mRNA_P-wetherbeei_contig6490.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6490.1.1
Unique NamemRNA_P-wetherbeei_contig6490.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6490.1.1 vs. uniprot
Match: UPI0014038110 (neuroblastoma-amplified sequence isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014038110)

HSP 1 Score: 49.3 bits (116), Expect = 7.670e-5
Identity = 29/77 (37.66%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   10 PARQLARDMAEDVVLGVAREHFNAAASLRGPELEAARRCLAVLPWCSDAVAAERRLLDAAALVVDVGADMVPLQLRL 240
            P+++LA   + ++VLG ARE+FNA+ SL    ++ AR CL ++      V  E  L+ A AL+ +   +M+PL++RL
Sbjct: 1176 PSQRLAYARSLELVLGAAREYFNASKSLADDSMDIARECLKLITDAPPRVQEELDLMSALALLEEFKLEMLPLEVRL 1252
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6490.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00140381107.670e-537.66neuroblastoma-amplified sequence isoform X1 n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6490contigP-wetherbeei_contig6490:452..700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FI79
Model size249
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.43e-11
EggNOG OGs2D0V1@1|root,2SFKQ@2759|Eukaryota
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186917.3620572-CDS-P-wetherbeei_contig6490:451..7001683186917.3620572-CDS-P-wetherbeei_contig6490:451..700Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6490 452..700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6490.1.1prot_P-wetherbeei_contig6490.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6490 452..700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6490.1.1

>prot_P-wetherbeei_contig6490.1.1 ID=prot_P-wetherbeei_contig6490.1.1|Name=mRNA_P-wetherbeei_contig6490.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
LPGPARQLARDMAEDVVLGVAREHFNAAASLRGPELEAARRCLAVLPWCS
DAVAAERRLLDAAALVVDVGADMVPLQLRLKVE
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mRNA from alignment at P-wetherbeei_contig6490:452..700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6490.1.1 ID=mRNA_P-wetherbeei_contig6490.1.1|Name=mRNA_P-wetherbeei_contig6490.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig6490:452..700+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGGGCCCGGCGCGGCAGCTGGCGCGGGACATGGCGGAGGACGTGGT
GCTCGGGGTGGCGCGAGAGCACTTCAATGCGGCAGCATCGCTGCGCGGGC
CCGAGCTGGAGGCGGCGCGGCGCTGCCTGGCGGTGCTGCCATGGTGCAGT
GACGCCGTGGCGGCGGAACGGCGGCTGCTGGACGCCGCCGCGCTCGTGGT
GGACGTCGGCGCTGATATGGTGCCACTGCAATTGCGTTTGAAAGTGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6490:452..700+

>mRNA_P-wetherbeei_contig6490.1.1 ID=mRNA_P-wetherbeei_contig6490.1.1|Name=mRNA_P-wetherbeei_contig6490.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig6490:452..700+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGGGCCCGGCGCGGCAGCTGGCGCGGGACATGGCGGAGGACGTGGT
GCTCGGGGTGGCGCGAGAGCACTTCAATGCGGCAGCATCGCTGCGCGGGC
CCGAGCTGGAGGCGGCGCGGCGCTGCCTGGCGGTGCTGCCATGGTGCAGT
GACGCCGTGGCGGCGGAACGGCGGCTGCTGGACGCCGCCGCGCTCGTGGT
GGACGTCGGCGCTGATATGGTGCCACTGCAATTGCGTTTGAAAGTGGAG
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