mRNA_P-wetherbeei_contig651.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig651.2.1
Unique NamemRNA_P-wetherbeei_contig651.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig651.2.1 vs. uniprot
Match: A0A7S2Y004_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y004_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.080e-32
Identity = 84/214 (39.25%), Postives = 118/214 (55.14%), Query Frame = 3 
Query:   36 MASNEGGSSDADLARKLQQEELAASRARPVAYAGFQATGGTSPATYYQNAYQAADFAEAGT-YAVHQSYTAVPPPTQVFVGEHERRMMDCFSLGRGIKLLALIDGCFLLIQMLMYGYLSLFFWGPVAGYLAASRFDERWARVYLAYYACRIIGDAILLAGGLWAFFLSLMIDCFIARFVYIFFKLLTRCSPEELLQLRSPGSVWSSANPYFVIF 674
            +A  E  S D +LA KLQQEE+  + + PV                  +A QAA   + G    V+ +   +  P  V +G  E+R+++ FSLGRGI+ +AL+D   LL   L++    +F WGP+ GY A   F   ++ +YL YYA +I  D   +  G W FFL L+ID +IARFVY F  +L +CS  EL Q+R P  VW+ A PYF+IF
Sbjct:   23 VAVAESTSHDEELAYKLQQEEMVGAHSVPV------------------HAVQAAQAEQWGDGLMVYGTAPLLGHP--VVLGAQEQRILETFSLGRGIRCIALLDSVILLFDCLLFPIFFVFVWGPICGYFAGQDFRAFYSYLYLLYYAVKITADIAFILFGAWWFFLVLLIDLWIARFVYAFAVMLGQCSDAELEQMREPSPVWNRARPYFIIF 216
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BLAST of mRNA_P-wetherbeei_contig651.2.1 vs. uniprot
Match: A0A6V1TFA5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TFA5_HETAK)

HSP 1 Score: 121 bits (304), Expect = 6.160e-28
Identity = 73/206 (35.44%), Postives = 110/206 (53.40%), Query Frame = 3 
Query:   63 DADLARKLQQEELAASRARPVAYAGFQATGGTSPATYYQNAYQAADFAEAGTYAVHQSYTAVPPPTQ--VFVGEHERRMMDCFSLGRGIKLLALIDGCFLLIQMLMYGYLSLFFWGPVAGYLAASRFDERWARVYLAYYACRIIGDAILLAGGLWAFFLSLMIDCFIARFVYIFFKLLTRCSPEELLQLRSPGSVWSSANPYFVIF 674
            D   A KLQQEE+  + + PV                Y +  Q +   E G   +  +   +P P    + +G+HERR+++ +SLGRG++++ALIDG  LL   L++    +  WGP+AGYL +S F   +   Y  YY  ++  D I +  G W F   L+ID +IAR+VY+   LL   +P EL  LR+P  +WS A  +F+IF
Sbjct:   40 DEGFAYKLQQEEMVGAHSVPV----------------YASHAQDSQALEEGLAVLAGTAPLLPGPQAEGMALGDHERRLLETYSLGRGVRVIALIDGMILLFDCLLFPVFFVLMWGPLAGYLGSSYFRFSFVTCYFLYYVLKMAADIIFILYGAWWFLAVLVIDLWIARWVYMLAALLWVANPAELEALRAPSHMWSRARQFFIIF 229
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig651.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2Y004_9STRA1.080e-3239.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1TFA5_HETAK6.160e-2835.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig651contigP-wetherbeei_contig651:1389..4458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1634
Hectar predicted targeting categoryother localisation
Exons7
Cds size642
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig651.2.1prot_P-wetherbeei_contig651.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig651 2346..4423 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186918.9450974-UTR-P-wetherbeei_contig651:1388..23451683186918.9450974-UTR-P-wetherbeei_contig651:1388..2345Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig651 1389..2345 -
1683186919.0286822-UTR-P-wetherbeei_contig651:4423..44581683186919.0286822-UTR-P-wetherbeei_contig651:4423..4458Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig651 4424..4458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186918.956608-CDS-P-wetherbeei_contig651:2345..24271683186918.956608-CDS-P-wetherbeei_contig651:2345..2427Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig651 2346..2427 -
