mRNA_P-wetherbeei_contig6454.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6454.1.1
Unique NamemRNA_P-wetherbeei_contig6454.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6454.1.1 vs. uniprot
Match: A0A2R5GGQ9_9STRA (Ubiquitin-conjugating enzyme E2 C n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGQ9_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.370e-62
Identity = 95/141 (67.38%), Postives = 112/141 (79.43%), Query Frame = 2
Query:  125 EGMSNRLQQELMNLMMSSIDGATAFPDGDNLFQWTATIQGSDKTVYEGLSYKLRMVFPENYPYKAPTITFTTPCFHPNVDDAGAICLDILKDKWSAAYSVSTVLLSLRSLLADPNNDSPLNTQAAEMWENPVEFRKMVLKK 547
            E ++ RLQQELM LM      ATAFPDGDNLF W+  I G+ +TVYEGLSYKL + FP NYPY APTI F TPCFHPNVD  G ICLDILK+KWSA YSVST+L SLRSLL+DPNNDSPLN  AA++W+N  E+++++LKK
Sbjct:   10 ESVTKRLQQELMQLMRDGDSNATAFPDGDNLFSWSGNINGAPETVYEGLSYKLHIDFPSNYPYTAPTIRFVTPCFHPNVDAHGNICLDILKEKWSATYSVSTILTSLRSLLSDPNNDSPLNGVAAQLWDNQEEYKRVLLKK 150          
BLAST of mRNA_P-wetherbeei_contig6454.1.1 vs. uniprot
Match: A0A1Y1VHG7_9FUNG (UBC core domain-containing protein n=4 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1VHG7_9FUNG)

HSP 1 Score: 202 bits (514), Expect = 9.340e-62
Identity = 92/138 (66.67%), Postives = 109/138 (78.99%), Query Frame = 2
Query:  131 MSNRLQQELMNLMMSSIDGATAFPDGDNLFQWTATIQGSDKTVYEGLSYKLRMVFPENYPYKAPTITFTTPCFHPNVDDAGAICLDILKDKWSAAYSVSTVLLSLRSLLADPNNDSPLNTQAAEMWENPVEFRKMVLK 544
            ++ RLQ ELM LMM+ I G +AFP+ DNL  W  TI+G+  TVY GLSYK+ + FP NYPY APTI FTTPCFHPNVD  G ICLDILKDKWSA Y+V T+LLSL+SLL +PNNDSPLNT AA+MW+ P EF+K V+K
Sbjct:    9 VTKRLQNELMQLMMAGIPGVSAFPESDNLLSWVGTIEGAPGTVYHGLSYKISLKFPVNYPYSAPTIKFTTPCFHPNVDSEGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNDSPLNTYAAQMWDKPEEFKKHVIK 146          
BLAST of mRNA_P-wetherbeei_contig6454.1.1 vs. uniprot
Match: D7G9D3_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9D3_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 9.970e-62
Identity = 91/139 (65.47%), Postives = 119/139 (85.61%), Query Frame = 2
Query:  131 MSNRLQQELMNLMMSSIDGATAFPDGDNLFQWTATIQGSDKTVYEGLSYKLRMVFPENYPYKAPTITFTTPCFHPNVDDAGAICLDILKDKWSAAYSVSTVLLSLRSLLADPNNDSPLNTQAAEMWENPVEFRKMVLKK 547
            ++ RLQQELM +MM +  GA+AFP+ DNLF+WTAT+ GS+ T YEGL+YKL++VFP+ YPYKAP ITF TPCFHPNVD+ G ICLDILK+KWS+A+SVST+L SLRSLLADPNN+SPLNT+AA++W +  ++R++  +K
Sbjct:    8 VTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQK 146          
BLAST of mRNA_P-wetherbeei_contig6454.1.1 vs. uniprot
Match: A0A0L0D7X5_THETB (Ubiquitin-conjugating enzyme E2 C n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D7X5_THETB)

