mRNA_P-wetherbeei_contig6527.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6527.1.1
Unique NamemRNA_P-wetherbeei_contig6527.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6527.1.1 vs. uniprot
Match: A0A7S1XJ32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJ32_9STRA)

HSP 1 Score: 187 bits (475), Expect = 5.180e-57
Identity = 83/101 (82.18%), Postives = 93/101 (92.08%), Query Frame = 3
Query:  120 DRRVWTKEEDNGIKTLVAKYGTRSWSVIAEHIITDFNVHGRSGKQCRERWHNHLDPCINKNAWTEEEERVMAEAHRELGNRWSEIAKRLPGRTDNHVKNHW 422
            DRRVWTKEED+ I+ LVAK+GTRSWSVIAE I+TDFN+ GR+GKQCRERWHNHLDP INK AWT EEE++M EAH+ELGN+WSEIAKRLPGRTDNHVKNHW
Sbjct:   52 DRRVWTKEEDHAIRELVAKHGTRSWSVIAERIVTDFNITGRTGKQCRERWHNHLDPTINKGAWTPEEEQIMVEAHKELGNKWSEIAKRLPGRTDNHVKNHW 152          
BLAST of mRNA_P-wetherbeei_contig6527.1.1 vs. uniprot
Match: F0YL28_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL28_AURAN)

HSP 1 Score: 183 bits (465), Expect = 2.530e-56
Identity = 84/107 (78.50%), Postives = 94/107 (87.85%), Query Frame = 3
Query:  105 MGAVIDRRVWTKEEDNGIKTLVAKYGTRSWSVIAEHIITDFNVHGRSGKQCRERWHNHLDPCINKNAWTEEEERVMAEAHRELG-NRWSEIAKRLPGRTDNHVKNHW 422
            M +V DRRVWT +EDN I+ LV KYGTRSWSVIAEHI+ DFN+ GR+GKQCRERWHNHLDP INK AWTEEEER+MA+AH+ LG N+WSEIAK LPGRTDNHVKNHW
Sbjct:    1 MSSVGDRRVWTVQEDNAIRQLVMKYGTRSWSVIAEHIVQDFNIDGRTGKQCRERWHNHLDPHINKEAWTEEEERIMADAHKTLGCNKWSEIAKLLPGRTDNHVKNHW 107          
BLAST of mRNA_P-wetherbeei_contig6527.1.1 vs. uniprot
Match: F0YL55_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL55_AURAN)

HSP 1 Score: 180 bits (457), Expect = 4.380e-56
Identity = 78/101 (77.23%), Postives = 93/101 (92.08%), Query Frame = 3
Query:  120 DRRVWTKEEDNGIKTLVAKYGTRSWSVIAEHIITDFNVHGRSGKQCRERWHNHLDPCINKNAWTEEEERVMAEAHRELGNRWSEIAKRLPGRTDNHVKNHW 422
            DRRVW+++ED+ IK LV +YGTRSWSVIAEHI++D+N+ GR+GKQCRERWHNHLDP INK+AWT +EERVMA+AH+ LGN+WSEIAK LPGRTDNHVKNHW
Sbjct:    5 DRRVWSQQEDSAIKDLVMRYGTRSWSVIAEHIVSDYNIEGRTGKQCRERWHNHLDPHINKDAWTADEERVMADAHKSLGNKWSEIAKLLPGRTDNHVKNHW 105          
BLAST of mRNA_P-wetherbeei_contig6527.1.1 vs. uniprot
Match: D7G1V7_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V7_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 2.690e-41
Identity = 65/101 (64.36%), Postives = 81/101 (80.20%), Query Frame = 3
Query:  120 DRRVWTKEEDNGIKTLVAKYGTRSWSVIAEHIITDFNVHGRSGKQCRERWHNHLDPCINKNAWTEEEERVMAEAHRELGNRWSEIAKRLPGRTDNHVKNHW 422
            +RRVW++EED+ I+ LV ++GTRSW+ I EH+  D+++ GRSGKQCRERWHNHLDP I K  WT EEE ++ +   E+GNRWSEIAKRLPGRTDN VKN W
Sbjct:   16 NRRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFW 116          
BLAST of mRNA_P-wetherbeei_contig6527.1.1 vs. uniprot
Match: A0A835YH49_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH49_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.530e-40
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 3
Query:  123 RRVWTKEEDNGIKTLVAKYGTRSWSVIAEHIITDFNVHGRSGKQCRERWHNHLDPCINKNAWTEEEERVMAEAHRELGNRWSEIAKRLPGRTDNHVKNHW 422
            R+ WT  ED  I+ L  + G  +W+ +A+ +  D+ ++GR+ KQC ERWHNHL P I+K  WT EEE++MA+AH ELGN+WSEIAKRLPGRTDNHVKNHW
Sbjct:    4 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHW 103          
BLAST of mRNA_P-wetherbeei_contig6527.1.1 vs. uniprot
Match: A0A0V0Q997_PSEPJ (Homeodomain protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0Q997_PSEPJ)

