mRNA_P-wetherbeei_contig6455.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6455.2.1
Unique NamemRNA_P-wetherbeei_contig6455.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6455.2.1 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.050e-32
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:    1 QGLVAPHVGSFDFFVNEGLPAAVADLPPHEFQAGEGGPTVRLWYAAAAVGYP-TSRDDGIAAGKSLLPRECRERGLTYSAALSATVCFQVDGGDPQRVQRRFGECPVMVRSARCQLREAAP 360
            Q LV  HV SF+ F++EGL  AV DLP  E + GE GP +RLWY +  +GYP  SRD+   +G  L+PRECRER LTY A +   + +Q++G + QRVQRR GECP+MVRS RC L    P
Sbjct:   54 QSLVDAHVNSFNQFLDEGLNDAVLDLPDVELRVGEDGPLMRLWYESVELGYPGRSRDE--TSGAKLVPRECRERNLTYGAPIHVNIAYQLEGSEAQRVQRRLGECPIMVRSKRCHLAGLGP 172
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BLAST of mRNA_P-wetherbeei_contig6455.2.1 vs. uniprot
Match: A0A812YX28_9DINO (DNA-directed RNA polymerase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YX28_9DINO)

HSP 1 Score: 119 bits (298), Expect = 9.230e-29
Identity = 55/123 (44.72%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    7 LVAPHVGSFDFFVNEGLPAAVADLPPHEFQAGEGGPTVRLWYAAAAVGYPTSRDDGIAAGKSLLPRECRERGLTYSAALSATVCFQVDGGDPQRVQRRFGECPVMVRSARCQLREAAPARLAE 375
            L  PHVGSFDF + EGL  AV+D+ P EF+  E GP  R+W  +A +G+P+ +++G      L PRECRERGLTY   L   +  Q+  G  +R+++ F + P+M++S RC+LR+  P +LAE
Sbjct:   29 LARPHVGSFDFLLEEGLSLAVSDIAPREFRLKEDGPVYRMWIESAEIGFPSKKEEG--GDSRLFPRECRERGLTYGGPLVVNLRRQIGDGPEERIRKVFSKVPIMLKSKRCRLRDLTPKQLAE 149
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BLAST of mRNA_P-wetherbeei_contig6455.2.1 vs. uniprot
Match: A0A196SGI8_BLAHN (DNA-directed RNA polymerase subunit beta n=2 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SGI8_BLAHN)

HSP 1 Score: 107 bits (267), Expect = 1.430e-24
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:    7 LVAPHVGSFDFFVNEGLPAAVADLPPHEFQAGEGGPTVRLWYAAAAVGYPTSRDDGIAAGKSLLPRECRERGLTYSAALSATVCFQVDGGDPQRVQRRFGECPVMVRSARCQL 345
            L+ PH+ S++F + +GL  AV DLPP E   G  GP +R W     VGYP   DD +     LLP ECRERG++Y+A L+A +  QV+ G+    +RR G+ P+MV S+ C L
Sbjct:   38 LIRPHIDSYNFMLEKGLSLAVKDLPPMEVSGGSNGPLLRFWIQDVKVGYPIKEDDSMET--RLLPHECRERGISYTAPLTAYIAHQVNDGEVVVTERRLGQLPIMVGSSHCHL 148
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BLAST of mRNA_P-wetherbeei_contig6455.2.1 vs. uniprot
Match: A0A5J4Y5Z6_9CHLO (DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y5Z6_9CHLO)

HSP 1 Score: 106 bits (265), Expect = 2.660e-24
Identity = 56/123 (45.53%), Postives = 77/123 (62.60%), Query Frame = 1 
Query:    7 LVAPHVGSFDFFVNEGLPAAVADLPPHEFQAGEGGPTVRLWYAAAAVGYPTSRDDGIAAGKSLLPRECRERGLTYSAALSATVCFQVDGGDPQRVQRRFGECPVMVRSARCQLREAAPARLAE 375
            LV PHV SFD+F+ +GL   V  L P E        T R+W+ + AVG P  RDDG    + L PR+CRE G+TY+AAL   +C+Q++GG  QR+ R+ G  PVMV+S RC LR  + ++L +
Sbjct:   18 LVKPHVQSFDYFLGDGLTRVVELLEPVEIVHPVTRQTHRIWFESPAVGRPL-RDDGGGRHERLFPRDCREAGITYAAALHIDLCYQLEGGGVQRLNRKLGMLPVMVKSDRCYLRHLSRSQLVQ 139
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BLAST of mRNA_P-wetherbeei_contig6455.2.1 vs. uniprot
Match: A0A7S0MYL5_9CHLO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MYL5_9CHLO)

