mRNA_P-wetherbeei_contig645.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig645.4.1 vs. uniprot
Match: A0A6H5JV52_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV52_9PHAE) HSP 1 Score: 152 bits (385), Expect = 5.170e-36 Identity = 167/458 (36.46%), Postives = 213/458 (46.51%), Query Frame = 1
Query: 1 LTHRGLMNTGNACFRSAILQALLALESFASTVLAARELLNDPIAAA-ALPTWAELCRFAAAFEEPVPASSSIGSXXXXXXXXXAWASVQRTKGKKGGRSGFGA----------SLDAVVAEDALATTFAAFRGQNPGQQEDAHEFFAFLIDRLHEELVTARKAHSTRSSRTVRAIEHNAWGTPSGGGDAGAAAGVGAA-------------DHWQEVGKGGTRAVVNNPP-------------------------------------FQCLQLDLE-PAAPPPSV---PPPGTGRGVPLRVCP-------------AXXXXXXXXXXXXXXXXXXXXXXRGAWNTDGAAGXXXXXPAVGAAGTTAGAPMSATGAGPRGGAGSVHEALAAFFSGEVLDGVKGGHNVEVKALKSVSLDRLPHFLTLHLKQFFFDQLRGPRKLCKPVLFPTTLEIPATLLS 1140
L HRGL+NTGN+CFR+A+LQALLA E F + A L D I A ALPTWA+L RFAAAFE P P ++ AW++ GGR + + V+ ++A++ F AFR + G+QEDA EF AF +D+LHEE+V A+K +S GGD G +A G D W EVGKGG +AVVN P F CLQLDL+ P++P P P TG G + XXXXXXXXXXXXXXXXX XXXXX GT AP + G + AL+A F GE + GVKG N+EVKA ++++L++ P LTLHLKQF F GPRKL + V +P L +P ++S
Sbjct: 248 LVHRGLINTGNSCFRNAVLQALLACEPFVQVLFRAAPGLRDSIPAKEALPTWAQLARFAAAFEPPKPGDAAPLGSGGSSSAKGAWSTA-------GGRXXXXXXXXXXXXXXXAAEPVLPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIVDAKKNKPKPASD---------------GGDRGGSADSGTXXXXXXXXXXXXEDDAWLEVGKGGAKAVVNAPDPRKKVSNSSVVTGLFYGMFRSEVKKSGNAKSSVTLEAFHCLQLDLDLPSSPSPRNNIWPETFTGGGXXXXXXXXXAWGSGTGGFDSSNGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTVPPAPGA--------GVTVLEAALSALFGGEAVAGVKGKRNLEVKASRTLTLEQAPKVLTLHLKQFSFHPELGPRKLARRVRYPLELTVPTLVMS 675
BLAST of mRNA_P-wetherbeei_contig645.4.1 vs. uniprot
Match: D7FJX3_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX3_ECTSI) HSP 1 Score: 138 bits (348), Expect = 3.640e-31 Identity = 156/436 (35.78%), Postives = 205/436 (47.02%), Query Frame = 1
Query: 1 LTHRGLMNTGNACFRSAILQALLALESFASTVLAARELLNDPIAAA-ALPTWAELCRFAAAFEEPVPASSS---IGSXXXXXXXXXAWASVQRTKGKKGGRSGFGASLDAVVAEDALATTFAAFRGQNPGQQEDAHEFFAFLIDRLHEELVTARKAHSTRSSRTVRAIEHNAWGTPSGGGDAGAAA------------GVGAADH-WQEVGKGGTRAVVNNPP---------FQCLQLDLEPAAPPPSVPPPGTGRGVPLRVCPAXXXXXXXXXXXXXXXXXXXXXXRGAWNTDGAAGXXXXXPAVGAAGTTA------------------------------GAPMSATGAGPRGGAGSVHEALAAFFSGEVLDGVKGGHNVEVKALKSVSLDRLPHFLTLHLKQFFFDQLRGPRKLCKPVLFPTTLEIPATLLS 1140
L HRGL+NTGN+CFR+A+LQALLA E F + A L D + A ALPTWA+L RFAAAFE P P +++ XXXXXXXXX + V+ ++A++ F AFR + G+QEDA EF AF +D+LHEE+V A+K + +S GG G +A G G D W EVGKGG +AVVN P ++ + +++ P S +P P XXXXXXXX G D + GXXXXX G GA A GAG + AL+A F GE + GVKG N+EVKA ++++L++ P LTLHLKQF F GPRKL + V +P L +P ++S