HSP 1 Score: 152 bits (383), Expect = 5.920e-40
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 3
Query:  117 IDRRVWTKEEDNGIKTLVAKYGTRSWSVIAEHIITDFNVHGRSGKQCRERWHNHLDPCINKNAWTEEEERVMAEAHRELGNRWSEIAKRLPGRTDNHVKNHW 422
            IDRR WT EED  I  LV KYG + W+++A+ +  D+N+  RSGKQCRERWHNHLDP INK+ WTEEEE+V+ EAHR+ GN+W+EIAK LPGRTDN +KNH+
Sbjct:    7 IDRRAWTSEEDKAIIELVQKYGIKKWTIVAKKMQEDYNLKDRSGKQCRERWHNHLDPSINKSEWTEEEEKVIFEAHRQFGNKWAEIAKLLPGRTDNSIKNHF 108          
BLAST of mRNA_P-wetherbeei_contig6527.1.1 vs. uniprot
Match: A0A835ZB36_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB36_9STRA)

HSP 1 Score: 142 bits (359), Expect = 8.530e-40
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 3
Query:  123 RRVWTKEEDNGIKTLVAKYGTRSWSVIAEHIITDFNVHGRSGKQCRERWHNHLDPCINKNAWTEEEERVMAEAHRELGNR 362
            RRVWTKEED  I+ LV +YGTRSWSVIA+HI  DF++ GRSGKQCRERWHNHLDP INKNAWTEEEER+M+EAHR+LGNR
Sbjct:    1 RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHNHLDPHINKNAWTEEEERIMSEAHRQLGNR 80          
BLAST of mRNA_P-wetherbeei_contig6527.1.1 vs. uniprot
Match: D7FMG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG3_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 8.590e-40
Identity = 65/100 (65.00%), Postives = 84/100 (84.00%), Query Frame = 3
Query:  123 RRVWTKEEDNGIKTLVAKYGTRSWSVIAEHIITDFNVHGRSGKQCRERWHNHLDPCINKNAWTEEEERVMAEAHRELGNRWSEIAKRLPGRTDNHVKNHW 422
            RR WTK +DN ++ LVA +GT++W+V+ +++I+ + ++GRSGKQ RERWHNHL+P I KNAWT +EER+MAEA  +LGNRWSEIAK LPGRTDN VKNHW
Sbjct:   23 RRPWTKHDDNAVRELVATHGTKNWAVVEQNMISVYGIYGRSGKQSRERWHNHLNPSIKKNAWTPDEERIMAEARAKLGNRWSEIAKLLPGRTDNQVKNHW 122          
BLAST of mRNA_P-wetherbeei_contig6527.1.1 vs. uniprot
Match: A0A2R5FYY8_9STRA (Transcription factor MYB118 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.320e-39
Identity = 64/101 (63.37%), Postives = 82/101 (81.19%), Query Frame = 3
Query:  120 DRRVWTKEEDNGIKTLVAKYGTRSWSVIAEHIITDFNVHGRSGKQCRERWHNHLDPCINKNAWTEEEERVMAEAHRELGNRWSEIAKRLPGRTDNHVKNHW 422
            DRR W++ ED+ I+TLV ++GT+ WS IA  +I+D+ +  R+GKQCRERWHNHLDP I K+ WT EEE +MA+AH+ LGNRWSEI+K LPGRTDN +KNHW
Sbjct:   13 DRRAWSQREDDAIRTLVKEHGTKRWSTIATRLISDYRIDCRTGKQCRERWHNHLDPTIRKDPWTAEEEAIMAKAHQRLGNRWSEISKLLPGRTDNAIKNHW 113          
BLAST of mRNA_P-wetherbeei_contig6527.1.1 vs. uniprot
Match: D8LCF5_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF5_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 3.910e-39
Identity = 61/103 (59.22%), Postives = 82/103 (79.61%), Query Frame = 3
Query:  114 VIDRRVWTKEEDNGIKTLVAKYGTRSWSVIAEHIITDFNVH-GRSGKQCRERWHNHLDPCINKNAWTEEEERVMAEAHRELGNRWSEIAKRLPGRTDNHVKNH 419
