mRNA_P-wetherbeei_contig6552.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig6552.2.1
Unique Name	mRNA_P-wetherbeei_contig6552.2.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig6552.2.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig6552.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig6552	contig	P-wetherbeei_contig6552:381..3394 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	3014
Hectar predicted targeting category	other localisation
Exons	1
Cds size	3012

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186921.5202096-CDS-P-wetherbeei_contig6552:382..3394	1683186921.5202096-CDS-P-wetherbeei_contig6552:382..3394	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig6552 383..3394 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig6552.2.1	prot_P-wetherbeei_contig6552.2.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig6552 383..3394 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig6552:381..3394-
coding sequence from alignment at P-wetherbeei_contig6552:381..3394-

protein sequence of mRNA_P-wetherbeei_contig6552.2.1

>prot_P-wetherbeei_contig6552.2.1 ID=prot_P-wetherbeei_contig6552.2.1|Name=mRNA_P-wetherbeei_contig6552.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1004bp
LGPKSGGGSGAAAARGAGGGARAAGGRDRWSFRLLWVQQGDEPAAEPSTT
AAKAGHAGPRSSSAKPGVSAALVPKLWSRHLTLHLGRDWMRGSEHELQPE
ESEASADRGDGSGGGAGADEDSNKDRTDVTVGFAVCILPGAADLMFCGPR
GLWLVCGADIVFNPSGSARLNALPVPELPADGRSRSGLRGPLPPAAAGVV
AAPRAAAAAKGAVGSNELPRNVESERRWLFSLHNITGFLVVLCPSGTVYD
IQPSIAGLRTRRLCTVAPPRPGLSPEQPPQPPQSGEQAVFTAFETCQDLA
VVGLADGSCCVLDLRSGQTVCVVPSPEQRVCLGDSFFAIASTLPPGQFRG
AGADGREMQAPALKRPAAAVTVTATGAMAAMGAADAAVAPEVRLPCARCR
YRTWRGSGPAGSFGIFSASAVLRVHPCDPPWHRHPMSPLETQQVLGGSGG
NVAIAAAAQAYSTQAQPAAAAAEESRFDAMAGKLGHQLLRLPSASDQCAA
AATVGADGSSDNGVALAARIAALGSPLPGNAAVAATLAAGAKETLRRLAA
LRQHLDDARVAWQVDTNAARDVRAQLAAVHPADALLERPLAAWLAEWDAH
DAAACTAAAAAKAAAVPAVGGEKVIGRGAGKGAIGAVASADHGAVLGSST
AVGNGGCAHAAKHALLASEELSLMTGLLLPHGFNGTGGSGIADGVFEGLD
AVLERLLSEGYDGDVGSDRGAALGGAHCRDPGQHAKHSVSSVDGSGGIAS
SASIRGLMLLSGWSSGRPDSHLFDVVCRALYRRRPAMLPRFVESVVRYAH
FSRRPVEPSSGGVLEGSGFRGGVGGSDGDVVAGGCGGSGPWGGRGRENPG
IGALAAMPLSGLAHGMLHALEDWFPEAAGGRGGAAGPAASDGRGNGSDID
RSRRQDDAAAVRGRDDEAAAEEPSAGSGAAAVPAGRPSSTRAHTPGLSPL
RDRPLPPPPPPPPSLQPQSTAPSRPAVPPPSPPPPPPPPPERQFSRALAS
LPPP

