mRNA_P-wetherbeei_contig6521.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6521.1.1
Unique NamemRNA_P-wetherbeei_contig6521.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6521.1.1 vs. uniprot
Match: A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.200e-12
Identity = 35/93 (37.63%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    1 QQARGLRVADKNLFGGGSSDPLVKLMVDGCDDQKTKVVKENLAPQWNESFDFFVVESSKSLELRVEDDDLTSNDFLGRVSVHMDELKHKQKAS 279
            ++ +GLR  D +L G  SSDP VKL  DG +  +T  V++NLAP+W+E F+F V + ++ LE+ V D D+  ++ +G   + +++L HK++ +
Sbjct:  227 RRGKGLRGLDVDLMGEASSDPFVKLTCDGVE-HRTTTVEKNLAPEWDEVFEFAVKDFTRRLEVEVLDADVVVDEAMGAFVIKLEDLLHKRRVT 318          
BLAST of mRNA_P-wetherbeei_contig6521.1.1 vs. uniprot
Match: UPI00189A0723 (extended synaptotagmin-3 n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI00189A0723)

HSP 1 Score: 66.2 bits (160), Expect = 1.230e-10
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 QARGLRVADKNLFG--GGSSDPLVKLMVDGCDDQKTKVVKENLAPQWNESFDFFVVES-SKSLELRVEDDDLTSNDFLGRVSVHMDELKHKQK 273
            +AR L   D  + G   G SDP VKL V G  + KTK +KENL P+WNE ++F V E+  + LE+ + D+D   +DFLGR ++ + E+K +++
Sbjct:  324 EARDLVAKDTYMMGLVKGKSDPYVKLRV-GNRNFKTKTIKENLHPKWNEVYEFVVHEAPGQELEMELYDEDTDKDDFLGRYNLDLGEVKREKE 415          
BLAST of mRNA_P-wetherbeei_contig6521.1.1 vs. uniprot
Match: A0A834BWP5_ORYME (Multiple C2 and transmembrane domain-containing protein 2 n=3 Tax=Oryzias TaxID=8089 RepID=A0A834BWP5_ORYME)

HSP 1 Score: 65.5 bits (158), Expect = 2.290e-10
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 QQARGLRVADKNLFGGGSSDPLVKLMVDGCDDQKTKVVKENLAPQWNESFDFFVVESSKSLELRVEDDDLTSNDFLGRVSVHMDELK 261
            ++ R L V D+     G+SDP VKL +DG    K+KVV ++L P WNESF   V + ++ L ++V D DLT++DF+G  SV + +L+
Sbjct:  196 KEGRNLVVRDRC----GTSDPYVKLKIDGKTFYKSKVVYKSLNPAWNESFHLPVKDLTQKLHIKVYDRDLTTDDFMGSASVLLSDLE 278          
BLAST of mRNA_P-wetherbeei_contig6521.1.1 vs. uniprot
Match: E7F9J5_DANRE (Multiple C2 domains, transmembrane 2b n=6 Tax=Danio rerio TaxID=7955 RepID=E7F9J5_DANRE)

HSP 1 Score: 65.1 bits (157), Expect = 3.100e-10
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   49 GSSDPLVKLMVDGCDDQKTKVVKENLAPQWNESFDFFVVESSKSLELRVEDDDLTSNDFLGRVSVHMDELK 261
            G+SDP VK+ +DG    K+KVV +NL P WNESF F +    +++ ++V D DLTS+DF+G  SV +D+L+
Sbjct:   70 GTSDPYVKVKLDGKMVYKSKVVLKNLNPVWNESFTFPIRSLEQTVFIKVFDRDLTSDDFMGSCSVGLDKLE 140          
BLAST of mRNA_P-wetherbeei_contig6521.1.1 vs. uniprot
Match: A0A2D4BI12_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BI12_PYTIN)

HSP 1 Score: 65.1 bits (157), Expect = 3.200e-10
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   46 GGSSDPLVKLMVDGCDDQKTKVVKENLAPQWNESFDFFVVESSKSLELRVEDDDLTSNDFLGRVSVHMDELK 261
            GG+SDPLVKL ++G   + ++  K  L PQWNE F FFV + + +L L VED D+T NDF+G+  V + +L+
Sbjct:  190 GGTSDPLVKLTLNGKKHETSRKDK-TLRPQWNEKFGFFVTDINTTLSLVVEDFDVTINDFMGQAKVDVSKLE 260          
BLAST of mRNA_P-wetherbeei_contig6521.1.1 vs. uniprot
Match: A0A3B3I539_ORYLA (Multiple C2 and transmembrane domain-containing protein 2 n=13 Tax=Oryzias latipes TaxID=8090 RepID=A0A3B3I539_ORYLA)