Sbjct: 281 LVHRGLINTGNSCFRNAVLQALLACEPFVQVLFRAAPGLRDSVPAREALPTWAQLARFAAAFEPPKPGAAAPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEPVLPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIVDAKKNNPKPASD---------------GGSGGVSADXXXXXXXXXXXGEGEEDDAWLEVGKGGAKAVVNAPDPRKKVTGLFYRMFRSEVKKNGNPQSSVTLELDLDLPSSTSPQNNIWTETVSGXXXXXXXXAWGS-GTGGFDSSNGXXXXXXXXEEGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVPPAPGAGVT----VLESALSALFGGEAVAGVKGKRNLEVKASRTLTLEQAPKVLTLHLKQFSFHPELGPRKLARRVRYPLELTVPTLVMS 696
BLAST of mRNA_P-wetherbeei_contig645.4.1 vs. uniprot
Match: A0A836CGA5_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA5_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.290e-22 Identity = 117/425 (27.53%), Postives = 153/425 (36.00%), Query Frame = 1
Query: 1 LTHRGLMNTGNACFRSAILQALLALESFASTVLA--ARELLNDPIAAAALPTWAELCRFAAAFEEPVPASSSIGSXXXXXXXXXAWASVQRTKGKKGGRSGFGASLDAVVAEDALATTFAAFRGQNPGQQEDAHEFFAFLIDRLHEELVTARKAHSTRSSRTVRAIEHNAWGTPSGGGDAGAAAGVGAADHWQEVGKGGTRAVVNNP----------------------------------------PFQCLQLDLEPAAPPPSVPPPGTG-RGVPLRVCPAXXXXXXXXXXXXXXXXXXXXXXRGAWNTDGAAGXXXXXPAVGAAGTTAGAPMSATGAGPRGGAGSVHEALAAFFSGEVLDGVKGGHNVEVKALKSVSLDRLPHFLTLHLKQFFFDQLRGPR-KLCKPVLFPTTLEIPATLLSA 1143
L RG++NTGN C+R A+LQ+LLA A VLA AR LL P AA +PTW L +F F W GK AV +D L +FRG G+QEDA EF A+ + +LH+E+ K + + + ++ A D WQEVG+GG AVVN PF CLQL + P PP+ PP G RG P R P + LAAFF GEVL+GV+GG V+A + +L+ LP LTL LKQ+ F + G + +P+ +P L IP L A
Sbjct: 119 LACRGMVNTGNTCYRLAVLQSLLACAPLAEAVLARPARRLLAAPAAAEHVPTWTALAQFWREF----------------------WGIGAANAGK------------AVNPQDTLRQVLGSFRGAVAGEQEDAEEFLAYFLGKLHDEVERLVKKQA-KDAEQHAVLQQAAVD-----------------DEWQEVGRGGVAAVVNRQAEARAAAVESVITRVFHGTLRSEASHTSQLGRAPLSVMVEPFHCLQLPVPPPDAPPARPPAGGSYRGAPHRPPPL----------------------------------------------------------------QLEAMLAAFFGGEVLEGVRGGGRGVVRAQRQSALESLPRVLTLQLKQYAFHRAHGTALRTGRPIAYPLELRIPDAHLGA 427
BLAST of mRNA_P-wetherbeei_contig645.4.1 vs. uniprot
Match: W7TN80_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN80_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 9.610e-11 Identity = 63/195 (32.31%), Postives = 83/195 (42.56%), Query Frame = 1
Query: 7 HRGLMNTGNACFRSAILQALLALESFASTVLAARELL---NDPIAA----------AALPTWAELCRFAAAFEEPVPASSSIGSXXXXXXXXXAWASVQRTKGKK---------------------GGRSGFGAS--------------LDAVVAEDALATTFAAFRGQNPGQQEDAHEFFAFLIDRLHEELVTA 447
HRGL+N GN CF++ +LQALLA E +L R L+ + P + A +PTW ++ + A A E+P ++S S A R GKK G +GF L + +D L F AFR G+QEDA EF AFL+DRLHEE V A
Sbjct: 133 HRGLVNAGNTCFQNLVLQALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSFPPLPSHPSGVANGFKLRGPLEARSPSPRDFYLAPLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGA 327
BLAST of mRNA_P-wetherbeei_contig645.4.1 vs. uniprot
