mRNA_P-wetherbeei_contig6470.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6470.2.1
Unique NamemRNA_P-wetherbeei_contig6470.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6470.2.1 vs. uniprot
Match: K8YQC8_NANGC (Transcript antisense to ribosomal rna protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQC8_NANGC)

HSP 1 Score: 167 bits (423), Expect = 3.690e-50
Identity = 86/119 (72.27%), Postives = 89/119 (74.79%), Query Frame = 1
Query:    1 KVLCIFPSRYLFAIGLPPVFSFRWNLPPALSCNPKQLDSPKADRASGVPSTRGAVTLDGVVFQRTWPGAETGRASLDYNSGPARRPDLHVEHFPLRSPLLGESWLVSFPPLSYMLKSSG 357
            KVLCIFPSRYLFAIGLPP+FS RWNLPPALSCNPKQLDS K  R     S  G VTL G +FQ T   +  G  SLDYNS P   PD  VE FPL SPLLGESWLVSFPPLSYMLKSSG
Sbjct:   36 KVLCIFPSRYLFAIGLPPIFSLRWNLPPALSCNPKQLDSSKTRRRRTHASMYGTVTLWGALFQGTCLASADGCVSLDYNSEPYNDPDFQVELFPLHSPLLGESWLVSFPPLSYMLKSSG 154          
BLAST of mRNA_P-wetherbeei_contig6470.2.1 vs. uniprot
Match: A0A483A513_9GAMM (Uncharacterized protein n=1 Tax=uncultured SUP05 cluster bacterium TaxID=655186 RepID=A0A483A513_9GAMM)

HSP 1 Score: 125 bits (314), Expect = 1.500e-33
Identity = 77/132 (58.33%), Postives = 90/132 (68.18%), Query Frame = -2
Query:    3 SIVAPPIKQEDPLDLSI*LSGGKETNQDSPSNGERSGKCSTCKSGLLAGPEL*SREAR-PVSAPGQVR*KTTPSRVTAPRVLGTPDARSA--FGESSCLGLQLKAGGKFHLKLNTGGRPIANKYREGKMQRT 389
            +I  P I+++ PL+LSI +SGGKETNQDSPSNGERSGK S+ KS      EL   EA  P S   ++  K T  RV AP    TP  R+A  FGES CLG+Q K GGK HLKLNTG RPIANKYREGK++ T
Sbjct:   23 NISEPQIRRDHPLNLSISISGGKETNQDSPSNGERSGKSSSLKSLACRARELWPGEAAVPESVLSKLTWKGTSKRVRAP--CATPPGRAATVFGESGCLGMQPKVGGKLHLKLNTGTRPIANKYREGKVKST 152          
BLAST of mRNA_P-wetherbeei_contig6470.2.1 vs. uniprot
Match: A0A1C7LM27_GRIFR (Uncharacterized protein n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7LM27_GRIFR)

HSP 1 Score: 126 bits (317), Expect = 4.890e-33
Identity = 72/120 (60.00%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    1 KVLCIFPSRYLFAIGLPPVFSFRWNLPPALSCNPKQLDSPKADRASGVPSTR-GAVTLDGVVFQRTWPGAETGRASLDYNSGPARRPDLHVEHFPLRSPLLGESWLVSFPPLSYMLKSSG 357
            KVL IFPSRYLFAIGL P+FSFRWNLPP LSC PKQLDS +A   + V   + G +TL   +FQ T   +     S DYNS   R PD   E FPL S LLGES LVSFPPL  MLK SG
Sbjct:  125 KVLFIFPSRYLFAIGLSPIFSFRWNLPPILSCIPKQLDSSRAHHKALVVRVKDGILTLYDALFQETCTRSSAESTSPDYNSDGLRPPDFKFELFPLHSQLLGESLLVSFPPLIDMLKFSG 244          
BLAST of mRNA_P-wetherbeei_contig6470.2.1 vs. uniprot
Match: A0A0R0GH08_SOYBN (Uncharacterized protein n=1 Tax=Glycine max TaxID=3847 RepID=A0A0R0GH08_SOYBN)