HSP 1 Score: 101 bits (252), Expect = 9.480e-24
Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:    1 QGLVAPHVGSFDFFVNEGLPAAVADLPPHEFQAGEGGPTVRLWYAAAAVGYPTSRDDGI---AAGKSLLPRECRERGLTYSAALSATVCFQVDGGDPQRVQRRFGECPVMVRSARCQLR 348
            +GLV PH+ SFD+F+++G+   +  L P E        TV LW     VG P   D+G    A    + PRECRE G TY A +  T+C ++  GD +R ++R G  P+MVRS+RC LR
Sbjct:   13 EGLVKPHIESFDYFLDQGIQEVIQHLQPAEIYHAPTRTTVSLWLEDVFVGKPVIEDNGRDTRAVESRMFPRECREAGSTYYAPIFGTICLKIGNGDVERQEKRLGRMPIMVRSSRCHLR 131
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BLAST of mRNA_P-wetherbeei_contig6455.2.1 vs. uniprot
Match: A0A418C808_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418C808_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.830e-23
Identity = 54/124 (43.55%), Postives = 73/124 (58.87%), Query Frame = 1 
Query:    1 QGLVAPHVGSFDFFVNEGLPAAVADLPPHEFQAGEGGPTVRLWYAAAAVGYPTSRDDGIAAGKSLLPRECRERGLTYSAALSATVCFQVDGGDP-QRVQRRFGECPVMVRSARCQLREAAPARL 369
            Q LVAPHV SF+F ++EGL  AVA + P     G G   + +W  +  +GYPTS   G  + K+LLP ECR+RG++Y+A L  T+     GG   + +QR  G  P+MVRS RC L   +P  L
Sbjct:   36 QKLVAPHVDSFNFMLSEGLDYAVASILPLTIDVGHGN-KMTVWIDSVQIGYPTSDATGGHSQKTLLPAECRQRGISYTAPLIVTLARSFVGGSTTEHLQRTVGHIPIMVRSQRCHLANLSPPEL 158
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BLAST of mRNA_P-wetherbeei_contig6455.2.1 vs. uniprot
Match: A0A8J5XRZ5_DIALT (DNA-directed RNA polymerase subunit beta n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XRZ5_DIALT)

