mRNA_P-wetherbeei_contig6517.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6517.1.2 vs. uniprot
Match: A0A6H5JRH3_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH3_9PHAE) HSP 1 Score: 192 bits (489), Expect = 3.520e-50 Identity = 167/492 (33.94%), Postives = 227/492 (46.14%), Query Frame = 2
Query: 2 SEMVVDSTGYIVAKGARALRGLTLWGKIQNLFSDEPLAPHAEGWRVSAAAASYESKNKGXXXXXXXXXXXXXXXXXXXXXXXXXXAAEGFICPECRRGFPSAEDLLGHHAAAHR----DDDVNSDGXXXXDGGRGDGDGRTQXXXXXXXXXXXXQAVAGGQADGSGDGGPTRRSSWAHGRAELLENAAASRANSSGGGGTSGSFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRQSRLQEQRAVLRAQSEYVDALLPAVTELHGLGVGIGHAIDGQAELAERLAAKTDAVGDKTAFVTRQASRLNRGARKAKAAHERDVALQEVSTGLFLTVAGEEAALVARRPSNVCRWRAHRRQTAGGIWGFQSAVSGLWLGQGPFGGLKVRGKAFKNWEEVQCDLNASTTRLIVCSADWGKGGYV---------------------CRGAARGDDGGGGVA----LTVADAGIKAKERAAVFRVVDFEGYADSPF 1390
SEMV+DST Y + + AR LRG+T WGKI+N FS++P P A A+ N AEGFICP+CR FP+++ L+ HH AH DDD ++ G G G G TQ XXXXXX G GGP + + L G G SG +G XXXX + EQ+AV+ +Q Y+D++ AV EL LG IG ++DGQ +R+A K+ D+TAFVTR+A+R + ++ +ALQEV+TGL+L V GEE L R NVCR+ A RQ GI G +S+V+ WLGQ G L+V G +F E Q DL T ++ CSA+WG GGY+ G ++ ++G A L++ DA + + RAAVFR+V+ +GY PF
Sbjct: 123 SEMVLDSTRYAIERSARVLRGMTFWGKIRNAFSNDPEVPQQPAGNTRAGTATGNGGN---------------------GNYDPDVPAEGFICPDCRGLFPTSDALVAHHGLAHTIASADDDEDARGW-------GAGGGATQYGXXXXXX----------DVSGGSHGGPIPEPGSSTSLKDQLFG---------GREGWSGQRAGGAERKXXXXGV------------------------IAEQKAVMASQDAYLDSVGQAVKELGLLGRNIGESLDGQGATLDRVAEKSSEANDRTAFVTRKAARQAQSSKPNNPTFVMSLALQEVTTGLYLAVTGEEVVLQGRELRNVCRFEAWERQH--GIMGLKSSVTRKWLGQTFLGYLRVSGSSFGKNHEWQADLRGKETTMVCCSANWGAGGYLSSRPNGTSIRMGDTTLEGSTAASGGSKTNNGRDSAAEMAELSLVDATLANRPRAAVFRLVNCDGYTPQPF 541
BLAST of mRNA_P-wetherbeei_contig6517.1.2 vs. uniprot
Match: A0A835YH57_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH57_9STRA) HSP 1 Score: 149 bits (375), Expect = 2.810e-35 Identity = 147/506 (29.05%), Postives = 203/506 (40.12%), Query Frame = 2
Query: 2 SEMVVDSTGYIVAKGARALRGLTLWGKIQNLFSDEPLAPHAEGWRVSAAAASYESKNKGXXXXXXXXXXXXXXXXXXXXXXXXXXAAEGFICPECRRGFPSAEDLLGHHAAAHRDDDVNSDGXXXXDGGRGDGDGRTQXXXXXXXXXXXXQAVAGGQADGS--GDGGPTRRSSWAHGRAELLENAAASRANSSGGGGTSGSFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRQSRLQEQRAVLRAQSE--------------------------YVDALLPAVT-ELHGLGVGIGHAIDGQAELAERLAAKTDAVGDKTAFVTRQASRLNRGARKAKAAHERDVALQEVSTGLFLTVAGEEAALVARRPSNVCRWRAHRRQTAGGIWGFQSAVSGLWLGQGPFGGLKVRGKAFKNWEEVQCDLNA-----STTRLIVCSADWGKGGYVCRGAARGDDGGGGVALTVADAGIKAKERAAVFRVVDF--EGYADSPFPTAPLVQ 1411
S MVVDST Y++ K AR +RG+T+WG++QN FSDEP A +S + +S EG+ICPECR SA+DLL H A+ H N+ +G R + G+AD G G +RSS N A +R NS G G QEQR ++R+Q Y+D L V +L + +G ++ Q + L D D+ VTRQA+++ R K VAL ++G +L G E L R+ NVC W H T+GGI GF+S VSGLWLG G GG++ FK+WE+ QCD A + RLI C+ WGKG YV + A G L++A + K AAVF++V + + SP+ +AP +Q
Sbjct: 58 SAMVVDSTQYLLDKSARVIRGMTMWGRMQNFFSDEPAPVLAASTPISNSTSS-------------------------------SAGMEGYICPECRMRCASADDLLAHFASLHEALHGNAHAEEPATISSREGAARNELF---------------GEADKGRPGQGAWEQRSSTG-----CSANGADNRRNSGGSG----------------------------------------SGLAQEQRNIMRSQQAMFVTSITLILTSAIAFICGGPPPEQAYIDTLSSTVLPQLQHVTQSLGTSLAEQEHTLDYLHDGADKASDRALAVTRQAAKMTR----LKPTASGTVALLHCTSGAYLAAVGSEVTLKQRQIRNVCLWERH--STSGGICGFKSGVSGLWLGVGMLGGIQCSAATFKSWEQWQCDALAPGDPDESVRLICCAGGWGKGSYV-KVDAEGQ-------LSLAKCCPENKAEAAVFKLVSIREDQFRASPYVSAPRLQ 458