1683186918.9682834-CDS-P-wetherbeei_contig651:2648..27231683186918.9682834-CDS-P-wetherbeei_contig651:2648..2723Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig651 2649..2723 -
1683186918.9782727-CDS-P-wetherbeei_contig651:2972..30591683186918.9782727-CDS-P-wetherbeei_contig651:2972..3059Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig651 2973..3059 -
1683186918.987929-CDS-P-wetherbeei_contig651:3212..32661683186918.987929-CDS-P-wetherbeei_contig651:3212..3266Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig651 3213..3266 -
1683186919.0020423-CDS-P-wetherbeei_contig651:3597..37131683186919.0020423-CDS-P-wetherbeei_contig651:3597..3713Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig651 3598..3713 -
1683186919.011166-CDS-P-wetherbeei_contig651:3989..41571683186919.011166-CDS-P-wetherbeei_contig651:3989..4157Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig651 3990..4157 -
1683186919.0198565-CDS-P-wetherbeei_contig651:4363..44231683186919.0198565-CDS-P-wetherbeei_contig651:4363..4423Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig651 4364..4423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig651.2.1

>prot_P-wetherbeei_contig651.2.1 ID=prot_P-wetherbeei_contig651.2.1|Name=mRNA_P-wetherbeei_contig651.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=214bp
MASNEGGSSDADLARKLQQEELAASRARPVAYAGFQATGGTSPATYYQNA
YQAADFAEAGTYAVHQSYTAVPPPTQVFVGEHERRMMDCFSLGRGIKLLA
LIDGCFLLIQMLMYGYLSLFFWGPVAGYLAASRFDERWARVYLAYYACRI
IGDAILLAGGLWAFFLSLMIDCFIARFVYIFFKLLTRCSPEELLQLRSPG
SVWSSANPYFVIF*
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mRNA from alignment at P-wetherbeei_contig651:1389..4458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig651.2.1 ID=mRNA_P-wetherbeei_contig651.2.1|Name=mRNA_P-wetherbeei_contig651.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3070bp|location=Sequence derived from alignment at P-wetherbeei_contig651:1389..4458- (Phaeothamnion wetherbeei SAG_119_79)
GGAAAAGGGTATGTAAAAGAAAAGAACAAGACAAAATGGCCTCCAACGAA
GGAGGAAGCTCCGACGCAGACCTGGCGCGAAAGCTGCAGCAGGAGGTCAG
TTGTACAAAAGTATCTTTTCGTTTTTTTCTGTTTCCCTTCCCTCTTTTCT
CTCTCTCTTTCTAATCTGTGGCTCTTAGAACGGATGGCAGCGACGGCGTT
GTCCGTATGCTCTTTGCGAACTATCTGTCGTTACTTCTTTCGAGGAGCCT
AAAAGCGAAAAGTCCGCTGTACAAACCCACTTTTCTCGCTCTGCCCCGCA
GGAGCTGGCCGCGTCGCGCGCACGACCAGTCGCCTACGCTGGCTTCCAAG
CGACAGGCGGAACCTCTCCAGCGACCTACTATCAGAATGCGTATCAAGCG
GCCGACTTCGCGGAGGCCGGAACCTATGCGGTGCATCAGTCATACACGGC
GGTCCCACCACCGACCCAGGTGAGCGAGGCGTTGCGGATCATAAAGTTTT
GCTCTTTTCTCTCCTGTTATTCCATTGCCAACCAAAAAAGAACTTGTGGA
GTGTCGCGCCGCCGTGCGATGTGCCTGATACCTCCATCGGCTTGTTTCCC
CGGCCACCAAACCACGATAGAATCTTAAATCTGCCATGCCTTGCGAAATT
CCGCACGAAAACTTGCGGCTGCGCGCCTGTTGGGCCAAACTTCCCTCTCA
TAACCGAACCGGAACTGACGGAACCAACGCAACTGAACCATTCAGGTGTT
TGTGGGGGAGCACGAGCGGCGGATGATGGACTGCTTCAGCCTGGGGCGCG
GTATCAAGCTGCTGGCCCTCATCGACGGCTGCTTCCTGCTGATCCAGATG
CTTATGTACGGGTGCGTCTGTCACCGGTTCTCACCGAGGAAAAGATGAAT
GAAGGCTTTCGAGACGGTTTTCAGAATGGGAAGGGTAGTGCTTGGTGTTA
GACCTCCGGAGTTATCCGGTTGGAGAACAATCCCGACTTGTCGCTCTCTG
