mRNA_P-wetherbeei_contig6503.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6503.1.1
Unique NamemRNA_P-wetherbeei_contig6503.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6503.1.1 vs. uniprot
Match: D8LMJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ1_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.520e-44
Identity = 223/455 (49.01%), Postives = 284/455 (62.42%), Query Frame = 1 
Query:    4 KQLDFDTGTYFYRDAQNGQTFWDKPIKSKIVPVPASLPENPE---DNRKHARRARERNARLRAIALKRQIWDQQKKXXXXXXXXXXXXXVEGLWKEAERLAVLNGGEFNMSWQELGSIHLC-LFDF-EKRLGTKLVSLRLVGHSLTELPSAVGERCRSLTSLSLCANRLTVLPDSLCDLAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTELSHQVILDCNRLRQLPETLGLMQCKVLNVSXXXXXXXXHCIKAMRRLRRLLADDNGLQHLPSDIGESPSLTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHMVYPTAEVLAGGAEKVRQWCECRQRERARARRHTVVIAFQDILSQVASLELGPPQFFEADVAADIDHAANLYYAVVWEKFWEVILPRLELAWQAGAATPEAA 1353
            K +D +TG +FY +   G+  WD+P++  + P+    P   E   D+ +H R+  ER +R + +A++R  +D+                V+GLW EAE+ A    G+F+++W+++ S+    +F F E+  GTK+V+LRLVG  LTE+P A+G+   SL SLSL +N L  +PD LCDL ALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     G M+C+ LNVS        HC+K M RL ++ A                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    MVYP  EV+  G ++VR WC  R  +R  AR+HT+V+A QDIL Q+    LG P FFE DV   ++   + +YA+V+E+FW+ +LP LE  WQ G A P  A
Sbjct:   34 KHVDPETGYWFYENLATGERHWDRPLEG-VAPLRPKSPRPDEKLVDDARHKRQRSERESRRKDMAIRRVQFDKLLLEEGKSAEIKEAERVQGLWDEAEQHAARKEGDFSLAWKQVPSVSESHIFGFPERNGGTKIVNLRLVGLGLTEVPGAIGQNLLSLKSLSLSSNALEEIPDGLCDLTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GRMKCRWLNVSNNKLAGLPHCLKDMPRLTKISAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-NDMVYPPKEVILQGCDRVRAWCYRRMHDRVIARQHTIVMAVQDILKQIHERGLGHPAFFEPDVEVGMNEGTDHFYALVYERFWDTMLPALEREWQTGTAAPRGA 485
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BLAST of mRNA_P-wetherbeei_contig6503.1.1 vs. uniprot
Match: A0A6H5KAI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.140e-21
Identity = 111/185 (60.00%), Postives = 134/185 (72.43%), Query Frame = 1 
Query:  799 MRRLRRLLADDNGLQHLPSDIGESPSLTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHMVYPTAEVLAGGAEKVRQWCECRQRERARARRHTVVIAFQDILSQVASLELGPPQFFEADVAADIDHAANLYYAVVWEKFWEVILPRLELAWQAGAATPEAA 1353
            M RL ++ A +NGL+ LPSDIG+S SLTA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    MVYP  E++  G ++VR WC  R  +R  AR+HT+V+  QDIL Q+    LG P FFE DV   ++   + +YA+V+E+FW+ +LP LE  WQ G A P  A
Sbjct:    1 MPRLTKISAVNNGLRSLPSDIGDSRSLTALHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-NDMVYPPKEIILQGCDRVRAWCHRRMHDRVSARQHTIVMTVQDILKQIHERGLGHPAFFEPDVEVGMNEGTDHFYALVYERFWDTMLPALEREWQTGTAVPRGA 184
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BLAST of mRNA_P-wetherbeei_contig6503.1.1 vs. uniprot
Match: A0A7S4A2F7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A2F7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.940e-12
Identity = 127/373 (34.05%), Postives = 159/373 (42.63%), Query Frame = 1 