HSP 1 Score: 202 bits (513), Expect = 2.090e-61
Identity = 90/139 (64.75%), Postives = 111/139 (79.86%), Query Frame = 2
Query:  131 MSNRLQQELMNLMMSSIDGATAFPDGDNLFQWTATIQGSDKTVYEGLSYKLRMVFPENYPYKAPTITFTTPCFHPNVDDAGAICLDILKDKWSAAYSVSTVLLSLRSLLADPNNDSPLNTQAAEMWENPVEFRKMVLKK 547
            ++ RLQ ELM+LMMS  +G +AFPDGDNLF W  T++G+D TVYEGL YKL + FP +YPY APT+ F TPCFHPNVD  G ICLDILKDKWSA Y+VST+L+S+RSLL +PNNDSPLN  AA +W+N  E+R + +KK
Sbjct:   22 VAKRLQSELMSLMMSGDEGVSAFPDGDNLFHWVGTVKGADGTVYEGLEYKLSLTFPTSYPYSAPTVKFVTPCFHPNVDQYGNICLDILKDKWSAIYNVSTILISIRSLLGEPNNDSPLNGYAAALWDNQTEYRAVNVKK 160          
BLAST of mRNA_P-wetherbeei_contig6454.1.1 vs. uniprot
Match: UPI0006B0F894 (ubiquitin-conjugating enzyme E2 C-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0F894)

HSP 1 Score: 200 bits (509), Expect = 1.500e-60
Identity = 94/139 (67.63%), Postives = 111/139 (79.86%), Query Frame = 2
Query:  131 MSNRLQQELMNLMMSSIDGATAFPDGDNLFQWTATIQGSDKTVYEGLSYKLRMVFPENYPYKAPTITFTTPCFHPNVDDAGAICLDILKDKWSAAYSVSTVLLSLRSLLADPNNDSPLNTQAAEMWENPVEFRKMVLKK 547
            +S RLQQELM LMMS   G +AFPDGDNLF+W  TI G+D TVYEGL YKL + FP +YPY AP I F TPCFHPNVD  G ICLDILK+KW+A Y V TVLLSL+SLL +PN DSPLNT AAE+WENP +++K++L+K
Sbjct:   35 VSKRLQQELMKLMMSGDKGISAFPDGDNLFRWIGTIVGADGTVYEGLIYKLVLEFPSSYPYTAPIIRFDTPCFHPNVDTQGNICLDILKEKWTALYDVRTVLLSLQSLLGEPNIDSPLNTHAAELWENPTQYKKVLLEK 173          
BLAST of mRNA_P-wetherbeei_contig6454.1.1 vs. uniprot
Match: A0A1S3J2X1_LINUN (ubiquitin-conjugating enzyme E2 C-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3J2X1_LINUN)

HSP 1 Score: 199 bits (506), Expect = 3.730e-60
Identity = 90/144 (62.50%), Postives = 114/144 (79.17%), Query Frame = 2
Query:  116 KQAEGMSNRLQQELMNLMMSSIDGATAFPDGDNLFQWTATIQGSDKTVYEGLSYKLRMVFPENYPYKAPTITFTTPCFHPNVDDAGAICLDILKDKWSAAYSVSTVLLSLRSLLADPNNDSPLNTQAAEMWENPVEFRKMVLKK 547
            K    +S RLQQELM+LMMS   G +AFPDGDNLF+W  T+QG++ TVYEGL YKL + FP +YPY AP + F TP FHPNVD  G ICLDILK++WSA Y+V T+L+S+RSLL +PNN+SPLNT AAE+WEN V ++K++L+K
Sbjct:   26 KDTHSVSKRLQQELMSLMMSGETGVSAFPDGDNLFKWVGTLQGAEGTVYEGLKYKLTLDFPSSYPYTAPVVKFDTPIFHPNVDTNGNICLDILKEEWSALYTVKTILISIRSLLGEPNNNSPLNTHAAELWENQVAYKKLLLEK 169          
BLAST of mRNA_P-wetherbeei_contig6454.1.1 vs. uniprot
Match: UPI001E1D6D80 (ubiquitin-conjugating enzyme E2 C-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D6D80)