mRNA from alignment at P-wetherbeei_contig6552:381..3394-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig6552.2.1 ID=mRNA_P-wetherbeei_contig6552.2.1|Name=mRNA_P-wetherbeei_contig6552.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3014bp|location=Sequence derived from alignment at P-wetherbeei_contig6552:381..3394- (Phaeothamnion wetherbeei SAG_119_79)
CTCGGTCCGAAGTCCGGCGGCGGCAGCGGCGCTGCCGCTGCCAGGGGGGC
CGGAGGCGGTGCCAGGGCTGCGGGAGGGCGGGATCGGTGGAGCTTTCGCC
TCCTTTGGGTCCAGCAGGGAGATGAGCCGGCGGCAGAGCCCTCGACGACG
GCGGCCAAGGCGGGCCATGCTGGCCCGCGATCGTCGTCTGCAAAACCTGG
CGTGTCTGCTGCACTGGTGCCGAAGCTGTGGTCGCGGCACCTGACCCTCC
ATTTGGGCCGCGACTGGATGCGGGGCTCTGAACACGAGCTCCAGCCTGAG
GAATCGGAAGCCTCTGCAGACCGCGGCGACGGCAGCGGCGGCGGCGCCGG
CGCGGACGAAGATAGCAACAAGGATCGCACTGACGTCACAGTCGGGTTCG
CCGTGTGCATCCTACCGGGCGCCGCCGACTTGATGTTCTGCGGTCCCCGC
GGCTTGTGGCTTGTGTGCGGCGCCGACATCGTTTTCAATCCGTCCGGCTC
GGCCCGCTTGAACGCCCTGCCCGTTCCGGAGCTTCCGGCAGACGGCCGGT
CCCGGTCCGGCTTGCGGGGCCCATTGCCGCCGGCGGCTGCCGGCGTGGTG
GCGGCGCCGCGTGCGGCAGCAGCGGCAAAAGGCGCGGTGGGAAGCAACGA
GCTGCCACGGAACGTCGAAAGTGAGCGCCGGTGGCTGTTTTCCCTGCACA
ACATAACAGGTTTCTTGGTGGTGCTTTGCCCCAGCGGCACAGTTTACGAC
ATCCAACCCAGCATCGCCGGATTGCGGACGCGTCGGCTGTGCACCGTTGC
CCCCCCGCGGCCCGGTCTGTCGCCGGAACAACCGCCGCAACCGCCGCAAT
CGGGCGAACAGGCAGTTTTCACGGCGTTTGAGACCTGCCAGGACCTGGCG
GTCGTAGGGTTGGCCGACGGCAGCTGCTGCGTCCTCGACTTGCGCTCGGG
GCAAACTGTTTGCGTCGTCCCTTCACCGGAACAGCGAGTCTGCCTTGGCG
ACAGCTTCTTTGCCATTGCGTCGACATTGCCGCCCGGGCAATTTCGCGGC
GCCGGTGCGGATGGTCGGGAAATGCAAGCGCCAGCACTCAAAAGACCCGC
AGCGGCGGTGACGGTGACGGCGACGGGGGCGATGGCGGCTATGGGGGCGG
CAGACGCGGCGGTGGCCCCCGAGGTGCGGTTACCATGCGCTCGATGCCGC
TACCGGACGTGGCGCGGCAGCGGCCCCGCGGGTTCCTTCGGCATCTTTTC
TGCATCTGCTGTCTTGCGGGTGCATCCTTGCGACCCGCCTTGGCACCGCC
ATCCCATGTCCCCTTTGGAGACGCAACAGGTCCTGGGAGGTTCTGGTGGC
AATGTCGCCATCGCCGCCGCCGCGCAGGCATACAGCACGCAGGCTCAGCC
TGCGGCCGCGGCTGCAGAAGAGTCGCGCTTCGACGCGATGGCAGGTAAGC
TTGGTCACCAGCTCTTGCGATTGCCCTCGGCGTCTGACCAGTGCGCAGCA
GCAGCCACCGTCGGCGCTGACGGCAGCTCCGACAACGGCGTGGCACTGGC
GGCGCGCATCGCCGCCTTGGGCAGCCCGCTGCCCGGCAACGCCGCTGTGG
CGGCGACGCTGGCCGCCGGGGCAAAGGAGACGCTGAGGCGGCTTGCGGCG
CTGCGGCAACACCTCGACGACGCCCGCGTCGCCTGGCAAGTCGACACCAA
CGCGGCACGAGACGTTCGCGCCCAGCTTGCAGCGGTCCATCCGGCAGACG
CTTTGCTGGAGCGGCCGCTGGCTGCATGGCTCGCCGAGTGGGACGCGCAC
GACGCGGCGGCGTGTACAGCTGCAGCGGCGGCGAAAGCGGCGGCTGTGCC
GGCCGTCGGAGGGGAAAAGGTGATCGGGCGGGGCGCTGGCAAAGGTGCAA