Query:  274 WKEAERLAVLNGGEFNMSWQELGSIHLCLFDFEKRLGTKLVSLRLVGHSLTELPSAVGERCRSLTSLSLCANRLTVLPDSLCDLAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTELSHQVILDCNRLRQLPETLGLMQCKVLNVSXXXXXXXXHCIKAMRRLRRLLADD-----------------------NGLQHLPSDIGESPSLTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHMVYPTAEVLAGGAEKVRQWCECRQRERARARRHTVVIAFQDILSQVASLELGPPQFFEADVAADIDHAANLYYAVVWEKFWEVILPRLELAW 1323
            W +A   A    GE NM  +  G     ++DF +  G  L +LR V H L   P   G+    LT L+L +NRLT LPDS+CDLA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    L  M C  L+ +         C+  M  L  L                           N ++ LP  I   P L +                                                      M YPT + L  GAE VR W   RQ++   AR+H VV   QD + Q    E+ P    +    A ++ +  +++ VVW+KFW+ +LP L  AW
Sbjct:  206 WGDAFEFA-REAGELNMLNKGAGDFPDQIYDFHENYGRPLKALRFVAHGLDRFPERAGKELTQLTQLTLASNRLTELPDSICDLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LSRMTCHTLSFNHNKLVALPRCLANMINLTALSXXXXXXXXXXXXXXXXXXXXTVKLCANIIEELPESISRLPRLKSLWLDHNAPMAALPWNFYMLTSLVELRMDANPG----------------------MKYPTPDTLLQGAEAVRNWFRKRQKQALFARKHRVVATMQDFMEQCG--EVRPSIAHQGYFEAGVERSGAVWFQVVWDKFWDEMLPGLRDAW 552
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6503.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMJ1_ECTSI1.520e-4449.01Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KAI0_9PHAE1.140e-2160.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4A2F7_9STRA7.940e-1234.05Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6503contigP-wetherbeei_contig6503:733..3355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LMJ1
Preferred nameLRCH1
PFAMsCH,LRR_8
Model size1362
Max annot lvl2759|Eukaryota
KEGG koko:K09506,ko:K10641
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0002683,GO:0002685,GO:0002686,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010033,GO:0016020,GO:0023052,GO:0030334,GO:0030336,GO:0032879,GO:0034097,GO:0034260,GO:0040012,GO:0040013,GO:0042221,GO:0043086,GO:0043087,GO:0044092,GO:0044424,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051270,GO:0051271,GO:0051336,GO:0051346,GO:0051716,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071345,GO:0071944,GO:1990868,GO:1990869,GO:2000145,GO:2000146,GO:2000401,GO:2000402,GO:2000404,GO:2000405
Exons6
Evalue2.48e-45
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
EC2.3.2.27
Descriptionregulation of response to stimulus
Cds size1362
COG categoryU
BRITEko00000,ko01000,ko03009,ko03110,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6503.1.1prot_P-wetherbeei_contig6503.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6503 733..3355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186918.4747334-CDS-P-wetherbeei_contig6503:732..8691683186918.4747334-CDS-P-wetherbeei_contig6503:732..869Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6503 733..869 +
1683186918.4861712-CDS-P-wetherbeei_contig6503:1131..13841683186918.4861712-CDS-P-wetherbeei_contig6503:1131..1384Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6503 1132..1384 +
1683186918.4956174-CDS-P-wetherbeei_contig6503:1677..19651683186918.4956174-CDS-P-wetherbeei_contig6503:1677..1965Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6503 1678..1965 +