HSP 1 Score: 126 bits (317), Expect = 2.920e-32
Identity = 85/170 (50.00%), Postives = 92/170 (54.12%), Query Frame = 1
Query:    1 KVLCIFPSRYLFAIGLPPVFSFRWNLPPALSCNPKQLDSPKADRASGVPSTRGAVTLDGVVFQRTWPGAETGRASLDYNSGPARRPDLHVEHFPLRSPLLGESWLVSFPPLSYMLKSSGSSCLIGGATMDVRECVQSFDDSLASAIRKTYRISLCSSSLWEPRHPSLKVV 510
            KVL IFPSRYLFAIGL PVFS   NLPP   C PKQ DSP A R    P T G         +   PG    R  L       R  D H   FP+RSPLL ES LVSFPPL  ML S+G   L  G       CVQ  D S  SAI   YRISL SSS+ EPR+P  +V+
Sbjct:  100 KVLFIFPSRYLFAIGLSPVFSLGRNLPPDWGCIPKQPDSPTAPRVRQGPGTTGLSPSLAPPSRGLGPGPPL-RTLLQTTIRTPRATDFHGGLFPVRSPLLRESLLVSFPPLIDMLNSAGRRAL--GLMASGATCVQRLDGSRDSAIHTKYRISLRSSSMQEPRYPLPRVI 266          
BLAST of mRNA_P-wetherbeei_contig6470.2.1 vs. uniprot
Match: A0A6G0W3G0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W3G0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.780e-28
Identity = 66/119 (55.46%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 KVLCIFPSRYLFAIGLPPVFSFRWNLPPALSCNPKQLDSPKADRASGVPSTRGAVTLDGVVFQRTWPGAETGRASLDYNSGPARRPDLHVEHFPLRSPLLGESWLVSFPPLSYMLKSSG 357
            KVL IFPSRYLFAIGL P+FSFRWNLPPALSC PKQLDS KA R    P  R           R     +  + ++ +  G     D  +E FPL SPLL ES LVSFPPL+YMLK SG
Sbjct:   25 KVLFIFPSRYLFAIGLAPIFSFRWNLPPALSCIPKQLDSKKAYRTHRQPEQRREYHPPCCPLPR-----DLSQTTIRHLRG-----DFKLELFPLHSPLLRESLLVSFPPLNYMLKFSG 133          
BLAST of mRNA_P-wetherbeei_contig6470.2.1 vs. uniprot
Match: K0S109_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S109_THAOC)

HSP 1 Score: 107 bits (268), Expect = 1.150e-26
Identity = 70/137 (51.09%), Postives = 73/137 (53.28%), Query Frame = 1
Query:    1 KVLCIFPSRYLFAIGLPPVFSFRWNLPPALSCNPKQLDSPKADRASGVP------------------STRGAVTLDGVVFQRTWPGAETGRASLDYNSGPARRPDLHVEHFPLRSPLLGESWLVSFPPLSYMLKSSG 357
            KVLCIFPSRYL AIG+PP+FSFRWNLPP LSCNPKQLDS K     G P                   T  A  L    F R   GA  G              D H E  PL SPLLGES LVSFPPL+YMLK  G
Sbjct:   39 KVLCIFPSRYLCAIGIPPIFSFRWNLPPTLSCNPKQLDSLK-----GYPWHKVLRQEREFHPLRFHFPTELASGLGRKHFSRPQFGAPEGCT------------DSHGELIPLHSPLLGESLLVSFPPLNYMLKFGG 158          
BLAST of mRNA_P-wetherbeei_contig6470.2.1 vs. uniprot
Match: A0A6A5P2T1_LUPAL (Uncharacterized protein n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5P2T1_LUPAL)