HSP 1 Score: 101 bits (252), Expect = 1.510e-22
Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = 1 
Query:    7 LVAPHVGSFDFFVNEGLPAAVADLPPHEFQAGEGGPTVRLWYAAAAVGYPTSRDDGIAAGKSLLPRECRERGLTYSAALSATVCFQVDGGDPQRVQRRFGECPVMVRSARCQLREAAPARLAE 375
            L+APHV SFD+FV +GL AAV  LPP      +GG  ++ W+    VG+PT  +D   +   + P E R+RGL+Y A L   VC + DGG    ++R+ G  PVMVRS RC LR     +L E
Sbjct:   46 LMAPHVQSFDYFVEQGLRAAVDSLPPAFLYLQDGG-MIKWWFKEVYVGFPTKNED--CSDGRMFPSEARQRGLSYRAPLMGKVCVRTDGGAVVELERKLGALPVMVRSVRCHLRGLTQKQLVE 165
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BLAST of mRNA_P-wetherbeei_contig6455.2.1 vs. uniprot
Match: A0A3R7XZQ0_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7XZQ0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.300e-21
Identity = 54/124 (43.55%), Postives = 73/124 (58.87%), Query Frame = 1 
Query:    1 QGLVAPHVGSFDFFVNEGLPAAVADLPPHEFQAGEGGPTVRLWYAAAAVGYPTSRDDGIAAGKSLLPRECRERGLTYSAALSATVCFQVDGGDP-QRVQRRFGECPVMVRSARCQLREAAPARL 369
            Q LVAPHV SF+F ++EGL  AVA + P     G G   + +W  +  +GYPTS   G  + K+LLP ECR+RG++Y+A L  T+     GG   + +QR  G  P+MVRS RC L   +P  L
Sbjct:   36 QKLVAPHVDSFNFMLSEGLDYAVASILPLTIDVGHGN-KMTVWIDSVQIGYPTSDATGGHSQKTLLPAECRQRGISYTAPLIVTLARSFVGGSTTEHLQRTVGHIPIMVRSQRCHLANLSPPEL 158
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BLAST of mRNA_P-wetherbeei_contig6455.2.1 vs. uniprot
Match: A0A6G0W8Q0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8Q0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.320e-21
Identity = 54/124 (43.55%), Postives = 70/124 (56.45%), Query Frame = 1 
Query:    1 QGLVAPHVGSFDFFVNEGLPAAVADLPPHEFQAGEGGPTVRLWYAAAAVGYPTSRDDGIAAGKSLLPRECRERGLTYSAALSATVCFQVDGGDP-QRVQRRFGECPVMVRSARCQLREAAPARL 369
            Q LVAPHV SFDF + EGL  AVA + P     G     + +W  +A +GYPTS D      + LLP ECR+RG++Y+A L  T+     GG   + +QR  G  P+MVRS RC L   +P  L
Sbjct:   36 QRLVAPHVASFDFMIKEGLDLAVASIAPMTIDVGHSS-KMNIWIESAQIGYPTS-DATNGQARLLLPSECRQRGISYTAPLIVTLARSFVGGSTTEHIQRTVGHIPIMVRSQRCHLANMSPPEL 157
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BLAST of mRNA_P-wetherbeei_contig6455.2.1 vs. uniprot
Match: A0A0D2K672_9CHLO (DNA-directed RNA polymerase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2K672_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 1.960e-21
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:    1 QGLVAPHVGSFDFFVNEGLPAAVADLPPHEFQAGEGGPTVRLWYAAAAVGYPTSRDDGIAAGKSLLPRECRERGLTYSAALSATVCFQVDG-GDPQRVQRRFG 306
            + LVAPHV SFD+F+NEGL + V  L P E +        R W+    VG P + +  +AA   L+PR+CRE G+TY A  S  +CF+ DG G  +R+Q+R G
Sbjct:   18 ERLVAPHVASFDWFLNEGLQSVVDSLDPIEIEHPATKRVHRFWFENPIVGRPVNEEASVAADSRLMPRDCREMGVTYKAPFSMDLCFESDGAGGRRRIQKRCG 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6455.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVF9_9STRA4.050e-3252.89DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A812YX28_9DINO9.230e-2944.72DNA-directed RNA polymerase n=1 Tax=Symbiodinium s... [more]
A0A196SGI8_BLAHN1.430e-2444.25DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]
A0A5J4Y5Z6_9CHLO2.660e-2445.53DNA-directed RNA polymerase subunit beta (Fragment... [more]
A0A7S0MYL5_9CHLO9.480e-2441.18DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyr... [more]
A0A418C808_9STRA2.830e-2343.55DNA-directed RNA polymerase (Fragment) n=2 Tax=Aph... [more]
A0A8J5XRZ5_DIALT1.510e-2243.90DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
A0A3R7XZQ0_9STRA1.300e-2143.55DNA-directed RNA polymerase n=1 Tax=Aphanomyces as... [more]
A0A6G0W8Q0_9STRA1.320e-2143.55DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A0D2K672_9CHLO1.960e-2143.69DNA-directed RNA polymerase n=1 Tax=Monoraphidium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6455contigP-wetherbeei_contig6455:1388..2637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LGZ7
Preferred namePOLR1B
PFAMsRNA_pol_Rpa2_4,RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
Model size375
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03002
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007275,GO:0007565,GO:0007566,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009303,GO:0009553,GO:0009561,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0017126,GO:0018130,GO:0019222,GO:0019438,GO:0022414,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0044706,GO:0045793,GO:0045815,GO:0046483,GO:0048229,GO:0048518,GO:0048856,GO:0050789,GO:0051704,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons2
Evalue2.94e-22
EggNOG OGsCOG0085@1|root,KOG0216@2759|Eukaryota
EC2.7.7.6
DescriptionDNA-directed 5'-3' RNA polymerase activity
Cds size375
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186914.775875-CDS-P-wetherbeei_contig6455:1387..14981683186914.775875-CDS-P-wetherbeei_contig6455:1387..1498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6455 1388..1498 -
1683186914.7879226-CDS-P-wetherbeei_contig6455:2373..26371683186914.7879226-CDS-P-wetherbeei_contig6455:2373..2637Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6455 2374..2637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6455.2.1prot_P-wetherbeei_contig6455.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6455 1388..2637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6455.2.1