HSP 1 Score: 198 bits (504), Expect = 7.240e-60
Identity = 92/150 (61.33%), Postives = 113/150 (75.33%), Query Frame = 2
Query:   98 RLLSVEKQAEGMSNRLQQELMNLMMSSIDGATAFPDGDNLFQWTATIQGSDKTVYEGLSYKLRMVFPENYPYKAPTITFTTPCFHPNVDDAGAICLDILKDKWSAAYSVSTVLLSLRSLLADPNNDSPLNTQAAEMWENPVEFRKMVLKK 547
            R  S  K    +S RLQQEL  L+MS   G +AFPDGDNLF+W AT+ G+  T YEGLSYKL + FP  YPY+APT+ F TPC+HPNVD +G ICLDILK+KWSA Y V T+LLSL+SLL +PNN+SPLN QAAE W N  E++K+V++K
Sbjct:   20 RSTSSAKDTHSVSKRLQQELRTLLMSGDPGVSAFPDGDNLFRWVATLIGAKGTAYEGLSYKLSLEFPSGYPYQAPTVKFETPCWHPNVDQSGNICLDILKEKWSALYDVRTILLSLQSLLGEPNNESPLNAQAAEQWNNQTEYKKIVVEK 169          
BLAST of mRNA_P-wetherbeei_contig6454.1.1 vs. uniprot
Match: A0A5J4Y1P3_9CHLO (Ubiquitin-conjugating enzyme E2 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y1P3_9CHLO)

HSP 1 Score: 197 bits (502), Expect = 1.230e-59
Identity = 89/146 (60.96%), Postives = 118/146 (80.82%), Query Frame = 2
Query:  122 AEGMSNRLQQELMNLMMSSIDGATAFPDGDNLFQWTATIQGSDKTVYEGLSYKLRMVFPENYPYKAPTITFTTPCFHPNVDDAGAICLDILKDKWSAAYSVSTVLLSLRSLLADPNNDSPLNTQAAEMWENPVEFRKMVLKKAAAA 559
            +  ++ RLQ ELM+LM ++  G +AFPDGD+LF W  TIQG+  TVYEG+SYKL + FP +YP+KAPT+ F TPCFHPN+D  G ICLDILKDKWSAAYSV TVLLS++SLL +PNNDSPLN+ AA++WE+  +++++++KK A A
Sbjct:   27 SHAVTKRLQSELMSLMSATDPGVSAFPDGDSLFSWVGTIQGAADTVYEGMSYKLSLKFPTDYPFKAPTVKFETPCFHPNIDQYGNICLDILKDKWSAAYSVRTVLLSIQSLLGEPNNDSPLNSYAAKLWESQEDYKRVLIKKYAEA 172          
BLAST of mRNA_P-wetherbeei_contig6454.1.1 vs. uniprot
Match: A0A0L0HNL0_SPIPD (UBC core domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HNL0_SPIPD)

HSP 1 Score: 197 bits (501), Expect = 1.440e-59
Identity = 92/137 (67.15%), Postives = 108/137 (78.83%), Query Frame = 2
Query:  131 MSNRLQQELMNLMMSSIDGATAFPDGDNLFQWTATIQGSDKTVYEGLSYKLRMVFPENYPYKAPTITFTTPCFHPNVDDAGAICLDILKDKWSAAYSVSTVLLSLRSLLADPNNDSPLNTQAAEMWENPVEFRKMVL 541
            ++ RLQ ELM+LMM+ I G +AFPD D+L  WTATI G+  TVYEGL YKL M FP  YPY APT+TF TPCFHPNVD  G ICLDILKDKWSA Y+V T+L+SL+SLL +PNNDSPLN +AAE+W+ P  FRK VL
Sbjct:   24 VAKRLQNELMSLMMAGIPGISAFPDADDLTCWTATIHGAPGTVYEGLKYKLSMKFPATYPYNAPTVTFKTPCFHPNVDMNGGICLDILKDKWSAVYTVQTILVSLQSLLGEPNNDSPLNNEAAELWDQPDLFRKQVL 160          
BLAST of mRNA_P-wetherbeei_contig6454.1.1 vs. uniprot
Match: C1MIV7_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MIV7_MICPC)