Match: A0A4D9D9D9_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9D9_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.040e-10 Identity = 64/196 (32.65%), Postives = 84/196 (42.86%), Query Frame = 1
Query: 7 HRGLMNTGNACFRSAILQALLALESFASTVLAARELL---NDPIAA----------AALPTWAELCRFAAAFEEPVPASSSIGSXXXXXXXXXAWASVQRTKGKK----------------------GGRSGFGAS--------------LDAVVAEDALATTFAAFRGQNPGQQEDAHEFFAFLIDRLHEELVTA 447
HRGL+N GN CF++ +LQALLA E +LA R L+ + P + A +PTW ++ + A A E+P ++S S A R GKK G +GF L + +D L F AFR G+QEDA EF AFL+DRLHEE V A
Sbjct: 226 HRGLVNAGNTCFQNLVLQALLASEPLHRLLLALRPLVLASSSPASPSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSSFPPLPSHPSGVANGFKLHGPLEARSPSPRDFYLAPLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGA 421
BLAST of mRNA_P-wetherbeei_contig645.4.1 vs. uniprot
Match: A0A8J4EVJ3_9CHLO (USP domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EVJ3_9CHLO) HSP 1 Score: 57.8 bits (138), Expect = 5.130e-5 Identity = 69/254 (27.17%), Postives = 94/254 (37.01%), Query Frame = 1
Query: 1 LTHRGLMNTGNACFRSAILQALLALESFASTVLAARELLNDPIAAAALPTWAELCRFAAAFEEPVPASS---SIGSXXXXXXXXX------AWASVQRTKGKKGGRSGFGASLDAVVAEDALATTFA----AFRGQNPG----------------------------------------------QQEDAHEFFAFLIDRLHEELVTARKAHSTRSSRTVRAIEHNAWGTPSGGGDAGAAAGVGAADHWQEVGK 585
L RGL NTGN CF +A +QALLA FA VL+ + + + PT L F P ++ S GS WA VQ +GKKG R G A+ A + T A +G+ PG +Q+DA EFF FL++++HEE+V RKAH + A GT +GG + W +VG+
Sbjct: 1699 LQPRGLTNTGNTCFINATMQALLACAPFAF-VLSRLPTIAPLLEPSKSPTLHSLALFLGELVSPQSGAAGFVSAGSMASGREDAQQAAEDEGWAEVQSHRGKKGQRKGTSANAPQQPASPMVPATATSSSIATKGEAPGSVAVVLGGQPLVPSMLNGIVAAFNPRISIAERQTMSKVLSKGVVEQEQQDAQEFFLFLVNQVHEEVVALRKAHGLAAEPAATA------GTGAGGDG----------EEWAQVGR 1935 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig645.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig645.4.1 >prot_P-wetherbeei_contig645.4.1 ID=prot_P-wetherbeei_contig645.4.1|Name=mRNA_P-wetherbeei_contig645.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=400bp MNTGNACFRSAILQALLALESFASTVLAARELLNDPIAAAALPTWAELCRback to top mRNA from alignment at P-wetherbeei_contig645:6972..9141+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig645.4.1 ID=mRNA_P-wetherbeei_contig645.4.1|Name=mRNA_P-wetherbeei_contig645.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2170bp|location=Sequence derived from alignment at P-wetherbeei_contig645:6972..9141+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig645:6972..9141+ >mRNA_P-wetherbeei_contig645.4.1 ID=mRNA_P-wetherbeei_contig645.4.1|Name=mRNA_P-wetherbeei_contig645.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1200bp|location=Sequence derived from alignment at P-wetherbeei_contig645:6972..9141+ (Phaeothamnion wetherbeei SAG_119_79)back to top |