mRNA_P-wetherbeei_contig6547.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6547.4.1
Unique NamemRNA_P-wetherbeei_contig6547.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6547.4.1 vs. uniprot
Match: D7FHR9_ECTSI (Oxidoreductase, NAD-binding, myo-inositol 2-dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHR9_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 2.080e-44
Identity = 72/88 (81.82%), Postives = 80/88 (90.91%), Query Frame = 1
Query:    1 GLVKHDNHFPSQVSKWTGAAVQQADLPFSFFMTRYADAYKNETKAFCDILKSGGDVSPSGDDGAAALKMAMACDKSLKEGRPVLMSEI 264
            GLVKH+NHFPS V KWTG +VQQADLP +FFMTRYADAYKNET+AFC IL+ GGDV+PSG+DG AALKMAMACDKSLKEGRPV +SEI
Sbjct:  282 GLVKHENHFPSAVQKWTGTSVQQADLPHAFFMTRYADAYKNETRAFCKILEEGGDVTPSGEDGLAALKMAMACDKSLKEGRPVNLSEI 369          
BLAST of mRNA_P-wetherbeei_contig6547.4.1 vs. uniprot
Match: A0A835Z516_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z516_9STRA)

HSP 1 Score: 144 bits (362), Expect = 8.770e-40
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 GLVKHDNHFPSQVSKWTGAAVQQADLPFSFFMTRYADAYKNETKAFCDILKSGGDVSPSGDDGAAALKMAMACDKSLKEGRPVLMSEIK 267
            GLVKHDN FP+ VS W G +V+ AD   +FFMTRYADAYKNETKAFC+ILKSGG+VSPSGDDG AAL+MAMACDKSLKEGRPV +SE++
Sbjct:  283 GLVKHDNVFPNTVSVWDGKSVRHADAIHNFFMTRYADAYKNETKAFCEILKSGGEVSPSGDDGRAALEMAMACDKSLKEGRPVKISEVQ 371          
BLAST of mRNA_P-wetherbeei_contig6547.4.1 vs. uniprot
Match: A0A835Z446_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z446_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.800e-38
Identity = 68/89 (76.40%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    1 GLVKHDNHFPSQVSKWTGAAVQQADLPFSFFMTRYADAYKNETKAFCDILKSGGDVSPSGDDGAAALKMAMACDKSLKEGRPVLMSEIK 267
            GLVKHDN FPS VS W G +V+ AD   +FFMTRYADAYKNETKAFC+ILKSGG VSPSGDDG AAL+MAMACD SL+ GRPVLMSE++
Sbjct:  300 GLVKHDNVFPSTVSVWDGTSVRHADAIHNFFMTRYADAYKNETKAFCEILKSGGAVSPSGDDGRAALEMAMACDMSLRLGRPVLMSEVQ 388          
BLAST of mRNA_P-wetherbeei_contig6547.4.1 vs. uniprot
Match: A0A835Z9N2_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N2_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.300e-37
Identity = 65/89 (73.03%), Postives = 77/89 (86.52%), Query Frame = 1
Query:    1 GLVKHDNHFPSQVSKWTGAAVQQADLPFSFFMTRYADAYKNETKAFCDILKSGGDVSPSGDDGAAALKMAMACDKSLKEGRPVLMSEIK 267
            GLVKH+N FP+ V KW G AV++AD   +FFMTRYADAYKNETKAFC +LK+GG+VSPSGDDGA AL+MAMACD SL+ GRPVLMSE++
Sbjct:  269 GLVKHENVFPNTVEKWNGDAVRRADPMHNFFMTRYADAYKNETKAFCALLKAGGEVSPSGDDGARALEMAMACDLSLRLGRPVLMSEVQ 357          
BLAST of mRNA_P-wetherbeei_contig6547.4.1 vs. uniprot
Match: A0A4D9CRG6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRG6_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.260e-24
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 GLVKHDNHFPSQVSKWTGAAVQQADLPFSFFMTRYADAYKNETKAFCDILKSGGDVSPSGDDGAAALKMAMACDKSLKEGRPV 249
            G + HDN +P+ V  W G +  + DLP +FFM+RYA+AYKNET AFC  L+ G   SPSG DG  AL +AMACDKS KE RPV
Sbjct:  283 GTLMHDNLYPNNVHLWNGQSTGRIDLPHNFFMSRYAEAYKNETIAFCQTLQEGKAPSPSGHDGKMALVLAMACDKSFKEKRPV 365          
BLAST of mRNA_P-wetherbeei_contig6547.4.1 vs. uniprot
Match: M2XJ83_GALSU (Myo-inositol 2-dehydrogenase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XJ83_GALSU)

