mRNA_P-wetherbeei_contig6467.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6467.1.1
Unique NamemRNA_P-wetherbeei_contig6467.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6467.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6467contigP-wetherbeei_contig6467:534..2476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1438
Hectar predicted targeting categoryother localisation
Exons2
Cds size1263
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186915.5177505-UTR-P-wetherbeei_contig6467:533..6811683186915.5177505-UTR-P-wetherbeei_contig6467:533..681Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6467 534..681 -
1683186915.5569315-UTR-P-wetherbeei_contig6467:2449..24761683186915.5569315-UTR-P-wetherbeei_contig6467:2449..2476Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6467 2450..2476 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186915.535876-CDS-P-wetherbeei_contig6467:681..18961683186915.535876-CDS-P-wetherbeei_contig6467:681..1896Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6467 682..1896 -
1683186915.5466142-CDS-P-wetherbeei_contig6467:2401..24491683186915.5466142-CDS-P-wetherbeei_contig6467:2401..2449Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6467 2402..2449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6467.1.1prot_P-wetherbeei_contig6467.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6467 682..2449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6467.1.1

>prot_P-wetherbeei_contig6467.1.1 ID=prot_P-wetherbeei_contig6467.1.1|Name=mRNA_P-wetherbeei_contig6467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=421bp
MDLRGSLRQRAALSDKVDALSEELARADASIASLTSRLHILRAANGRLER
RALGCNAVMIGDGGGGSSTAGRRRSLLGNIGGTAGGGGSGGGNDGGRKGS
LKLADVEALVRQIRSRANAEVREARVEAEAARAAALAAETNLRSAATENV
VLRRRLAGLEEATGSIASRSGVRASSRQTSREESNAAVGAAGAIPRKING
GGPSSPRSDSSAAAVGVSIRDLGGSVAGELSPPAWERQARARAASRARGV
MAAGEATTTTGARTGAAREGAGMAVPTADSAAAAGASAAASETASRASAG
GDGTYRGDASDRLVDRVVGAVVEGDEEAFLAAVRTADAATRRYVLRLLDE
SAGGAGGPPGSSARGAASSLGGNGADSGGGGGNGGGGGGSSADDFNLGDG
GISAKGEDEGESLEVADVGG*
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mRNA from alignment at P-wetherbeei_contig6467:534..2476-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6467.1.1 ID=mRNA_P-wetherbeei_contig6467.1.1|Name=mRNA_P-wetherbeei_contig6467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1943bp|location=Sequence derived from alignment at P-wetherbeei_contig6467:534..2476- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGCGGGAACGGGCGGAGCTGGTGATGGACCTTCGGGGGTCGCTCCG
GCAGCGCGCCGCCCTCAGCGACAAGGTGAGAGAGAAGCTTGGTGTTTTGG
TAGGTGATTAAATGGGAGATGGGACAGATGCGGGTTTTTGTTTTAGGCTT
CTCTTGTGTTTAATCGGGTTGAACCGCGCTTGAAAACTCCTATATGCCGG
CACAAGCAAGTGTTGTAGCCAGAAAGCAGGCTTCACCTTTGATTTCCGCT
GCTAGTTGAAGAGCATATGGCCTCGTTCTGGGCCGCATTATGTGGTCATG
TGCAAGTAACGTCACGATGACGTCTCCCGTAAGGGTTGGTGCCTGGAAGG
GCCGGCGTCGTTTAATAAAATGTTTTGACAAATTTTGTTTACCATCCGAC
AGCAGCAGTGCCTTCTCCCTAACCATCACCAAAGGCAAAGACATTATGTT
TAAAATCTGAAATAGCTCCCTTTCGGTCTTCCTCTTGCCGGCCCTGCCCC
TCGTACCTTCCCAACCCCTCCTGCCGCAAATTCTGTGGCCTGCCATGGCT
TGAGACGGCATTCTGTCACCGCCTCTGCAGGTGGACGCCCTCAGCGAAGA