HSP 1 Score: 196 bits (497), Expect = 7.210e-59
Identity = 87/142 (61.27%), Postives = 113/142 (79.58%), Query Frame = 2
Query:  122 AEGMSNRLQQELMNLMMSSIDGATAFPDGDNLFQWTATIQGSDKTVYEGLSYKLRMVFPENYPYKAPTITFTTPCFHPNVDDAGAICLDILKDKWSAAYSVSTVLLSLRSLLADPNNDSPLNTQAAEMWENPVEFRKMVLKK 547
            ++ ++ RLQ ELM+LM S+  G +AFPDGDN+F W  TI+G+  T YEGL+YKL + FP +YP+KAPT+ F TPCFHPNVD  G ICLDILK+KWSA Y+V T+LLS++SLL +PNN SPLN QAA+MWEN  E++K++ KK
Sbjct:   28 SQAVARRLQSELMSLMTSADAGISAFPDGDNIFNWVGTIEGAVGTAYEGLTYKLSLAFPNDYPFKAPTVKFETPCFHPNVDQFGNICLDILKEKWSAVYNVRTILLSIQSLLGEPNNASPLNAQAAQMWENQTEYKKVLHKK 169          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6454.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R5GGQ9_9STRA1.370e-6267.38Ubiquitin-conjugating enzyme E2 C n=1 Tax=Hondaea ... [more]
A0A1Y1VHG7_9FUNG9.340e-6266.67UBC core domain-containing protein n=4 Tax=Neocall... [more]
D7G9D3_ECTSI9.970e-6265.47UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A0L0D7X5_THETB2.090e-6164.75Ubiquitin-conjugating enzyme E2 C n=1 Tax=Thecamon... [more]
UPI0006B0F8941.500e-6067.63ubiquitin-conjugating enzyme E2 C-like n=1 Tax=Lim... [more]
A0A1S3J2X1_LINUN3.730e-6062.50ubiquitin-conjugating enzyme E2 C-like n=1 Tax=Lin... [more]
UPI001E1D6D807.240e-6061.33ubiquitin-conjugating enzyme E2 C-like n=1 Tax=Mer... [more]
A0A5J4Y1P3_9CHLO1.230e-5960.96Ubiquitin-conjugating enzyme E2 n=1 Tax=Trebouxia ... [more]
A0A0L0HNL0_SPIPD1.440e-5967.15UBC core domain-containing protein n=2 Tax=Spizell... [more]
C1MIV7_MICPC7.210e-5961.27Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6454contigP-wetherbeei_contig6454:2137..3309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G9D3
Preferred nameUBE2C
PFAMsUQ_con
Model size959
Max annot lvl2759|Eukaryota
KEGG koko:K06674,ko:K06688,ko:K08707
KEGG Pathwayko04111,ko04120,map04111,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007096,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010458,GO:0010498,GO:0010564,GO:0010604,GO:0010638,GO:0010948,GO:0010965,GO:0010992,GO:0010994,GO:0016020,GO:0016043,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022607,GO:0030071,GO:0030163,GO:0031145,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031536,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034622,GO:0036211,GO:0042176,GO:0042592,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045930,GO:0045931,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051258,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0070979,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090231,GO:0090233,GO:0090266,GO:0140014,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901976,GO:1901977,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902426,GO:1902494,GO:1903047,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903504,GO:1904666,GO:1904668,GO:1905818,GO:1905820,GO:1990234,GO:2001252
Exons2
Evalue4.81e-65
EggNOG OGsCOG5078@1|root,KOG0421@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-28_000490.1
EC2.3.2.23
Descriptionanaphase-promoting complex-dependent catabolic process
Cds size462
COG categoryO
BRITEko00000,ko00001,ko01000,ko03036,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186914.7145982-UTR-P-wetherbeei_contig6454:2136..22661683186914.7145982-UTR-P-wetherbeei_contig6454:2136..2266Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6454 2137..2266 +
1683186914.7465649-UTR-P-wetherbeei_contig6454:2942..33091683186914.7465649-UTR-P-wetherbeei_contig6454:2942..3309Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6454 2943..3309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186914.7271082-CDS-P-wetherbeei_contig6454:2266..23951683186914.7271082-CDS-P-wetherbeei_contig6454:2266..2395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6454 2267..2395 +
1683186914.7353938-CDS-P-wetherbeei_contig6454:2609..29421683186914.7353938-CDS-P-wetherbeei_contig6454:2609..2942Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6454 2610..2942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6454.1.1prot_P-wetherbeei_contig6454.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6454 2267..2942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6454.1.1

