mRNA_P-wetherbeei_contig6439.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6439.1.1
Unique NamemRNA_P-wetherbeei_contig6439.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6439.1.1 vs. uniprot
Match: A0A6H5LGK6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LGK6_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 9.870e-41
Identity = 141/381 (37.01%), Postives = 191/381 (50.13%), Query Frame = 3 
Query:  192 MATSDKLPPSLPGLEATFTISSGLPPLVGGPLLGEVQLCLPALYLKPGVIKPVLPLGRNARQHAQTAAAHAAVLSRHRHQQQLQPPQRVVYLVRVRWWGEAGPGTILKPREVERRQDAADCPTHDVLDRATCALFPVRADAASIRTYLEDMGHLALDILAGDGT----ARQVGRCVLPLSQQPMSDDGGDRGA------LAHGAFPVLAAGSNVYAGELRVRLRVNLGPRRSALLRCIAAGAR-----ASAALDGAETERQLRAMGQLPPLPPVAEDAPPGREVTVAAAACGGF--SGADWAGLDASRGSLDSAP-------AMPPAAAGAE--------PSFSFQLNEALTDFDDADVLPVWPTPSGRLYAPPEAHGEAI 1238
            +A+  +  P   G++  FT+SS LPP+V G + GE++L +P LY KPGV+                        +R+    Q +P    +++VR++WWG++GPGT+ KP  + RR +  +      L +ATCALFPVR     + TYL DMG + LD+L  +G     AR  GRCV+P+     S  G D+G+      +A G FPVL+     YAG+L V LR  LG  RS+ LR + A A+     A  +    E  +++ A G  P        A  G E      +  GF  SG    GL   R S DSA        A PP  A A         P  SFQLNEAL  FD +D LP+WPTP G LY PPEA G+A+
Sbjct:    3 LASGARRAPEPDGID--FTLSSSLPPMVAGSVAGEMELSVPYLYPKPGVL----------------------CSTRYLRDGQNEP----MFVVRMKWWGDSGPGTVFKPGLLRRRDEDGERACKAQLSKATCALFPVRCALDGLLTYLTDMGSIVLDVLVHEGGPSGGARHAGRCVVPVGGS--SWGGHDQGSRRESRVVAEGYFPVLSLRDGRYAGDLGVCLRACLG--RSSKLRTVLAVAKMATTTADESSPAGEGGKKI-AHGGTPFADRSGSTAARGEEADAGRRSGLGFRRSGEANGGLP-ERASFDSADLTNGWSEAPPPGDAAATERLALDSAPLSSFQLNEALAQFDASDTLPIWPTPRGSLYHPPEALGQAL 349
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BLAST of mRNA_P-wetherbeei_contig6439.1.1 vs. uniprot
Match: UPI001EB053E4 (C2 domain-containing protein 3-like isoform X1 n=4 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB053E4)

HSP 1 Score: 59.3 bits (142), Expect = 2.980e-5
Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 3 
Query:  465 LVRVRWWGEAGPGTILKPREVERRQDAADCPTHDVLDRATCALFPVRADAASIRTYLEDMGHLALDILAGDGTARQVGRCVLP 713
            LVR++WWGE G G+I KP  V ++ D + C         T A +PVR+       YL DMG L L++++G   A  +G+  +P
Sbjct:   61 LVRIKWWGEPGDGSIFKPLNV-KKGDKSGC--------QTTARYPVRSGPRQFAAYLSDMGALTLEVMSGQ-LAAPIGQAEVP 133
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BLAST of mRNA_P-wetherbeei_contig6439.1.1 vs. uniprot
Match: UPI001B889DA0 (C2 domain-containing protein 3-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889DA0)

