mRNA_P-wetherbeei_contig6463.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6463.2.1
Unique NamemRNA_P-wetherbeei_contig6463.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6463.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6463contigP-wetherbeei_contig6463:2117..3237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size462
Hectar predicted targeting categoryother localisation
Exons2
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186915.2919059-CDS-P-wetherbeei_contig6463:2116..23491683186915.2919059-CDS-P-wetherbeei_contig6463:2116..2349Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6463 2117..2349 +
1683186915.306649-CDS-P-wetherbeei_contig6463:3010..32361683186915.306649-CDS-P-wetherbeei_contig6463:3010..3236Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6463 3011..3236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6463.2.1prot_P-wetherbeei_contig6463.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6463 2117..3236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6463.2.1

>prot_P-wetherbeei_contig6463.2.1 ID=prot_P-wetherbeei_contig6463.2.1|Name=mRNA_P-wetherbeei_contig6463.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
AAAGGAGGEPGMPPPLLVVVASAADAVALGPVMDMLRKSAVHAPAADAAW
RLFVFSPALGCHDLAKLWGLSELTCSPRKMRIFAPWASDPVAAGTVLGRG
GVPYTVTGAIVDKIEAGPDPDGWTYLRGVALHSLPEWESRVETNLRHVLK
TVQ
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mRNA from alignment at P-wetherbeei_contig6463:2117..3237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6463.2.1 ID=mRNA_P-wetherbeei_contig6463.2.1|Name=mRNA_P-wetherbeei_contig6463.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1121bp|location=Sequence derived from alignment at P-wetherbeei_contig6463:2117..3237+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCTGCTGGCGGCGCGGGCGGGGAGCCGGGGATGCCGCCGCCGCTGCT
GGTGGTGGTGGCATCGGCGGCGGACGCGGTGGCGCTCGGACCCGTGATGG
ACATGCTGCGGAAGTCGGCCGTCCACGCGCCAGCCGCCGACGCGGCATGG
CGGCTCTTCGTCTTCTCGCCGGCGCTCGGCTGCCACGACCTCGCGAAGCT
GTGGGGTCTCAGCGAACTGACATGCTCGCCACGGTAAGTCGTCCAACCTT
CTCCTTTCTGCGTATGGCGCATTCCGTATTCTTTCTGTATTTACTTTCGC
GTTGTCGGGGAGGATGTTAAGTCGCGCTTGCATGCTGTTTGCGGTGGCAT
GGGCCGCAAACAGAGCCAACTTTCTTGCAAATGTGGCATATGTAACTGTT
CTACGCTGGGAGCGAACGACGGTCACGAGAAGGCAATTTTCAGAAAACGG
TTCCAGAATTTGGTTTCAGAACCCTCCAGAGTAACCTTCAAATCATTTTT
AAACGGCGTCAAACCGTCTGAATTGGCTGTAAGAGAGTCTGTTTCGTCCC
GCTGACTGCAGACTTGGCGTGGTGCCGGGGAGGTTGTTGCCTGGTTTGTT
AGAAAGCGAGAGGAGCCGTGACATGCTGACGCCAGAAGGATCCGTGCAGC
GGCGAGCGCGTGCTGGCGGCGCGCTGATCTGGTTATTGACGTGCTTGTTG
CCAGCCGTTACCATTTGCTTTAAAAGCGGGCAGCGCAAGTGCAGAGAGCT
TTGAACAGCCCTTCCGCTCCCATGCGCCTTTCTACCGTCTGGCCGCCGCG
TCAGTGCAACTGAAGCTCGCAGCCCTACCCTGATCTTTTCCTTCCTCTCT
TTTCTCCTCGTCCTTTTCTTTCCTTTGATAAACACGACGCGCAGCAAGAT
GCGCATCTTCGCACCGTGGGCCAGCGACCCGGTGGCGGCCGGCACCGTCC
TGGGTCGCGGCGGCGTCCCGTACACTGTCACTGGAGCCATCGTGGACAAG
ATTGAAGCCGGACCAGATCCCGACGGATGGACGTACCTCCGCGGGGTCGC
GCTGCACAGTCTCCCGGAGTGGGAATCGCGCGTCGAGACAAACCTGCGGC
ACGTTCTCAAGACCGTGCAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6463:2117..3237+

>mRNA_P-wetherbeei_contig6463.2.1 ID=mRNA_P-wetherbeei_contig6463.2.1|Name=mRNA_P-wetherbeei_contig6463.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig6463:2117..3237+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCTGCTGGCGGCGCGGGCGGGGAGCCGGGGATGCCGCCGCCGCTGCT
GGTGGTGGTGGCATCGGCGGCGGACGCGGTGGCGCTCGGACCCGTGATGG
ACATGCTGCGGAAGTCGGCCGTCCACGCGCCAGCCGCCGACGCGGCATGG
CGGCTCTTCGTCTTCTCGCCGGCGCTCGGCTGCCACGACCTCGCGAAGCT
GTGGGGTCTCAGCGAACTGACATGCTCGCCACGCAAGATGCGCATCTTCG
CACCGTGGGCCAGCGACCCGGTGGCGGCCGGCACCGTCCTGGGTCGCGGC
GGCGTCCCGTACACTGTCACTGGAGCCATCGTGGACAAGATTGAAGCCGG
ACCAGATCCCGACGGATGGACGTACCTCCGCGGGGTCGCGCTGCACAGTC
TCCCGGAGTGGGAATCGCGCGTCGAGACAAACCTGCGGCACGTTCTCAAG
ACCGTGCAG
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