GCTTGCACGGGCAGATGCCAGCATCGCCTCCCTCACTAGCCGCCTCCACA
TTCTGCGCGCCGCCAACGGCCGCCTCGAGCGGCGCGCCCTCGGCTGCAAC
GCCGTCATGATCGGCGATGGCGGCGGCGGCAGTTCAACTGCCGGCCGACG
ACGCAGCTTGCTCGGCAACATTGGCGGTACTGCCGGTGGCGGCGGCAGCG
GCGGCGGCAATGACGGCGGCCGGAAAGGTTCGCTGAAGCTCGCCGACGTC
GAGGCACTGGTGCGGCAGATTCGGAGCCGGGCAAACGCCGAGGTGCGAGA
GGCGCGCGTCGAGGCGGAAGCAGCCCGCGCCGCTGCTCTGGCCGCCGAGA
CGAACCTCCGCTCGGCCGCCACGGAGAACGTCGTGCTGCGGCGCCGCCTC
GCTGGTCTCGAGGAAGCCACCGGTAGCATTGCATCGCGTTCAGGCGTGAG
AGCTTCGTCGCGCCAGACGTCTCGTGAAGAATCCAATGCCGCTGTCGGTG
CCGCTGGCGCGATTCCGAGGAAAATTAACGGCGGTGGCCCAAGCAGCCCC
CGCAGCGACTCCAGCGCCGCCGCTGTCGGAGTTTCCATCCGAGACCTCGG
CGGTTCGGTCGCGGGCGAACTTTCTCCGCCAGCGTGGGAACGACAAGCAA
GGGCTCGAGCAGCGTCGAGGGCTCGAGGGGTGATGGCTGCAGGTGAGGCA
ACAACCACAACAGGAGCGAGAACAGGGGCAGCAAGGGAAGGAGCGGGGAT
GGCAGTACCGACTGCGGACTCGGCTGCGGCTGCTGGTGCGTCAGCGGCAG
CGTCGGAGACGGCGTCAAGAGCATCGGCCGGGGGGGATGGCACGTACCGG
GGAGACGCCTCGGACCGGTTGGTGGATCGCGTTGTGGGGGCGGTCGTGGA
GGGCGACGAAGAGGCCTTCTTGGCGGCGGTGCGGACCGCCGACGCCGCAA
CACGCCGCTACGTCCTGCGGCTGCTCGACGAAAGCGCTGGCGGGGCCGGC
GGCCCCCCTGGCTCTTCTGCAAGAGGTGCGGCAAGTTCGCTGGGCGGCAA
CGGCGCCGACAGCGGCGGCGGCGGTGGCAACGGCGGCGGCGGCGGCGGCA
GCAGCGCCGATGACTTCAACTTAGGAGACGGTGGCATTAGCGCGAAAGGA
GAAGATGAAGGTGAGAGCCTCGAGGTGGCGGACGTGGGAGGATAACTTAA
GGAAGGAAGTTGGGGGCGGTGCCACGGAGGCACCTCCAAGACGGGCGGCC
GCATTGGCCGATTTCACATAGTAAGCAAATTTGGTTCGCCGGGCCTGCAG
CCCTAGGCGACCATAATCCTCCATTTCGAACGGAATAAGCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6467:534..2476-

>mRNA_P-wetherbeei_contig6467.1.1 ID=mRNA_P-wetherbeei_contig6467.1.1|Name=mRNA_P-wetherbeei_contig6467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1263bp|location=Sequence derived from alignment at P-wetherbeei_contig6467:534..2476- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCTTCGGGGGTCGCTCCGGCAGCGCGCCGCCCTCAGCGACAAGGT
GGACGCCCTCAGCGAAGAGCTTGCACGGGCAGATGCCAGCATCGCCTCCC
TCACTAGCCGCCTCCACATTCTGCGCGCCGCCAACGGCCGCCTCGAGCGG
CGCGCCCTCGGCTGCAACGCCGTCATGATCGGCGATGGCGGCGGCGGCAG
TTCAACTGCCGGCCGACGACGCAGCTTGCTCGGCAACATTGGCGGTACTG
CCGGTGGCGGCGGCAGCGGCGGCGGCAATGACGGCGGCCGGAAAGGTTCG
CTGAAGCTCGCCGACGTCGAGGCACTGGTGCGGCAGATTCGGAGCCGGGC
AAACGCCGAGGTGCGAGAGGCGCGCGTCGAGGCGGAAGCAGCCCGCGCCG
CTGCTCTGGCCGCCGAGACGAACCTCCGCTCGGCCGCCACGGAGAACGTC
GTGCTGCGGCGCCGCCTCGCTGGTCTCGAGGAAGCCACCGGTAGCATTGC
ATCGCGTTCAGGCGTGAGAGCTTCGTCGCGCCAGACGTCTCGTGAAGAAT
CCAATGCCGCTGTCGGTGCCGCTGGCGCGATTCCGAGGAAAATTAACGGC
GGTGGCCCAAGCAGCCCCCGCAGCGACTCCAGCGCCGCCGCTGTCGGAGT
TTCCATCCGAGACCTCGGCGGTTCGGTCGCGGGCGAACTTTCTCCGCCAG
CGTGGGAACGACAAGCAAGGGCTCGAGCAGCGTCGAGGGCTCGAGGGGTG
ATGGCTGCAGGTGAGGCAACAACCACAACAGGAGCGAGAACAGGGGCAGC
AAGGGAAGGAGCGGGGATGGCAGTACCGACTGCGGACTCGGCTGCGGCTG
CTGGTGCGTCAGCGGCAGCGTCGGAGACGGCGTCAAGAGCATCGGCCGGG
GGGGATGGCACGTACCGGGGAGACGCCTCGGACCGGTTGGTGGATCGCGT
TGTGGGGGCGGTCGTGGAGGGCGACGAAGAGGCCTTCTTGGCGGCGGTGC
GGACCGCCGACGCCGCAACACGCCGCTACGTCCTGCGGCTGCTCGACGAA
AGCGCTGGCGGGGCCGGCGGCCCCCCTGGCTCTTCTGCAAGAGGTGCGGC
AAGTTCGCTGGGCGGCAACGGCGCCGACAGCGGCGGCGGCGGTGGCAACG
GCGGCGGCGGCGGCGGCAGCAGCGCCGATGACTTCAACTTAGGAGACGGT
GGCATTAGCGCGAAAGGAGAAGATGAAGGTGAGAGCCTCGAGGTGGCGGA
CGTGGGAGGATAA
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