HSP 1 Score: 110 bits (275), Expect = 1.460e-25
Identity = 81/189 (42.86%), Postives = 92/189 (48.68%), Query Frame = 1
Query:    1 KVLCIFPSRYLFAIGLPPVFSFRWNLPPALSCNPKQLDSPKADRASGVPSTRGAVTLDGVVFQRTWPGAETGRASLDYNSG----------PARRPDLHVEHFPLRSPLL-GESWLVSFPPLSYMLKSSGS---------SCLIGGATMDVRECVQSFDDSLASAIRKTYRISLCSSSLWEPRHPSLKV 507
            KVL IFPSRYLFAIGL PVFS   NLPP   C PKQ DSP A R +      GA+TL G  FQ TW  + T  AS DYNS           P+RRP    +    R  LL G        P ++                  +  GAT     CVQ  D S  SAI   YRISL SSS+ EPR+P  +V
Sbjct:  102 KVLFIFPSRYLFAIGLSPVFSLGRNLPPDWGCIPKQPDSPTAPRGATGSGHDGALTLSGAPFQGTWARSATEDASPDYNSDTEGVRFSCHHPSRRPPPRTQFSTNRETLLTGSQHSPRLVPSTWPRHGGNDVQHPGRRALGLMASGAT-----CVQRLDGSRDSAIHTKYRISLRSSSMQEPRYPLPRV 285          
BLAST of mRNA_P-wetherbeei_contig6470.2.1 vs. uniprot
Match: A0A0L9VIF3_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9VIF3_PHAAN)

HSP 1 Score: 108 bits (269), Expect = 1.510e-25
Identity = 76/170 (44.71%), Postives = 88/170 (51.76%), Query Frame = 1
Query:    1 KVLCIFPSRYLFAIGLPPVFSFRWNLPPALSCNPKQLDSPKADRASGVPSTRGAVTLDGVVFQRTWPGAETGRASLDYNSGPARRPDLHVEHFPLRSPLLGESWLVSFPPLSYMLKSSGSSCLIGGATMDVRECVQSFDDSLASAIRKTYRISLCSSSLWEPRHPSLKVV 510
            KVL IFPSRYLFAIGL PVFS   NLP    C PKQ DSP A R +      GA+TL G  FQ TW  + T  ASLDYNS      +   + F         SW       +  L +SG++C            VQ  D S  S I   YRISL SSS+ EPR+P L+VV
Sbjct:   61 KVLFIFPSRYLFAIGLSPVFSLGRNLPLDWGCIPKQPDSPTAPRGATGSGHNGALTLSGAPFQGTWAWSATEDASLDYNS------NAKGDRF---------SWWAVPGRRALGLVASGATC------------VQRLDGSRDSTIHTKYRISLRSSSMQEPRYPLLRVV 203          
BLAST of mRNA_P-wetherbeei_contig6470.2.1 vs. uniprot
Match: A0A072THI8_MEDTR (Uncharacterized protein (Fragment) n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072THI8_MEDTR)

HSP 1 Score: 105 bits (263), Expect = 4.310e-25
Identity = 76/181 (41.99%), Postives = 90/181 (49.72%), Query Frame = 1
Query:    1 KVLCIFPSRYLFAIGLPPVFSFRWNLPPALSCNPKQLDSPKADRASGVPSTRGAVTLDGVVFQRTWPGAETGRASLDYNSG-----------PARRPDLHVEHFPLRSPLLGESWLVSFPPLSYMLKSSGSSCLIGGATMDVRECVQSFDDSLASAIRKTYRISLCSSSLWEPRHPSLKVV 510
            +VL IFPSRYLFAIGL P+FS   NLPP   C PKQ DSP A R +      GA+TL G  FQ TW  +    AS DYNS            PA  PDL   H         E +       +  L +SG++C            VQ  D S  SAI   YRISL SSS+ EPR+P  +V+
Sbjct:    7 QVLFIFPSRYLFAIGLSPIFSLGRNLPPDWGCIPKQPDSPTAPRGATGSEHNGALTLSGAPFQGTWVRSAAEDASPDYNSNAEGDRFSWWAYPAP-PDLRSHH---------ERYKTHVGRRALNLMASGATC------------VQRLDGSRDSAIHTKYRISLRSSSMQEPRYPLPRVI 165          
BLAST of mRNA_P-wetherbeei_contig6470.2.1 vs. uniprot
Match: A0A072TIH7_MEDTR (Senescence-associated protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072TIH7_MEDTR)