TCGGTGCTGTTGCATCAGCCGACCACGGCGCTGTGCTTGGCAGCAGCACG
GCGGTTGGGAACGGCGGGTGCGCGCACGCGGCCAAGCACGCGCTTCTGGC
GTCAGAGGAGCTTTCGCTGATGACCGGACTGCTCCTGCCACATGGTTTCA
ATGGCACTGGCGGCAGCGGCATCGCTGACGGCGTATTTGAAGGGCTGGAC
GCCGTTCTGGAGCGGCTGCTGTCTGAAGGGTACGACGGCGACGTAGGCTC
CGATCGCGGCGCAGCGCTCGGCGGCGCGCACTGCCGAGACCCGGGACAAC
ACGCCAAGCACAGTGTCAGCAGTGTTGATGGCAGCGGCGGCATTGCATCT
TCTGCCAGCATCAGGGGTCTCATGCTCCTGAGCGGCTGGTCTTCGGGGCG
CCCCGACTCGCATCTCTTCGATGTGGTGTGCCGCGCCCTCTACCGTCGCC
GCCCTGCCATGCTGCCGCGGTTCGTAGAAAGTGTCGTCCGGTACGCGCAC
TTTTCGCGTCGTCCAGTCGAGCCGAGCAGCGGAGGCGTTCTTGAAGGCAG
CGGCTTTCGCGGCGGCGTTGGCGGGAGCGACGGCGACGTTGTAGCTGGCG
GCTGTGGCGGCAGCGGACCGTGGGGTGGGAGAGGGAGAGAAAACCCCGGC
ATTGGAGCCCTTGCTGCCATGCCTCTAAGCGGGCTGGCGCATGGAATGCT
CCACGCGCTGGAAGATTGGTTCCCGGAGGCCGCAGGAGGCCGTGGCGGGG
CCGCTGGCCCCGCTGCCAGTGACGGCAGAGGCAACGGGAGCGACATTGAT
CGGTCGCGCCGGCAAGATGACGCAGCGGCAGTACGCGGGCGAGACGACGA
GGCGGCGGCGGAAGAGCCTTCCGCCGGAAGCGGCGCCGCTGCTGTCCCGG
CTGGCCGTCCGTCTTCCACCAGAGCTCATACACCAGGACTTTCTCCGCTG
CGGGATCGTCCACTGCCGCCGCCACCGCCGCCGCCGCCGTCGTTACAACC
GCAATCAACGGCACCATCGCGGCCTGCAGTGCCGCCGCCATCACCACCGC
CGCCGCCGCCGCCGCCGCCGGAACGGCAGTTCTCCCGCGCGCTCGCCAGC
CTGCCCCCGCCGAC

Coding sequence (CDS) from alignment at P-wetherbeei_contig6552:381..3394-

>mRNA_P-wetherbeei_contig6552.2.1 ID=mRNA_P-wetherbeei_contig6552.2.1|Name=mRNA_P-wetherbeei_contig6552.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3012bp|location=Sequence derived from alignment at P-wetherbeei_contig6552:381..3394- (Phaeothamnion wetherbeei SAG_119_79)
CTCGGTCCGAAGTCCGGCGGCGGCAGCGGCGCTGCCGCTGCCAGGGGGGC
CGGAGGCGGTGCCAGGGCTGCGGGAGGGCGGGATCGGTGGAGCTTTCGCC
TCCTTTGGGTCCAGCAGGGAGATGAGCCGGCGGCAGAGCCCTCGACGACG
GCGGCCAAGGCGGGCCATGCTGGCCCGCGATCGTCGTCTGCAAAACCTGG
CGTGTCTGCTGCACTGGTGCCGAAGCTGTGGTCGCGGCACCTGACCCTCC
ATTTGGGCCGCGACTGGATGCGGGGCTCTGAACACGAGCTCCAGCCTGAG
GAATCGGAAGCCTCTGCAGACCGCGGCGACGGCAGCGGCGGCGGCGCCGG
CGCGGACGAAGATAGCAACAAGGATCGCACTGACGTCACAGTCGGGTTCG
CCGTGTGCATCCTACCGGGCGCCGCCGACTTGATGTTCTGCGGTCCCCGC
GGCTTGTGGCTTGTGTGCGGCGCCGACATCGTTTTCAATCCGTCCGGCTC
GGCCCGCTTGAACGCCCTGCCCGTTCCGGAGCTTCCGGCAGACGGCCGGT
CCCGGTCCGGCTTGCGGGGCCCATTGCCGCCGGCGGCTGCCGGCGTGGTG
GCGGCGCCGCGTGCGGCAGCAGCGGCAAAAGGCGCGGTGGGAAGCAACGA
GCTGCCACGGAACGTCGAAAGTGAGCGCCGGTGGCTGTTTTCCCTGCACA
ACATAACAGGTTTCTTGGTGGTGCTTTGCCCCAGCGGCACAGTTTACGAC