>prot_P-wetherbeei_contig6454.1.1 ID=prot_P-wetherbeei_contig6454.1.1|Name=mRNA_P-wetherbeei_contig6454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
MSNRLQQELMNLMMSSIDGATAFPDGDNLFQWTATIQGSDKTVYEGLSYK
LRMVFPENYPYKAPTITFTTPCFHPNVDDAGAICLDILKDKWSAAYSVST
VLLSLRSLLADPNNDSPLNTQAAEMWENPVEFRKMVLKKAAAAGEFPTGA
AGV*
back to top

mRNA from alignment at P-wetherbeei_contig6454:2137..3309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6454.1.1 ID=mRNA_P-wetherbeei_contig6454.1.1|Name=mRNA_P-wetherbeei_contig6454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1173bp|location=Sequence derived from alignment at P-wetherbeei_contig6454:2137..3309+ (Phaeothamnion wetherbeei SAG_119_79)
GCAAAAAGAGCATCCACAGCCAAGAGAAGAGAACGAGCAGGCGACACATT CTAGAGCACAAAGGAAGCACAGCAACACCTCTTCCTGCCGCTTGTCTCGC TTGCTGTCCGTCGAGAAACAAGCAGAGGGTATGTCGAACCGACTGCAGCA GGAGCTCATGAATCTGATGATGTCTTCCATCGACGGAGCGACTGCCTTTC CCGACGGCGACAATCTCTTCCAATGGACAGCGACGATACAGGGCAGCGAC AAGACGGTGGTAAGCGAACGGTATTGCTTTAGTATTTGAGCGGAACGATG CTGCCCTTTAGTCGCCTTCATTTCATCGTGTTCCGTCGTGTTATGTTCCT CCAACTTATTCGCTGTCTACATTCCTTTGAGAGATTTCTTGAAATGTTTG CAATCACCGTTGCTAGACACTGGGCCAGTCCAAGCTGCTGCCCCCCTTCC CCCTTCCTAAAAAACTTACGCAGTACGAAGGCTTGAGCTACAAGCTGCGG ATGGTCTTCCCCGAGAACTACCCTTACAAAGCGCCTACCATCACATTCAC AACGCCGTGCTTCCACCCGAATGTCGACGACGCAGGCGCCATCTGCCTCG ACATCTTGAAGGACAAGTGGTCGGCCGCCTACTCCGTCTCGACCGTCCTG CTGTCCCTGCGGTCTCTGCTGGCGGATCCCAACAACGACTCGCCGCTGAA CACGCAAGCCGCCGAGATGTGGGAGAATCCTGTCGAATTCAGAAAAATGG TGCTAAAGAAGGCGGCCGCCGCCGGCGAATTCCCCACTGGTGCAGCCGGC GTATGATGTTCTCGGTTTCAAGCGGGCAGGGAGAGGCGGCGGTGAATCCA GGGCGGCGGCTATGCAACAGTACGGCAGTAGACGATGATGGCGAGAGGCG ACAGTGTCTGCGACGGCAGGCGACAGCGGCGGTGGTTTCAAAGACAGCTG CGGCGAATGAAGGCAACGGCAGCGGTGGCGGTGTTTGCATTGCGGCCTCC GCCGGTATCATACTCAATATTACACATTCCCACAGCTACAATAATCAAAG CCGGGCGACTCCTTGACACCGTCCAGCCAGAAGGCAAGTTGCGGGTAGGG CTACGCTACCCTTCCGTTGCAGGAGGAAAATAGGGGCCCGATTGTTGACC CTTGCGTCTGATGCCGTGAAGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6454:2137..3309+

>mRNA_P-wetherbeei_contig6454.1.1 ID=mRNA_P-wetherbeei_contig6454.1.1|Name=mRNA_P-wetherbeei_contig6454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig6454:2137..3309+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGAACCGACTGCAGCAGGAGCTCATGAATCTGATGATGTCTTCCAT
CGACGGAGCGACTGCCTTTCCCGACGGCGACAATCTCTTCCAATGGACAG
CGACGATACAGGGCAGCGACAAGACGGTGTACGAAGGCTTGAGCTACAAG
CTGCGGATGGTCTTCCCCGAGAACTACCCTTACAAAGCGCCTACCATCAC
ATTCACAACGCCGTGCTTCCACCCGAATGTCGACGACGCAGGCGCCATCT
GCCTCGACATCTTGAAGGACAAGTGGTCGGCCGCCTACTCCGTCTCGACC
GTCCTGCTGTCCCTGCGGTCTCTGCTGGCGGATCCCAACAACGACTCGCC
GCTGAACACGCAAGCCGCCGAGATGTGGGAGAATCCTGTCGAATTCAGAA
AAATGGTGCTAAAGAAGGCGGCCGCCGCCGGCGAATTCCCCACTGGTGCA
GCCGGCGTATGA
back to top