCGGGTCGCC
GCCGGGCGCCGGCGGCGTCGTGTACCAGGGGCTGACGCAGCTCTTTCGGT
ATGCACAGACAGGGGCGTCATCGCTGCGGAGTGTCGTCAGCAGCGATTTG
ACCGCCGATGACGACGGCCTCTTCCTCGACACCGAGCTGGACCCCGTCGA
CTACGAAGAGTTTTGGAACCTCTCGCGACCAGCGGACGACGACGCGGCGC
GGCGGCGCGCGGCCCGCTTCGGCGCGGACCCGCCGCGTGACTACCTCACA
GGCGAACAGCAGCTCTTTAACATCCTGCGGACCATCATGCAGCTCCCGGA
CGGCAGCGGCGCCGTCACGGGCGACTTCATGATGACCACTTACCAGCTGG
TCTTCCAGCCGGACCTCGCCTGGAAGCCGCCGCCAGATGACGCTGCTGTT
GGCGTCAGCAATGACGGGAAGCCTGACTGCGGCGCCGGCTGCGGCGCCGG
CTGCAGCATCGGCAGGGACGCGGGCGGCGGCATCCAGAACTTGCTTTCTG
GACAGCGGTCACCGGACTATCCGGGGGAACACCCAGCGGTGGCTGCGCCC
GCTGCCGTGGCGCCGATGCCTCTGTCGTATTTCCGAATCCCGAACGCGTG
CGTGGACCGCTTTGAGATAGGCGAGCGCAGGCTATCGACGCAGGCCTCCG
GCGGCGGCGGCCCGGGCTTTGGCAGCAGCAGCGTCGCCAGCGGGGTCGGT
GGCATTGGAGGGGGCGGCGGTGGCGGGTTTCCGGTGGCGACGGCGACGGT
GCTAAAAGTTGTGACGAAGGACAATCGCGTGTGGCGGCTGACGCTCCCGA
AGGACGTTCACCCCGGCAAGGTCGAGGACGTCATGCACAAGAACATCTAC
CCGCCGGAGGCGGGTCAGGGCGGCCGCAGAAGGCCACCGCCGCTGCTGAG
ACAACAGCCGCAGCCGCCGTCGCAACTGGAGCAACAACTACCGCCGCCGC
GACAGCAGCAGCAGCAGATGCCGCCACCGCGGCAGCCGCTGCGGCAGGAG
CGGCAGGCGCAGCCTCTGCTCGGCGATCCGGGCGAGCCGCTGTGGGCTAT
CGCGACGCCGCTGCCGCCGCCGCCGCCGCCTCCACCGCCACCTCCACAGC
AGCAGCAGCGGTACCAGCCGGAGCCGGTTGGGGCACGCCTCTTCTGCTTC
GAGCACCGTGTCAGGGACCGATTTCCGGAGAAGCCCAGTGACGTCGCCGA
GCTCGCGTCACCCGACCGGCAGCGGGACGGCCGC
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