            + +R++W+ EED+ ++ LV K+GT  W++IAE++  ++N + GRSGKQC ERWHNHLDP I K  W+EEEE  +++ HRELGNRW+EIAK LPGRTDN VKNH
Sbjct:   35 ISNRQIWSAEEDDAVRRLVEKFGTSGWTLIAENLALEYNNNQGRSGKQCWERWHNHLDPTIRKCEWSEEEEVTLSKQHRELGNRWAEIAKHLPGRTDNQVKNH 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6527.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1XJ32_9STRA5.180e-5782.18Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YL28_AURAN2.530e-5678.50Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0YL55_AURAN4.380e-5677.23Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
D7G1V7_ECTSI2.690e-4164.36Myb-like DNA-binding domain containing protein n=1... [more]
A0A835YH49_9STRA2.530e-4059.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A0V0Q997_PSEPJ5.920e-4064.71Homeodomain protein n=1 Tax=Pseudocohnilembus pers... [more]
A0A835ZB36_9STRA8.530e-4080.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
D7FMG3_ECTSI8.590e-4065.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5FYY8_9STRA1.320e-3963.37Transcription factor MYB118 n=1 Tax=Hondaea fermen... [more]
D8LCF5_ECTSI3.910e-3959.22Myb-like DNA-binding domain containing protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6527contigP-wetherbeei_contig6527:291..1127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009041171.1
PFAMsMyb_DNA-binding
Model size425
Max annot lvl2759|Eukaryota
KEGG koko:K09420,ko:K09422
KEGG Pathwayko04151,ko05166,map04151,map05166
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.28e-57
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
Cds size405
COG categoryADK
BRITEko00000,ko00001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186920.0658667-CDS-P-wetherbeei_contig6527:290..4331683186920.0658667-CDS-P-wetherbeei_contig6527:290..433Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6527 291..433 -
1683186920.0836818-CDS-P-wetherbeei_contig6527:696..8541683186920.0836818-CDS-P-wetherbeei_contig6527:696..854Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6527 697..854 -
1683186920.0943332-CDS-P-wetherbeei_contig6527:1003..11071683186920.0943332-CDS-P-wetherbeei_contig6527:1003..1107Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6527 1004..1107 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186920.110932-UTR-P-wetherbeei_contig6527:1107..11271683186920.110932-UTR-P-wetherbeei_contig6527:1107..1127Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6527 1108..1127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6527.1.1prot_P-wetherbeei_contig6527.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6527 291..1107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6527.1.1