HSP 1 Score: 64.7 bits (156), Expect = 4.270e-10
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   49 GSSDPLVKLMVDGCDDQKTKVVKENLAPQWNESFDFFVVESSKSLELRVEDDDLTSNDFLGRVSVHMDELK 261
            G+SDP VKL VDG    K+KVV ++L P WNES    V + ++ L+++V D DLT++DF+G  SV + EL+
Sbjct:  199 GTSDPYVKLKVDGKTFYKSKVVYKSLNPVWNESISIPVRDLNQKLDIKVYDRDLTTDDFMGSASVLLSELE 269          
BLAST of mRNA_P-wetherbeei_contig6521.1.1 vs. uniprot
Match: UPI001FB6E2ED (extended synaptotagmin-3 n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB6E2ED)

HSP 1 Score: 64.3 bits (155), Expect = 5.830e-10
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    4 QARGLRVADKNLFG--GGSSDPLVKLMVDGCDDQKTKVVKENLAPQWNESFDFFVVES-SKSLELRVEDDDLTSNDFLGRVSVHMDELKHKQ 270
            +AR L   D  + G   G SDP V L V  C+  K+K +KENL P+WNE+++F + E+  + LEL V D+D   +DFLGR ++    +K ++
Sbjct:  318 EARNLLAKDTYMMGLVKGKSDPYVTLRVGNCN-FKSKTIKENLNPKWNEAYEFVIHEAPGQELELEVYDEDTDKDDFLGRYNLDFGVVKSEK 408          
BLAST of mRNA_P-wetherbeei_contig6521.1.1 vs. uniprot
Match: A0A2I4BSI6_9TELE (extended synaptotagmin-3-like n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4BSI6_9TELE)

HSP 1 Score: 64.3 bits (155), Expect = 5.830e-10
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 QARGLRVADKNLFG--GGSSDPLVKLMVDGCDDQKTKVVKENLAPQWNESFDFFVVES-SKSLELRVEDDDLTSNDFLGRVSVHMDELKHKQK 273
            +AR L   D  + G   G SDP VKL V G  + KTK +KENL P+WNE ++F V E+  + LE+ + D+D   +DFLG+ ++ + E+K +++
Sbjct:  324 EARDLVAKDTYMMGLVKGKSDPYVKLRV-GNRNFKTKTIKENLHPKWNEVYEFVVNEAPGQELEMELFDEDTDKDDFLGQYNLDLGEVKREKE 415          
BLAST of mRNA_P-wetherbeei_contig6521.1.1 vs. uniprot
Match: A0A3Q3BL47_KRYMA (Extended synaptotagmin-3-like n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3BL47_KRYMA)

HSP 1 Score: 63.9 bits (154), Expect = 7.960e-10
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 QARGLRVADKNLFG--GGSSDPLVKLMVDGCDDQKTKVVKENLAPQWNESFDFFVVES-SKSLELRVEDDDLTSNDFLGRVSVHMDELKHKQK 273
            +AR L   D  + G   G SDP VKL V G  + KTK +KENL P+WNE ++F V E+  + LE+ + D+D   +DFLGR ++ + ++K +++
Sbjct:  324 EARDLVAKDTYMMGLVKGKSDPYVKLRV-GNRNFKTKTIKENLHPKWNEVYEFVVHEAPGQELEMELFDEDTDKDDFLGRYNLDLGDVKMEKE 415          
BLAST of mRNA_P-wetherbeei_contig6521.1.1 vs. uniprot
Match: A0A3B4U3F3_SERDU (Extended synaptotagmin-3-like n=2 Tax=Seriola TaxID=8160 RepID=A0A3B4U3F3_SERDU)