>prot_P-wetherbeei_contig6455.2.1 ID=prot_P-wetherbeei_contig6455.2.1|Name=mRNA_P-wetherbeei_contig6455.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
QGLVAPHVGSFDFFVNEGLPAAVADLPPHEFQAGEGGPTVRLWYAAAAVG
YPTSRDDGIAAGKSLLPRECRERGLTYSAALSATVCFQVDGGDPQRVQRR
FGECPVMVRSARCQLREAAPARLAE
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mRNA from alignment at P-wetherbeei_contig6455:1388..2637-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6455.2.1 ID=mRNA_P-wetherbeei_contig6455.2.1|Name=mRNA_P-wetherbeei_contig6455.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1250bp|location=Sequence derived from alignment at P-wetherbeei_contig6455:1388..2637- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCCTCGTCGCGCCGCACGTGGGCTCCTTCGATTTCTTCGTGAACGA
GGGGCTGCCGGCGGCGGTCGCAGACCTGCCGCCGCACGAGTTCCAGGCCG
GCGAGGGCGGCCCGACAGTGCGGCTGTGGTACGCCGCGGCCGCCGTGGGC
TACCCGACCTCGAGGGACGACGGCATCGCGGCAGGAAAAAGCCTTCTGCC
GCGCGAATGCCGCGAGCGGGGGCTGACGTACAGCGCCGCGCTCAGCGCGA
CCGTGTGCTTCCAGGTGCGCCACACCCGGCTTTGAAGTTGGATTGTGCGC
CACACCCGGCTTTGAAGTTGGATTGTTTTTTTGTCCTGGGCAGAGTGCTC
TGATGTTAAACGTATTTACCTGTTTTAAGTCCACATTTTTCGATGTTGAT
TATGGCACCCAAAGTCTCTGTGTCGGAGGTTCCAAGCGACACCGTTGTGA
ACGGTTTTGCATGTTGGCCGACGAGTCCATCTCCGTCATCGCGCAATGTG
TGGTGTGTAAGTGCCAGCTGGTGGACGGCGTCGCAGCCGTTGGTCCATTT
CGGGGGCCCCAAAGCTTTCAGGAGGCGGAAGGAATAAGACGAGAATCAGC
AGCATCATGGGGTGTGTTCTCGTGAAAGCTTCGGCTGAAGAAACTTTCTG
GCCGAGCCGCCGCACCAGAAGCGGGCGGGGGCGCGAAACGTCAAGCTCGG
TTCCCTTGCCCTCGTCCTGGAGGCGTGCCTGTTGTTGCTCTTCAGCACCT
TCTGTCATTGTGGACTGATGGGAGTGGGTATGACGGGTGCTTATCGAAGA
TGGGGGCACGGGCGTCCTCTACGTTGGGCACATGCATTTTTTTACGTTTC
GGCTGGCCGGCCGCTTCGTTGTTGGTGCGTGCCCTTGGCCGGGAAGAATT
CCCGGAAGCCGTCTCTTCAAAAGTCGTCTTTTCATCACGATTTCGATTGA
CTCTGTACGTTTGTAGTATTTTTTGGCCAGCTCCACCCCCTCCCAGTTCG
CCCTCTGATCTTGACTTCTCGGCTTCCTCGGTTTCGTTGTGGTGGCGACG
GTCGTGATGGCGGCTGCGGTGACGGCGGCGGCGATGGCGCTGGCGGCGGG
CCCTGCGGCACGGGAAACCACTCGACGAAGAAACCGTAGGTAGACGGCGG
CGACCCGCAGCGGGTGCAGCGGCGCTTCGGCGAGTGCCCCGTCATGGTGC
GGTCGGCGCGCTGTCAGCTGCGCGAGGCCGCGCCCGCCCGGCTGGCGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6455:1388..2637-

>mRNA_P-wetherbeei_contig6455.2.1 ID=mRNA_P-wetherbeei_contig6455.2.1|Name=mRNA_P-wetherbeei_contig6455.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig6455:1388..2637- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCCTCGTCGCGCCGCACGTGGGCTCCTTCGATTTCTTCGTGAACGA
GGGGCTGCCGGCGGCGGTCGCAGACCTGCCGCCGCACGAGTTCCAGGCCG
GCGAGGGCGGCCCGACAGTGCGGCTGTGGTACGCCGCGGCCGCCGTGGGC
TACCCGACCTCGAGGGACGACGGCATCGCGGCAGGAAAAAGCCTTCTGCC
GCGCGAATGCCGCGAGCGGGGGCTGACGTACAGCGCCGCGCTCAGCGCGA
CCGTGTGCTTCCAGGTAGACGGCGGCGACCCGCAGCGGGTGCAGCGGCGC
TTCGGCGAGTGCCCCGTCATGGTGCGGTCGGCGCGCTGTCAGCTGCGCGA
GGCCGCGCCCGCCCGGCTGGCGGAG
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