BLAST of mRNA_P-wetherbeei_contig6517.1.2 vs. uniprot
Match: A0A024FYP5_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FYP5_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 5.170e-15 Identity = 59/170 (34.71%), Postives = 90/170 (52.94%), Query Frame = 2
Query: 752 YVDALLPAVTELHGLGVGIGHAIDGQAELAERLAAKTDAVGDKTAFVTRQASRLNRGARKAKAAHERDVALQEVSTGLFLTVAGEEAALVARRPSNVCRWRAHRRQTAGGIWGFQSAVSGLWLGQGPFGGLKVRGKAFKNWEEVQCDLNASTTRLIVCSADWGKGGYVCR 1261
Y+ AL P++ EL + +G+A+D Q + +R+ K D D V Q+ RL G++ + ALQE+ST FL G E L A S+ C +RA + +WGFQS +SG +LG FG LKV+ K++E+ +L+ STT L ++ GG++ R
Sbjct: 214 YLSALAPSLEELKHASLAMGYALDTQNKQLDRIDDKVDRTNDDMRIVALQSKRLL-GSKTDHPIYSFRCALQELSTKAFLQDVGGEPLLSADVISDGCTFRAFSVDSEINVWGFQSELSGAFLGVNRFGYLKVKALELKSYEQFIMNLDQSTTTLFCTASYMWTGGWIFR 382
BLAST of mRNA_P-wetherbeei_contig6517.1.2 vs. uniprot
Match: F0W8Z8_9STRA (Uncharacterized protein AlNc14C37G3268 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W8Z8_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.910e-14 Identity = 56/170 (32.94%), Postives = 86/170 (50.59%), Query Frame = 2
Query: 752 YVDALLPAVTELHGLGVGIGHAIDGQAELAERLAAKTDAVGDKTAFVTRQASRLNRGARKAKAAHERDVALQEVSTGLFLTVAGEEAALVARRPSNVCRWRAHRRQTAGGIWGFQSAVSGLWLGQGPFGGLKVRGKAFKNWEEVQCDLNASTTRLIVCSADWGKGGYVCR 1261
Y+ AL P++ EL + +G+A+D Q + +R+ K D D+ V Q+ RL G + + ALQE ST F+ E L A S C +RA T +WGFQS +SG +LG FG LK++ K++E+ +L+ TT L ++ GG++ R
Sbjct: 162 YLSALEPSLKELKQASLAMGYALDTQNKQLDRIDDKVDRANDEMRIVALQSKRLL-GPKSGHPMYSFRCALQEFSTKSFMKDVRGEPLLSANVISEGCTYRAFSVDTENNVWGFQSELSGAFLGVNRFGYLKIKAPELKSYEQFIVNLDQPTTTLFCTASYMWTGGWISR 330
BLAST of mRNA_P-wetherbeei_contig6517.1.2 vs. uniprot
Match: D8LT98_ECTSI (Conserved C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT98_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 6.780e-7 Identity = 44/129 (34.11%), Postives = 61/129 (47.29%), Query Frame = 2
Query: 1079 GIWGFQSAVSGLWLGQGPFGGLKVRGKAFKNWEEVQCDLNASTTRLIVCSADWGKGGYVC------------------RGAARGDDGGGG-------VALTVADAGIKAKERAAVFRVVDFEGYADSPF 1390
GI G +S V+ WLGQ G L+V G +F E Q DL T ++ CSA+WG GGY+ A+ G+ G L++ DA + + RAAVFR+V+ +GY PF
Sbjct: 343 GIIGLKSGVTRKWLGQTFLGYLRVSGSSFGKNHEWQADLRRKETTMVCCSANWGAGGYLSVRPSGTSIRNGDTTLEGPTAASGGNTNNCGRDSAAEMAELSLVDATLANRPRAAVFRLVNCDGYTPQPF 471 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6517.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6517.1.2 >prot_P-wetherbeei_contig6517.1.2 ID=prot_P-wetherbeei_contig6517.1.2|Name=mRNA_P-wetherbeei_contig6517.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=535bp MVVDSTGYIVAKGARALRGLTLWGKIQNLFSDEPLAPHAEGWRVSAAAASback to top mRNA from alignment at P-wetherbeei_contig6517:3..2683+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6517.1.2 ID=mRNA_P-wetherbeei_contig6517.1.2|Name=mRNA_P-wetherbeei_contig6517.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2681bp|location=Sequence derived from alignment at P-wetherbeei_contig6517:3..2683+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6517:3..2683+ >mRNA_P-wetherbeei_contig6517.1.2 ID=mRNA_P-wetherbeei_contig6517.1.2|Name=mRNA_P-wetherbeei_contig6517.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1605bp|location=Sequence derived from alignment at P-wetherbeei_contig6517:3..2683+ (Phaeothamnion wetherbeei SAG_119_79)back to top |