HSP 1 Score: 108 bits (270), Expect = 2.830e-24
Identity = 77/181 (42.54%), Postives = 90/181 (49.72%), Query Frame = 1
Query:    1 KVLCIFPSRYLFAIGLPPVFSFRWNLPPALSCNPKQLDSPKADRASGVPSTRGAVTLDGVVFQRTWPGAETGRASLDYNSG-----------PARRPDLHVEHFPLRSPLLGESWLVSFPPLSYMLKSSGSSCLIGGATMDVRECVQSFDDSLASAIRKTYRISLCSSSLWEPRHPSLKVV 510
            KVL IFPSRYLFAIGL P+FS   NLPP   C PKQ DSP A R +      GA+TL G  FQ TW  +    AS DYNS            PA  PDL   H         E +       +  L +SG++C            VQ  D S  SAI   YRISL SSS+ EPR+P  +V+
Sbjct:  515 KVLFIFPSRYLFAIGLSPIFSLGRNLPPDWGCIPKQPDSPTAPRGATGSEHNGALTLSGAPFQGTWVRSAAEDASPDYNSNAEGDRFSWWAYPAP-PDLRSHH---------ERYKTHVGRRALNLMASGATC------------VQRLDGSRDSAIHTKYRISLSSSSMQEPRYPLSRVI 673          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6470.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8YQC8_NANGC3.690e-5072.27Transcript antisense to ribosomal rna protein n=1 ... [more]
A0A483A513_9GAMM1.500e-3358.33Uncharacterized protein n=1 Tax=uncultured SUP05 c... [more]
A0A1C7LM27_GRIFR4.890e-3360.00Uncharacterized protein n=1 Tax=Grifola frondosa T... [more]
A0A0R0GH08_SOYBN2.920e-3250.00Uncharacterized protein n=1 Tax=Glycine max TaxID=... [more]
A0A6G0W3G0_9STRA1.780e-2855.46Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
K0S109_THAOC1.150e-2651.09Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
A0A6A5P2T1_LUPAL1.460e-2542.86Uncharacterized protein n=2 Tax=Lupinus albus TaxI... [more]
A0A0L9VIF3_PHAAN1.510e-2544.71Uncharacterized protein n=1 Tax=Phaseolus angulari... [more]
A0A072THI8_MEDTR4.310e-2541.99Uncharacterized protein (Fragment) n=1 Tax=Medicag... [more]
A0A072TIH7_MEDTR2.830e-2442.54Senescence-associated protein n=1 Tax=Medicago tru... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6470contigP-wetherbeei_contig6470:2612..3429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0S109
Model size510
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue1.88e-27
EggNOG OGs2CZQV@1|root,2SBAE@2759|Eukaryota
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186915.932955-CDS-P-wetherbeei_contig6470:2611..27231683186915.932955-CDS-P-wetherbeei_contig6470:2611..2723Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6470 2612..2723 -
1683186915.9447763-CDS-P-wetherbeei_contig6470:3031..34291683186915.9447763-CDS-P-wetherbeei_contig6470:3031..3429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6470 3032..3429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6470.2.1prot_P-wetherbeei_contig6470.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6470 2612..3429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6470.2.1