GCATGCTTTGTGGGGGGCCTGGCCACTGTGCTTTTCTCTCGTTTCGCCTG
AAGAGCGGCAGGAAAGCCATTACGGACGTAAGCGCGCTACAGCGAGGTCC
TCTCGTGTGGCGGCCGCGGCCGTCTCCGGCTGTAAAGACTTGCTTTCTGA
TCTCTGGGGCTCAACCTCTCCATCCGCCTCCCGATCCGGCAGGTACCTTT
CGCTGTTCTTCTGGGGGCCCGTCGCCGGGTATCTGGCGGCGTCAAGGTGC
GTTGGAAGGCTTTGCTGACTCGGTGTCCTGCATCGCTTTTTCAGTGGCGG
CACCCTTGTTCCCTCTTCCTTTGGTTTCGATCGCAGGTTTCTTTTTTGTG
GTGAGAAAGTCGGATGATTCTTTAAAGTCTCCTACTACTCTGCTGGCAGG
TTCGACGAGCGATGGGCGAGGGTCTACCTGGCATACTACGCCTGTCGAAT
CATCGGCGACGCCATTCTCCTCGCGGGCGGGCTCTGGTGAGTGAGAGAAG
GGTTCCAGATTTTGCTGCTAGAGGGAAAGGGCGAGGCGGGAGGTTAAGGG
CAGCGGGGAGGAGGCTTGTGGCGGCGACGGCAGCGGCGCGCGCTCGGAGA
GGCTTCGGGTCAGATGCATGTTTGCCTTGTTCTTTTTGCGCGTTTTCGGA
TGCTGCCTGCCCGGGCCTGTTTTGTTTTTCCCTAACATTGTGCTGAATTC
TTGAAAAGTGCGTCCCGAATACCCGGAACGTGCAGGGCATTCTTCCTGTC
GCTGATGATCGACTGTTTCATTGCACGCTTTGTCTACATCTTCTTCAAGC
TCTTAACACGGTAAGCGCTGGGCAAGCTGTCTAAGGGAAATGGCATGTTG
TTGGCAGCCCGTTTGTTTGTCTTAACAGTTAGCCAAAGGCAAATCGGAGG
AGAAATCAGTCACTGGACCATCGCTCCACAAAGCAACACTTGCATGTATA
TGCCGTGATCGCTGCCCCACGGCCTACCGCCGTCGCCGCCGCCGCCACCG
TCTGCCCGCCCCCACCACGCCGCCGGAGCAGGTGCTCGCCGGAGGAGTTG
CTGCAGCTGCGATCGCCGGGCTCCGTGTGGAGCAGCGCAAATCCGTACTT
TGTCATCTTCTGACAGAAACCTGGAACCGGCGGCGGCGGCCTGCTGACAG
GGGTAGCTGCTGCGGCGGCAGCCGCTTCGGTGGTGGCGGCAGTTGGTTGA
CCGCCGCATTCCTGTGCCGCCAGCGACGGAGCTCCGCCGGTTTCACCGCC
GTGGCAGCGCATCTAGCAGCTCCGCCGGCTCTTGCTGGCGTCGTCGTCAT
CCGCTGACTGTGGGAGCCACATAGCAGCGTCTTGGCGAAGCATGCGGGGA
AAAACACGCCCACTGCATCAGGACCGCTTCAGCCGTCTGATCGTCAAAGC
GGCGATGCTGGCGGCGGCCTGCCTGTTCGGTGGCGGCGTTCGAAGGTGGG
AGCGGCGGCCCTGGTTCCCGCGGCCATGGAAGAGGACCGGCTGGCAGTGA
CAGCAGCCTCTGCTGCCGGCGTGCGACGCGGGCATCCAGCTCCGCTGGCG
GGACGTTCAGCGGCGGGCGGAACTGCTGGGCTGGTGCGCCGACGACGATC
AGGTCAGAAGGAATGAAATGATTGGTTTGAAAAAGGCAATGGCGGGAAGC
GAGGAGAGAGGAAGTCTGAAATATGGGGAGGGGGGGCACCGTCTGTGGCC
CCCGAATAATCGCGGCCTACCGGGTCACCGGCTTTAGGCAACAGCGGCAG
TGACGGCTGCGGTCAAAGGCGGTAAGGACTGGAATGAAACGAGACAGGCA
GCAGTGAGGTGCGAGGAATGACGGGAAATGCAAATAGACTGTGGGGGAAG
GGGACAAACGGGCAAACCGCCTCATCACAGCCCTGGTAATTCTGTTGGAC
GGAAGTGGAAATGGGATCGGTCTTCTGCGCATCTGTTTCATCTGAGCTTT
TTGTGAGGCCGGGCATAGTCACTTTTTAAAAGTCAAGTACGGCATTTTCG
TAACATTGTTTTTCTTTCAATCGGCATTCTGCTGCTGGCTGCTTCACGGA
CTACTTTTGCTGCCCAAGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig651:1389..4458-

>mRNA_P-wetherbeei_contig651.2.1 ID=mRNA_P-wetherbeei_contig651.2.1|Name=mRNA_P-wetherbeei_contig651.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=642bp|location=Sequence derived from alignment at P-wetherbeei_contig651:1389..4458- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTCCAACGAAGGAGGAAGCTCCGACGCAGACCTGGCGCGAAAGCT
GCAGCAGGAGGAGCTGGCCGCGTCGCGCGCACGACCAGTCGCCTACGCTG
GCTTCCAAGCGACAGGCGGAACCTCTCCAGCGACCTACTATCAGAATGCG
TATCAAGCGGCCGACTTCGCGGAGGCCGGAACCTATGCGGTGCATCAGTC
ATACACGGCGGTCCCACCACCGACCCAGGTGTTTGTGGGGGAGCACGAGC
GGCGGATGATGGACTGCTTCAGCCTGGGGCGCGGTATCAAGCTGCTGGCC
CTCATCGACGGCTGCTTCCTGCTGATCCAGATGCTTATGTACGGGTACCT
TTCGCTGTTCTTCTGGGGGCCCGTCGCCGGGTATCTGGCGGCGTCAAGGT
TCGACGAGCGATGGGCGAGGGTCTACCTGGCATACTACGCCTGTCGAATC
ATCGGCGACGCCATTCTCCTCGCGGGCGGGCTCTGGGCATTCTTCCTGTC
GCTGATGATCGACTGTTTCATTGCACGCTTTGTCTACATCTTCTTCAAGC
TCTTAACACGGTGCTCGCCGGAGGAGTTGCTGCAGCTGCGATCGCCGGGC
TCCGTGTGGAGCAGCGCAAATCCGTACTTTGTCATCTTCTGA
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