HSP 1 Score: 89.0 bits (219), Expect = 5.610e-19
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 GLVKHDNHFPSQVSKWTGAAVQQADLPFSFFMTRYADAYKNETKAFCDILKSGGDVSPSGDDGAAALKMAMACDKSLKEGRPVLMSEI 264
            GLV+  N+FP+ V    G +++++DLPF+FFM RY DAY+NETK F   +    +   SG DG AA+ MA+A  KSL E RPV +SEI
Sbjct:  281 GLVRFGNNFPNNVFIEDGQSIRRSDLPFNFFMDRYTDAYRNETKEFVKCILENKEPPTSGRDGTAAMAMAIAAKKSLLEKRPVKLSEI 368          
BLAST of mRNA_P-wetherbeei_contig6547.4.1 vs. uniprot
Match: A0A6U0U7F2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0U7F2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.090e-15
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 GLVKHDNHFPSQVSKWTGAAVQQADLPFSFFMTRYADAYKNETKAFCDILKSGGDVSPSGDDGAAALKMAMACDKSLKEGRPVLMSEI 264
            G+++ DN +P+    +T      AD+PF FFM+RY +AY  ET +FCD L +   V  +G+DG  AL M++A D+S  EGR V  SEI
Sbjct:  203 GMIQTDNMYPNTARIYTKDFTGNADMPFDFFMSRYKEAYVQETLSFCDSLVNDAPVGCTGEDGLMALIMSIAADRSASEGRWVKFSEI 290          
BLAST of mRNA_P-wetherbeei_contig6547.4.1 vs. uniprot
Match: K8YRS1_NANGC (Oxidoreductase domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRS1_NANGC)

HSP 1 Score: 78.2 bits (191), Expect = 6.180e-15
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 GLVKHDNHFPSQVSKWTGAAVQQADLPFSFFMTRYADAYKNETKAFCDILKSGGDVSPSGDDGAAALKMAMACDKSLKEGRPVLMSEI 264
            G++  DN +P+    +T  + + ADLP+ FFM+RY DAY  ETK F   L   G V  +G+DG  AL MA+A +KS  EGR V   EI
Sbjct:  300 GMIATDNMYPNTARIFTKDSTRNADLPYDFFMSRYKDAYLQETKEFVKCLSEDGPVPCTGEDGLIALVMAIAAEKSALEGRWVDFKEI 387          
BLAST of mRNA_P-wetherbeei_contig6547.4.1 vs. uniprot
Match: A0A1V9Z9E5_9STRA (Oxidoreductase family n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9E5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.580e-14
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 GLVKHDNHFPSQVSKWTGAAVQQADLPFSFFMTRYADAYKNETKAFCDILKSGGDVSP-SGDDGAAALKMAMACDKSLKEGRPVLMSEI 264
            G V  +N++P+ V+  TG ++ + DLP  FF+ RY DAYK+E  AF D+        P SG DG  ALK+ +A  +S+KE RPVL+SE 
Sbjct:  253 GAVSCENNYPNTVTISTGTSIAR-DLPLHFFIDRYMDAYKDELSAFVDVCLDPRTAPPVSGHDGRQALKLGLAATRSMKENRPVLLSEF 340          
BLAST of mRNA_P-wetherbeei_contig6547.4.1 vs. uniprot
Match: A0A7S1UAZ2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAZ2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.170e-14
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 GLVKHDNHFPSQVSKWTGAAVQQADLPFSFFMTRYADAYKNETKAFCDILKSGGDVSPSGDDGAAALKMAMACDKSLKEGRPVLMSEI 264
            G+++ DN +P+    +T      AD+PF FFM+RY +AY  ET +FCD L +   V  +G+DG  AL M++A D+S  E R V  SEI
Sbjct:  303 GMIQTDNMYPNTARIFTKDFTGNADMPFDFFMSRYKEAYVQETLSFCDSLVTDAPVQCTGEDGLMALIMSIAADRSAAENRWVKFSEI 390          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6547.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHR9_ECTSI2.080e-4481.82Oxidoreductase, NAD-binding, myo-inositol 2-dehydr... [more]
A0A835Z516_9STRA8.770e-4076.40Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A835Z446_9STRA1.800e-3876.40Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A835Z9N2_9STRA1.300e-3773.03Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A4D9CRG6_9STRA5.260e-2457.83Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
M2XJ83_GALSU5.610e-1950.00Myo-inositol 2-dehydrogenase n=1 Tax=Galdieria sul... [more]
A0A6U0U7F2_9STRA1.090e-1544.32Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
K8YRS1_NANGC6.180e-1545.45Oxidoreductase domain protein n=2 Tax=Monodopsidac... [more]
A0A1V9Z9E5_9STRA1.580e-1444.94Oxidoreductase family n=1 Tax=Achlya hypogyna TaxI... [more]
A0A7S1UAZ2_9STRA2.170e-1443.18Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6547contigP-wetherbeei_contig6547:2823..3095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FHR9
PFAMsGFO_IDH_MocA,GFO_IDH_MocA_C
Model size273
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.42e-45
EggNOG OGsCOG0673@1|root,KOG2741@2759|Eukaryota
DescriptionD-xylose 1-dehydrogenase (NADP ) activity
Cds size273
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186921.093268-CDS-P-wetherbeei_contig6547:2822..30951683186921.093268-CDS-P-wetherbeei_contig6547:2822..3095Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6547 2823..3095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6547.4.1prot_P-wetherbeei_contig6547.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6547 2823..3095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6547.4.1