1683186918.504888-CDS-P-wetherbeei_contig6503:2207..24651683186918.504888-CDS-P-wetherbeei_contig6503:2207..2465Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6503 2208..2465 +
1683186918.513541-CDS-P-wetherbeei_contig6503:2719..28511683186918.513541-CDS-P-wetherbeei_contig6503:2719..2851Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6503 2720..2851 +
1683186918.5217502-CDS-P-wetherbeei_contig6503:3061..33551683186918.5217502-CDS-P-wetherbeei_contig6503:3061..3355Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6503 3062..3355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6503.1.1

>prot_P-wetherbeei_contig6503.1.1 ID=prot_P-wetherbeei_contig6503.1.1|Name=mRNA_P-wetherbeei_contig6503.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=454bp
MKQLDFDTGTYFYRDAQNGQTFWDKPIKSKIVPVPASLPENPEDNRKHAR
RARERNARLRAIALKRQIWDQQKKKEVEVSTSTATATVEGLWKEAERLAV
LNGGEFNMSWQELGSIHLCLFDFEKRLGTKLVSLRLVGHSLTELPSAVGE
RCRSLTSLSLCANRLTVLPDSLCDLAALTELNLLKNRLVTLPTRIGNLMV
LKRLHLSSNALTALPPSFGNLTELSHQVILDCNRLRQLPETLGLMQCKVL
NVSANRLVALPHCIKAMRRLRRLLADDNGLQHLPSDIGESPSLTALHLRR
NRISELPGSICQLRTLRVLLLDHNHMTGLPMEFHRLTALTRLMLEGNRHM
VYPTAEVLAGGAEKVRQWCECRQRERARARRHTVVIAFQDILSQVASLEL
GPPQFFEADVAADIDHAANLYYAVVWEKFWEVILPRLELAWQAGAATPEA
AAAA
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mRNA from alignment at P-wetherbeei_contig6503:733..3355+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6503.1.1 ID=mRNA_P-wetherbeei_contig6503.1.1|Name=mRNA_P-wetherbeei_contig6503.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2623bp|location=Sequence derived from alignment at P-wetherbeei_contig6503:733..3355+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACAGCTCGATTTCGACACGGGGACCTATTTCTATCGAGATGCTCA
GAATGGGCAGACCTTCTGGGACAAGCCGATTAAAAGCAAGATCGTGCCGG
TTCCAGCGTCGCTGCCGGAGAACCCCGAAGACAATAGGTGCGCCATCCTC
CTTGATGAATTCTTTCAGGCCGTTTGGTTTAGATCTTTTCGTTCGAAAGG
AATTGTGAGGTTTCGTTTTGCTACTTTGGCGATTCGAGAATCGCTCTGAG
TCAATTCGTGGTGCAGCCTTTCACATCTTTTCACACCTTGTACTTAGTGG
TGGCAACCAAAACTACATGCCTCAGTTGCTTCGGTTTGCGATCGATGTGC
TACCTCTGAATGTCGCGATCTCTTCCTTTTCGTTTGTTTTCCAACGCAGA
AAGCATGCGCGACGAGCGCGGGAGCGGAACGCGAGATTGCGCGCCATCGC
CCTGAAGCGGCAGATCTGGGACCAGCAGAAGAAGAAGGAAGTCGAAGTCA
GCACGAGCACGGCCACCGCCACAGTAGAAGGGCTATGGAAAGAAGCCGAG
CGGCTGGCGGTGTTAAACGGCGGCGAGTTCAACATGAGCTGGCAGGAGCT
CGGCAGCATCCACCTGTGCCTCTTCGACTTCGAGAAGCGGCTGGGCACAA
AGGTGAGAGCCTCTGAATTTCCTTTGCCGAGGCCGGATACAAATCTTCCG
CTTTGCCAGGAGCAGGTGTGAATTGCCTCCGTATTCGTCAACGCACTAGG
CTGCTGCAGCATTCTCCCCTCCCCGTCATGCTCCTTTACAGCCTTCCCCT
CTATTGTGGTTACTTTCCTCTCCTCCGCCTTCCCCAACATTTGTTTTCCC
CTCTCCCGACAACGCCTCGAACCTATCCCCCAACGCCTAAGCGTTTCACT
TGTAAGCGCTTTCCTCTTCGCCCCCTCTTTTCTTTCTCCCGCCAGCTAGT
GTCGCTGCGGCTGGTCGGGCACAGCCTCACCGAGCTGCCATCAGCCGTCG
GCGAGCGCTGCCGCTCCCTCACCTCGCTTTCGCTCTGCGCCAACCGGCTG
ACGGTGCTGCCTGACAGTCTCTGCGACCTGGCGGCGCTGACAGAGCTGAA
CCTTCTCAAAAATCGGCTGGTGACGCTGCCGACGCGCATCGGCAACCTGA
TGGTGCTGAAGCGGCTGCACCTGTCGAGCAACGCACTCACGGCGCTGCCG
CCGTCCTTCGGCAACCTCACCGAATTATCCCATGTGAGTCGGGCTGCTGT
CTGGCAGCAGTTTGTCCCGGCTTACCGTTAATTCATTTCAACGACCCGCT
TGTCCAGTGGCAGGATTTGGCTCTCCGGGTATGGCCCACTTGTGCAAGGT