HSP 1 Score: 63.9 bits (154), Expect = 7.960e-10
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 1
Query:    4 QARGLRVADKNLFG--GGSSDPLVKLMVDGCDDQKTKVVKENLAPQWNESFDFFVVES-SKSLELRVEDDDLTSNDFLGRVSVHMDELKHKQK 273
            +AR L   D  + G   G SDP  KL V G  + K+K VKENL P+WNE ++F V E+  + LEL + D+D   +DFLGR ++   E+K +++
Sbjct:  319 EARDLLAKDTYMMGLVKGKSDPYAKLRV-GNRNIKSKTVKENLHPKWNEVYEFVVHEAPGQELELELYDEDTDKDDFLGRYNLDFGEVKREKE 410          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6521.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL55_9PHAE2.200e-1237.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00189A07231.230e-1041.94extended synaptotagmin-3 n=1 Tax=Nematolebias whit... [more]
A0A834BWP5_ORYME2.290e-1042.53Multiple C2 and transmembrane domain-containing pr... [more]
E7F9J5_DANRE3.100e-1047.89Multiple C2 domains, transmembrane 2b n=6 Tax=Dani... [more]
A0A2D4BI12_PYTIN3.200e-1047.22Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A3B3I539_ORYLA4.270e-1047.89Multiple C2 and transmembrane domain-containing pr... [more]
UPI001FB6E2ED5.830e-1040.22extended synaptotagmin-3 n=1 Tax=Mugil cephalus Ta... [more]
A0A2I4BSI6_9TELE5.830e-1040.86extended synaptotagmin-3-like n=1 Tax=Austrofundul... [more]
A0A3Q3BL47_KRYMA7.960e-1040.86Extended synaptotagmin-3-like n=1 Tax=Kryptolebias... [more]
A0A3B4U3F3_SERDU7.960e-1041.94Extended synaptotagmin-3-like n=2 Tax=Seriola TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6521contigP-wetherbeei_contig6521:3117..3398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LF87
PFAMsC2
Model size282
Max annot lvl2759|Eukaryota
KEGG koko:K19949,ko:K22125,ko:K22127
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.96e-12
EggNOG OGsKOG1030@1|root,KOG1326@1|root,KOG1030@2759|Eukaryota,KOG1326@2759|Eukaryota
Descriptionplasma membrane repair
Cds size282
COG categoryS
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186919.8075085-CDS-P-wetherbeei_contig6521:3116..33981683186919.8075085-CDS-P-wetherbeei_contig6521:3116..3398Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6521 3117..3398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6521.1.1prot_P-wetherbeei_contig6521.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6521 3117..3398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6521.1.1

>prot_P-wetherbeei_contig6521.1.1 ID=prot_P-wetherbeei_contig6521.1.1|Name=mRNA_P-wetherbeei_contig6521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
QQARGLRVADKNLFGGGSSDPLVKLMVDGCDDQKTKVVKENLAPQWNESF
DFFVVESSKSLELRVEDDDLTSNDFLGRVSVHMDELKHKQKAS*
back to top

mRNA from alignment at P-wetherbeei_contig6521:3117..3398-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6521.1.1 ID=mRNA_P-wetherbeei_contig6521.1.1|Name=mRNA_P-wetherbeei_contig6521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig6521:3117..3398- (Phaeothamnion wetherbeei SAG_119_79)
CAACAGGCCCGCGGGCTGCGAGTGGCGGACAAGAACCTCTTTGGCGGCGG CAGCAGCGACCCGCTGGTGAAGCTCATGGTGGACGGCTGCGACGATCAGA AGACCAAGGTGGTCAAGGAGAACCTCGCGCCGCAGTGGAACGAGTCGTTC GACTTCTTCGTGGTCGAGTCGTCCAAATCGCTCGAGCTGCGTGTCGAGGA CGATGATTTGACGAGCAATGACTTTTTGGGGCGCGTCTCCGTCCACATGG ACGAGCTCAAGCACAAGCAGAAGGCGAGTTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6521:3117..3398-

>mRNA_P-wetherbeei_contig6521.1.1 ID=mRNA_P-wetherbeei_contig6521.1.1|Name=mRNA_P-wetherbeei_contig6521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig6521:3117..3398- (Phaeothamnion wetherbeei SAG_119_79)
CAACAGGCCCGCGGGCTGCGAGTGGCGGACAAGAACCTCTTTGGCGGCGG
CAGCAGCGACCCGCTGGTGAAGCTCATGGTGGACGGCTGCGACGATCAGA
AGACCAAGGTGGTCAAGGAGAACCTCGCGCCGCAGTGGAACGAGTCGTTC
GACTTCTTCGTGGTCGAGTCGTCCAAATCGCTCGAGCTGCGTGTCGAGGA
CGATGATTTGACGAGCAATGACTTTTTGGGGCGCGTCTCCGTCCACATGG
ACGAGCTCAAGCACAAGCAGAAGGCGAGTTAA
back to top