>prot_P-wetherbeei_contig6547.4.1 ID=prot_P-wetherbeei_contig6547.4.1|Name=mRNA_P-wetherbeei_contig6547.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
GLVKHDNHFPSQVSKWTGAAVQQADLPFSFFMTRYADAYKNETKAFCDIL
KSGGDVSPSGDDGAAALKMAMACDKSLKEGRPVLMSEIKP*
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mRNA from alignment at P-wetherbeei_contig6547:2823..3095-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6547.4.1 ID=mRNA_P-wetherbeei_contig6547.4.1|Name=mRNA_P-wetherbeei_contig6547.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig6547:2823..3095- (Phaeothamnion wetherbeei SAG_119_79)
GGCCTGGTGAAGCACGACAACCACTTCCCGTCGCAGGTATCCAAGTGGAC GGGCGCCGCCGTGCAGCAGGCCGACCTGCCCTTCTCCTTCTTCATGACGC GGTATGCCGACGCCTACAAAAACGAGACCAAGGCCTTCTGTGATATCCTC AAGTCGGGCGGCGACGTCTCCCCGTCGGGTGACGACGGCGCCGCCGCGCT CAAGATGGCCATGGCGTGCGACAAGTCCCTCAAGGAGGGCCGCCCGGTCC TCATGTCCGAGATCAAGCCGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6547:2823..3095-

>mRNA_P-wetherbeei_contig6547.4.1 ID=mRNA_P-wetherbeei_contig6547.4.1|Name=mRNA_P-wetherbeei_contig6547.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig6547:2823..3095- (Phaeothamnion wetherbeei SAG_119_79)
GGCCTGGTGAAGCACGACAACCACTTCCCGTCGCAGGTATCCAAGTGGAC
GGGCGCCGCCGTGCAGCAGGCCGACCTGCCCTTCTCCTTCTTCATGACGC
GGTATGCCGACGCCTACAAAAACGAGACCAAGGCCTTCTGTGATATCCTC
AAGTCGGGCGGCGACGTCTCCCCGTCGGGTGACGACGGCGCCGCCGCGCT
CAAGATGGCCATGGCGTGCGACAAGTCCCTCAAGGAGGGCCGCCCGGTCC
TCATGTCCGAGATCAAGCCGTAG
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