>prot_P-wetherbeei_contig6470.2.1 ID=prot_P-wetherbeei_contig6470.2.1|Name=mRNA_P-wetherbeei_contig6470.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
KVLCIFPSRYLFAIGLPPVFSFRWNLPPALSCNPKQLDSPKADRASGVPS
TRGAVTLDGVVFQRTWPGAETGRASLDYNSGPARRPDLHVEHFPLRSPLL
GESWLVSFPPLSYMLKSSGSSCLIGGATMDVRECVQSFDDSLASAIRKTY
RISLCSSSLWEPRHPSLKVV
back to top

mRNA from alignment at P-wetherbeei_contig6470:2612..3429-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6470.2.1 ID=mRNA_P-wetherbeei_contig6470.2.1|Name=mRNA_P-wetherbeei_contig6470.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=818bp|location=Sequence derived from alignment at P-wetherbeei_contig6470:2612..3429- (Phaeothamnion wetherbeei SAG_119_79)
AAAGTTCTTTGCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCC ACCGGTATTTAGCTTTAGATGGAATTTACCACCCGCTTTGAGCTGCAATC CCAAGCAACTCGACTCGCCGAAGGCGGACCGTGCGTCCGGCGTCCCAAGC ACCCGCGGGGCTGTCACCCTTGATGGCGTCGTCTTTCAACGAACTTGGCC CGGCGCCGAGACTGGTCGCGCCTCTCTAGACTACAATTCGGGCCCCGCAA GGAGGCCGGATTTACACGTTGAGCACTTCCCGCTTCGCTCGCCGTTACTG GGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTTAGTTATATGCTTAAATC CAGCGGGTCTTCTTGCTTGATCGGAGGTGCGACGATGGACGTTCGCGAGT TTTGCTTCCCCGTCTCTTGCGTCTCTTCTGTCCGTCAGTCCGAGCAGGCA GAGCGTTTCCGTCACCGACTGGATCTTTTCAGGAGAGAAGACGGCGCGCA GCGAACCGGGATTCGCCACGGCGTCCGCAAGACACAGAGAGAACGGTTCT TGGGCGCGCACTCTCATCGCACAAGGGGCGCGTGCACAGTCCGCCGGACG ACAAGGACAAAAGAGGTCGCGTGACCCCGATCGTCCTCTCCGCCGGCGAG GGGTGTCAACAGACACTCCGACACGCATGCTCCCAGGCATATCCCGGAAG CGCAAGATGTGTTCAAAGTTTTGACGACTCGCTAGCTTCTGCAATTCGCA AGACGTATCGCATTTCACTTTGTTCTTCATCGTTGTGGGAGCCAAGACAT CCATCGCTGAAAGTTGTA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6470:2612..3429-

>mRNA_P-wetherbeei_contig6470.2.1 ID=mRNA_P-wetherbeei_contig6470.2.1|Name=mRNA_P-wetherbeei_contig6470.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig6470:2612..3429- (Phaeothamnion wetherbeei SAG_119_79)
AAAGTTCTTTGCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCC
ACCGGTATTTAGCTTTAGATGGAATTTACCACCCGCTTTGAGCTGCAATC
CCAAGCAACTCGACTCGCCGAAGGCGGACCGTGCGTCCGGCGTCCCAAGC
ACCCGCGGGGCTGTCACCCTTGATGGCGTCGTCTTTCAACGAACTTGGCC
CGGCGCCGAGACTGGTCGCGCCTCTCTAGACTACAATTCGGGCCCCGCAA
GGAGGCCGGATTTACACGTTGAGCACTTCCCGCTTCGCTCGCCGTTACTG
GGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTTAGTTATATGCTTAAATC
CAGCGGGTCTTCTTGCTTGATCGGAGGTGCGACGATGGACGTTCGCGAAT
GTGTTCAAAGTTTTGACGACTCGCTAGCTTCTGCAATTCGCAAGACGTAT
CGCATTTCACTTTGTTCTTCATCGTTGTGGGAGCCAAGACATCCATCGCT
GAAAGTTGTA
back to top