>prot_P-wetherbeei_contig6527.1.1 ID=prot_P-wetherbeei_contig6527.1.1|Name=mRNA_P-wetherbeei_contig6527.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MEQPLMGPPAEAFAPNERDYPLPQYPPPMGAVIDRRVWTKEEDNGIKTLV
AKYGTRSWSVIAEHIITDFNVHGRSGKQCRERWHNHLDPCINKNAWTEEE
ERVMAEAHRELGNRWSEIAKRLPGRTDNHVKNHW*
back to top

mRNA from alignment at P-wetherbeei_contig6527:291..1127-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6527.1.1 ID=mRNA_P-wetherbeei_contig6527.1.1|Name=mRNA_P-wetherbeei_contig6527.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig6527:291..1127- (Phaeothamnion wetherbeei SAG_119_79)
TATTTGGGCAAGAGGGCGCGATGGAGCAGCCTCTCATGGGTCCACCGGCC GAGGCCTTCGCGCCAAACGAGAGAGATTACCCGCTGCCCCAATACCCGCC GCCAATGGGCGCCGTCATCGACCGGTGAGCAAGACAACCTCTCATTCGCC GACTCGCTTTCATGTCCGGAAACATCAAGAGAAAGTCCACGGATTCCTCC TCCTCCGCCTCGCTTATCGTTGACGCTATGCTGCTCTCCGCTGTTCGCCA CGCGCCGCCCGGCGCTGCTGCAGCCGCGTCTGGACGAAAGAGGAAGACAA TGGGATCAAGACACTCGTCGCGAAGTACGGCACGCGCAGCTGGTCCGTCA TCGCGGAGCACATCATCACCGACTTCAACGTCCACGGCCGCTCCGGCAAG CAGTGCCGCGAACGGTGGCACAACCATCTCGGTGAGTATTGGAGTCTTCA ACTCGACTCCCTCCCTAATCCCGTTCGCCGACGACCCAAAGATCTATTCT TGCCGCCGCCGCTCACCCCGTTTCTTTCTTAAACGCCGCTCTTAAGCGCC TCCATCGCCACGCGCCGCCGCCTGCCACATGCCGCCGCTGTCGCTGCTGC ACGCCGCTCTTGCCGTCACTGTCGCGTACCGCTGCCCCCGCCGCCTCCGC CGCCATCCGCCGCGGTCAAACTGACGCCCGCTCGGTCGCGCCAGACCCGT GCATCAACAAGAATGCGTGGACTGAAGAAGAGGAGCGCGTCATGGCCGAG GCGCACCGTGAGCTGGGCAACCGCTGGTCCGAGATCGCCAAGCGCCTGCC GGGTCGCACCGACAATCACGTTAAGAACCACTGGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6527:291..1127-

>mRNA_P-wetherbeei_contig6527.1.1 ID=mRNA_P-wetherbeei_contig6527.1.1|Name=mRNA_P-wetherbeei_contig6527.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig6527:291..1127- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCAGCCTCTCATGGGTCCACCGGCCGAGGCCTTCGCGCCAAACGA
GAGAGATTACCCGCTGCCCCAATACCCGCCGCCAATGGGCGCCGTCATCG
ACCGCCGCGTCTGGACGAAAGAGGAAGACAATGGGATCAAGACACTCGTC
GCGAAGTACGGCACGCGCAGCTGGTCCGTCATCGCGGAGCACATCATCAC
CGACTTCAACGTCCACGGCCGCTCCGGCAAGCAGTGCCGCGAACGGTGGC
ACAACCATCTCGACCCGTGCATCAACAAGAATGCGTGGACTGAAGAAGAG
GAGCGCGTCATGGCCGAGGCGCACCGTGAGCTGGGCAACCGCTGGTCCGA
GATCGCCAAGCGCCTGCCGGGTCGCACCGACAATCACGTTAAGAACCACT
GGTGA
back to top