mRNA_P-wetherbeei_contig6470.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6470.1.1
Unique NamemRNA_P-wetherbeei_contig6470.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6470.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6470contigP-wetherbeei_contig6470:2..1355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1354
Hectar predicted targeting categorymitochondrion
Exons1
Cds size687
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186915.8911424-UTR-P-wetherbeei_contig6470:1..6681683186915.8911424-UTR-P-wetherbeei_contig6470:1..668Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6470 2..668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186915.9052143-CDS-P-wetherbeei_contig6470:668..13551683186915.9052143-CDS-P-wetherbeei_contig6470:668..1355Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6470 669..1355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6470.1.1prot_P-wetherbeei_contig6470.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6470 669..1355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6470.1.1

>prot_P-wetherbeei_contig6470.1.1 ID=prot_P-wetherbeei_contig6470.1.1|Name=mRNA_P-wetherbeei_contig6470.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=229bp
MITASSSSPSGSSYFVRCWRRRHLRVPWSATSGRTPHPARSHQPQTAAYR
DENLTEGGQRSSSGLTDRGRRKQPPMRSCPPACAPKRSAADNVVEFGIND
YWRGVVDRHLEAVELEVGGDYGLAPLLVVVRLQSLPHDEALHLLVVRKLV
EHRTRRLVSLHTQLKVIPQLALVARKSGVIRLCLSNGGCVRGFLRKSRRV
RNERRNVDLDELFCLKFNQAVVIQRAHFS
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mRNA from alignment at P-wetherbeei_contig6470:2..1355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6470.1.1 ID=mRNA_P-wetherbeei_contig6470.1.1|Name=mRNA_P-wetherbeei_contig6470.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1354bp|location=Sequence derived from alignment at P-wetherbeei_contig6470:2..1355+ (Phaeothamnion wetherbeei SAG_119_79)
AGGATGGACTCAAAAGCTGGACGATATGGGGGCCATCGTGGGGGACGGCG
CTGGAGATGCGGAAGAAGCTGCGCGATGCGATCTGGGGTTGCTTGTTTGT
TCCACGGTACGAAGAGACCTGCACCACCGATGCTCCCGGCACAGGATCCC
GCAGCTTCCTCTTCGAGATGCAGGCTTTCCTCCACCCCAATCTCGCCAAC
ATGCGCTACGTGGATAGGCTGGCGTCTTCGCCGGCGCACGCCGATGTAGT
CAAGAAGCAGATTCGGGCGGGGGTCCATGGCCTGCTGGGAAAAAGTCTTC
GCTGCCAACCACGCGGCGGCGGTGGCGGCTGCAGCAGCCGCAGACGCAGC
AAAGGCGGCGGAAACAGCGGCTGGGGAAGAGGACGCCTCGGTGGGTCAAA
AGCGCATGGCGACGATCGGCGATTTCTTCGGCGGCAGAGCCGCCAAGAGC
AGGGTGGCGGCACTGGCGGCGGATTCGGTGGCTGCCCGCAGCCTCAAAGT
GCTTGGGCCGCGCGCCGTCAATGTCGCTCATTTTCCGTACTTCCGCAACA
CCGTGCCACCGGAGATGGCGGTAGAGATGAACCTGCGGTCGTATGAGGGC
TGGGCGGGGCTGCCAGTGGCGCCAAAGCTCGGCACCCTAAGGGTCGAGGG
CACGCTGAATTGGCGGAATGATCACGGCGTCAAGCAGTTCTCCGAGCGGG
TCGTCATATTTCGTACGGTGCTGGCGGCGCCGGCATCTTCGGGTTCCCTG
GAGCGCGACTTCTGGCCGGACGCCTCATCCGGCCCGATCGCACCAGCCTC
AGACCGCGGCATATCGAGATGAGAATTTGACGGAAGGCGGGCAGCGGTCT
TCCAGCGGTCTGACCGATCGAGGGCGCCGAAAACAACCGCCAATGCGATC
TTGTCCTCCGGCTTGTGCCCCAAAGCGGTCAGCTGCGGACAATGTTGTTG
AATTCGGCATCAATGACTACTGGCGCGGGGTCGTCGATCGGCACCTGGAA
GCTGTAGAGCTGGAGGTTGGTGGCGATTATGGACTCGCCCCGCTTCTTGT
TGTGGTACGCCTCCAATCTCTCCCACACGATGAGGCCCTGCATCTGCTCG
TGGTCAGGAAGCTTGTCGAGCACCGAACGCGCCGTCTCGTTTCCCTGCAC
ACACAGCTGAAGGTAATACCACAGCTTGCGTTGGTTGCGCGCAAAAGCGG
CGTTATCCGTCTTTGCCTGAGCAATGGCGGCTGCGTTCGCGGCTTTCTCC
GCAAGAGTCGCCGTGTCAGGAACGAAAGGCGGAACGTCGACTTGGACGAG
CTCTTTTGTCTAAAGTTTAATCAAGCCGTCGTCATCCAAAGAGCCCACTT
CAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6470:2..1355+

>mRNA_P-wetherbeei_contig6470.1.1 ID=mRNA_P-wetherbeei_contig6470.1.1|Name=mRNA_P-wetherbeei_contig6470.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig6470:2..1355+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCACGGCGTCAAGCAGTTCTCCGAGCGGGTCGTCATATTTCGTACG
GTGCTGGCGGCGCCGGCATCTTCGGGTTCCCTGGAGCGCGACTTCTGGCC
GGACGCCTCATCCGGCCCGATCGCACCAGCCTCAGACCGCGGCATATCGA
GATGAGAATTTGACGGAAGGCGGGCAGCGGTCTTCCAGCGGTCTGACCGA
TCGAGGGCGCCGAAAACAACCGCCAATGCGATCTTGTCCTCCGGCTTGTG
CCCCAAAGCGGTCAGCTGCGGACAATGTTGTTGAATTCGGCATCAATGAC
TACTGGCGCGGGGTCGTCGATCGGCACCTGGAAGCTGTAGAGCTGGAGGT
TGGTGGCGATTATGGACTCGCCCCGCTTCTTGTTGTGGTACGCCTCCAAT
CTCTCCCACACGATGAGGCCCTGCATCTGCTCGTGGTCAGGAAGCTTGTC
GAGCACCGAACGCGCCGTCTCGTTTCCCTGCACACACAGCTGAAGGTAAT
ACCACAGCTTGCGTTGGTTGCGCGCAAAAGCGGCGTTATCCGTCTTTGCC
TGAGCAATGGCGGCTGCGTTCGCGGCTTTCTCCGCAAGAGTCGCCGTGTC
AGGAACGAAAGGCGGAACGTCGACTTGGACGAGCTCTTTTGTCTAAAGTT
TAATCAAGCCGTCGTCATCCAAAGAGCCCACTTCAGC
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