TCTCCTCAGTCATTCAAATTACGGTACCACTCTTAAATGCGTCAAGAGTG
CAAAGAAACGGAGTCGGTTACATGCACATGTTTCAGCCCACTCCTTTTCT
CCCCTTTCTCCTTATCCCTTCTGAGCAGGTCATCCTGGACTGCAACCGCC
TCCGCCAGCTGCCCGAAACCCTCGGGCTGATGCAATGCAAAGTTTTGAAC
GTCAGCGCCAACCGCCTCGTCGCCCTTCCGCACTGCATAAAGGCAATGCG
CCGCCTGCGCCGCCTGCTGGCGGACGACAATGGCCTGCAACACCTGCCCT
CCGACATTGGGGAGAGCCCGTCGCTGACGGCGCTGCACCTGCGGCGAAAC
CGGATCAGCGAGCTGCCCGGCAGCATCTGCCAGGTGGGTCGGTACTTAGC
GGTGGAGCAGCAGACGGTTTTGGCGGCGGCAACGGATGTGCGTAGAGAGG
GTTCTCCTGTGACGATATCTTGTCGCCTGCTTGACTGTTTGTGTGTGCAC
AGTGTCCAAGCTTACGTACAGGTTGCGCAGTGCCGACTTTGCTTCCTCAG
CAAATCTGTCGTTCTCAGAAACGATGTGCCAGCCCATGCGTCCTCTGTAA
TGGCGATGCTTTTCCTGCGCCGCCATTCTTAATGCAGCTGAGGACGCTGC
GGGTGCTGCTCTTGGACCACAATCACATGACGGGACTGCCGATGGAGTTC
CACCGCCTGACGGCCCTAACCCGCCTCATGCTCGAGGGCAATCGGCACAT
GGTTTACCCTACCGCCGAGGTGTCCCAAAAGTCGCAACTGCCGCAAGGAA
CAGTTTCAGAATGAGTGTTAACTGCAGCTTCCCAGCTTTAATTTCGCCTG
ATTTGAACGCCTCAACGTCTTCGTTGACTGGCCAGAGTTCATGTCAGCCA
ATGTGCATGCTACTGCAGTAACCGGATTTTGCATTTTGGGGCTGCTGGCC
GACTCGTCCCGGCCTCAAGCTGTCCCCAGGTCCTGGCCGGCGGCGCCGAG
AAGGTCCGGCAGTGGTGCGAGTGCCGCCAACGGGAGCGGGCCCGCGCCCG
CCGCCACACAGTCGTCATCGCTTTCCAGGATATCCTGTCGCAGGTCGCTT
CGCTCGAGCTCGGCCCGCCGCAATTCTTCGAGGCAGATGTTGCCGCCGAC
ATCGACCATGCCGCGAACCTTTACTACGCCGTGGTGTGGGAAAAGTTCTG
GGAGGTGATTCTGCCGCGCCTGGAGCTGGCGTGGCAGGCCGGCGCGGCGA
CGCCGGAGGCGGCTGCGGCTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6503:733..3355+

>mRNA_P-wetherbeei_contig6503.1.1 ID=mRNA_P-wetherbeei_contig6503.1.1|Name=mRNA_P-wetherbeei_contig6503.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1362bp|location=Sequence derived from alignment at P-wetherbeei_contig6503:733..3355+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACAGCTCGATTTCGACACGGGGACCTATTTCTATCGAGATGCTCA
GAATGGGCAGACCTTCTGGGACAAGCCGATTAAAAGCAAGATCGTGCCGG
TTCCAGCGTCGCTGCCGGAGAACCCCGAAGACAATAGAAAGCATGCGCGA
CGAGCGCGGGAGCGGAACGCGAGATTGCGCGCCATCGCCCTGAAGCGGCA
GATCTGGGACCAGCAGAAGAAGAAGGAAGTCGAAGTCAGCACGAGCACGG
CCACCGCCACAGTAGAAGGGCTATGGAAAGAAGCCGAGCGGCTGGCGGTG
TTAAACGGCGGCGAGTTCAACATGAGCTGGCAGGAGCTCGGCAGCATCCA
CCTGTGCCTCTTCGACTTCGAGAAGCGGCTGGGCACAAAGCTAGTGTCGC
TGCGGCTGGTCGGGCACAGCCTCACCGAGCTGCCATCAGCCGTCGGCGAG
CGCTGCCGCTCCCTCACCTCGCTTTCGCTCTGCGCCAACCGGCTGACGGT
GCTGCCTGACAGTCTCTGCGACCTGGCGGCGCTGACAGAGCTGAACCTTC
TCAAAAATCGGCTGGTGACGCTGCCGACGCGCATCGGCAACCTGATGGTG
CTGAAGCGGCTGCACCTGTCGAGCAACGCACTCACGGCGCTGCCGCCGTC
CTTCGGCAACCTCACCGAATTATCCCATCAGGTCATCCTGGACTGCAACC
GCCTCCGCCAGCTGCCCGAAACCCTCGGGCTGATGCAATGCAAAGTTTTG
AACGTCAGCGCCAACCGCCTCGTCGCCCTTCCGCACTGCATAAAGGCAAT
GCGCCGCCTGCGCCGCCTGCTGGCGGACGACAATGGCCTGCAACACCTGC
CCTCCGACATTGGGGAGAGCCCGTCGCTGACGGCGCTGCACCTGCGGCGA
AACCGGATCAGCGAGCTGCCCGGCAGCATCTGCCAGCTGAGGACGCTGCG
GGTGCTGCTCTTGGACCACAATCACATGACGGGACTGCCGATGGAGTTCC
ACCGCCTGACGGCCCTAACCCGCCTCATGCTCGAGGGCAATCGGCACATG
GTTTACCCTACCGCCGAGGTCCTGGCCGGCGGCGCCGAGAAGGTCCGGCA
GTGGTGCGAGTGCCGCCAACGGGAGCGGGCCCGCGCCCGCCGCCACACAG
TCGTCATCGCTTTCCAGGATATCCTGTCGCAGGTCGCTTCGCTCGAGCTC
GGCCCGCCGCAATTCTTCGAGGCAGATGTTGCCGCCGACATCGACCATGC
CGCGAACCTTTACTACGCCGTGGTGTGGGAAAAGTTCTGGGAGGTGATTC
TGCCGCGCCTGGAGCTGGCGTGGCAGGCCGGCGCGGCGACGCCGGAGGCG
GCTGCGGCTGCG
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