ATCCAACCCAGCATCGCCGGATTGCGGACGCGTCGGCTGTGCACCGTTGC
CCCCCCGCGGCCCGGTCTGTCGCCGGAACAACCGCCGCAACCGCCGCAAT
CGGGCGAACAGGCAGTTTTCACGGCGTTTGAGACCTGCCAGGACCTGGCG
GTCGTAGGGTTGGCCGACGGCAGCTGCTGCGTCCTCGACTTGCGCTCGGG
GCAAACTGTTTGCGTCGTCCCTTCACCGGAACAGCGAGTCTGCCTTGGCG
ACAGCTTCTTTGCCATTGCGTCGACATTGCCGCCCGGGCAATTTCGCGGC
GCCGGTGCGGATGGTCGGGAAATGCAAGCGCCAGCACTCAAAAGACCCGC
AGCGGCGGTGACGGTGACGGCGACGGGGGCGATGGCGGCTATGGGGGCGG
CAGACGCGGCGGTGGCCCCCGAGGTGCGGTTACCATGCGCTCGATGCCGC
TACCGGACGTGGCGCGGCAGCGGCCCCGCGGGTTCCTTCGGCATCTTTTC
TGCATCTGCTGTCTTGCGGGTGCATCCTTGCGACCCGCCTTGGCACCGCC
ATCCCATGTCCCCTTTGGAGACGCAACAGGTCCTGGGAGGTTCTGGTGGC
AATGTCGCCATCGCCGCCGCCGCGCAGGCATACAGCACGCAGGCTCAGCC
TGCGGCCGCGGCTGCAGAAGAGTCGCGCTTCGACGCGATGGCAGGTAAGC
TTGGTCACCAGCTCTTGCGATTGCCCTCGGCGTCTGACCAGTGCGCAGCA
GCAGCCACCGTCGGCGCTGACGGCAGCTCCGACAACGGCGTGGCACTGGC
GGCGCGCATCGCCGCCTTGGGCAGCCCGCTGCCCGGCAACGCCGCTGTGG
CGGCGACGCTGGCCGCCGGGGCAAAGGAGACGCTGAGGCGGCTTGCGGCG
CTGCGGCAACACCTCGACGACGCCCGCGTCGCCTGGCAAGTCGACACCAA
CGCGGCACGAGACGTTCGCGCCCAGCTTGCAGCGGTCCATCCGGCAGACG
CTTTGCTGGAGCGGCCGCTGGCTGCATGGCTCGCCGAGTGGGACGCGCAC
GACGCGGCGGCGTGTACAGCTGCAGCGGCGGCGAAAGCGGCGGCTGTGCC
GGCCGTCGGAGGGGAAAAGGTGATCGGGCGGGGCGCTGGCAAAGGTGCAA
TCGGTGCTGTTGCATCAGCCGACCACGGCGCTGTGCTTGGCAGCAGCACG
GCGGTTGGGAACGGCGGGTGCGCGCACGCGGCCAAGCACGCGCTTCTGGC
GTCAGAGGAGCTTTCGCTGATGACCGGACTGCTCCTGCCACATGGTTTCA
ATGGCACTGGCGGCAGCGGCATCGCTGACGGCGTATTTGAAGGGCTGGAC
GCCGTTCTGGAGCGGCTGCTGTCTGAAGGGTACGACGGCGACGTAGGCTC
CGATCGCGGCGCAGCGCTCGGCGGCGCGCACTGCCGAGACCCGGGACAAC
ACGCCAAGCACAGTGTCAGCAGTGTTGATGGCAGCGGCGGCATTGCATCT
TCTGCCAGCATCAGGGGTCTCATGCTCCTGAGCGGCTGGTCTTCGGGGCG
CCCCGACTCGCATCTCTTCGATGTGGTGTGCCGCGCCCTCTACCGTCGCC
GCCCTGCCATGCTGCCGCGGTTCGTAGAAAGTGTCGTCCGGTACGCGCAC
TTTTCGCGTCGTCCAGTCGAGCCGAGCAGCGGAGGCGTTCTTGAAGGCAG
CGGCTTTCGCGGCGGCGTTGGCGGGAGCGACGGCGACGTTGTAGCTGGCG
GCTGTGGCGGCAGCGGACCGTGGGGTGGGAGAGGGAGAGAAAACCCCGGC
ATTGGAGCCCTTGCTGCCATGCCTCTAAGCGGGCTGGCGCATGGAATGCT
CCACGCGCTGGAAGATTGGTTCCCGGAGGCCGCAGGAGGCCGTGGCGGGG
CCGCTGGCCCCGCTGCCAGTGACGGCAGAGGCAACGGGAGCGACATTGAT
CGGTCGCGCCGGCAAGATGACGCAGCGGCAGTACGCGGGCGAGACGACGA
GGCGGCGGCGGAAGAGCCTTCCGCCGGAAGCGGCGCCGCTGCTGTCCCGG
CTGGCCGTCCGTCTTCCACCAGAGCTCATACACCAGGACTTTCTCCGCTG
CGGGATCGTCCACTGCCGCCGCCACCGCCGCCGCCGCCGTCGTTACAACC
GCAATCAACGGCACCATCGCGGCCTGCAGTGCCGCCGCCATCACCACCGC
CGCCGCCGCCGCCGCCGCCGGAACGGCAGTTCTCCCGCGCGCTCGCCAGC
CTGCCCCCGCCG