HSP 1 Score: 57.8 bits (138), Expect = 8.860e-5
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 3 
Query:  465 LVRVRWWGEAGPGTILKPREVERRQDAADCPTHDVLDRATCALFPVRADAASIRTYLEDMGHLALDILAG 674
            LVR++WWGE G G+I KP +V++ +              T A +PVR+       YL+DMG + +D+L+G
Sbjct:   61 LVRIKWWGEHGEGSIFKPLDVKKGEKGPS---------RTTARYPVRSGPRQFAAYLDDMGSMCIDVLSG 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6439.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LGK6_9PHAE9.870e-4137.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI001EB053E42.980e-537.35C2 domain-containing protein 3-like isoform X1 n=4... [more]
UPI001B889DA08.860e-537.14C2 domain-containing protein 3-like n=1 Tax=Gigant... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6439contigP-wetherbeei_contig6439:1053..3435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4787.PITG_07074T0
Model size2087
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.66e-07
EggNOG OGs2CRP9@1|root,2R8NI@2759|Eukaryota,3QHCU@4776|Peronosporales
Cds size1896
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186913.6495035-UTR-P-wetherbeei_contig6439:1052..12431683186913.6495035-UTR-P-wetherbeei_contig6439:1052..1243Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6439 1053..1243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186913.6607916-CDS-P-wetherbeei_contig6439:1243..16961683186913.6607916-CDS-P-wetherbeei_contig6439:1243..1696Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6439 1244..1696 +
1683186913.6704829-CDS-P-wetherbeei_contig6439:1992..34351683186913.6704829-CDS-P-wetherbeei_contig6439:1992..3435Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6439 1993..3435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6439.1.1prot_P-wetherbeei_contig6439.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6439 1244..3435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6439.1.1

>prot_P-wetherbeei_contig6439.1.1 ID=prot_P-wetherbeei_contig6439.1.1|Name=mRNA_P-wetherbeei_contig6439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=632bp
MATSDKLPPSLPGLEATFTISSGLPPLVGGPLLGEVQLCLPALYLKPGVI
KPVLPLGRNARQHAQTAAAHAAVLSRHRHQQQLQPPQRVVYLVRVRWWGE
AGPGTILKPREVERRQDAADCPTHDVLDRATCALFPVRADAASIRTYLED
MGHLALDILAGDGTARQVGRCVLPLSQQPMSDDGGDRGALAHGAFPVLAA
GSNVYAGELRVRLRVNLGPRRSALLRCIAAGARASAALDGAETERQLRAM
GQLPPLPPVAEDAPPGREVTVAAAACGGFSGADWAGLDASRGSLDSAPAM
PPAAAGAEPSFSFQLNEALTDFDDADVLPVWPTPSGRLYAPPEAHGEAIV
AAASAAARSTSRAGGTAPGRTAASAAAGAPAAEKRISSPERRGRASGGRG
ERHDDGGETRRRGGGVATGAAAETATAAATAAGTASAIAFGATAPLPRGG
PARGSRSRSPGPVPSAASRAANAAASCIGGESGGGGGGDGNDGNDGGKRD
TEGDGNDGGGEEDTIEEGVLLAALLNRGEQLRQRLDAVAGASAASAGVPS
AGSGGTTAAAIPGAAGDAGDTLPPQLWPLSNAAAVSGMAAGTEGDIPVSH
DVPSSGSDDGGGSDGDSGVGGGVSGWGAYGLA
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mRNA from alignment at P-wetherbeei_contig6439:1053..3435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6439.1.1 ID=mRNA_P-wetherbeei_contig6439.1.1|Name=mRNA_P-wetherbeei_contig6439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2383bp|location=Sequence derived from alignment at P-wetherbeei_contig6439:1053..3435+ (Phaeothamnion wetherbeei SAG_119_79)
ACAAAAATTCACCTCAGCCACGAAGGCCAGTGCGCCGAAGCAGAGACAGG
GTACGCGAGAACTCAGCGGGGCGGATAGACTATGCAATAAAGAAGTACCC
TTCGATATCCCTTTTCGATTTTTTCAAATCTGAAGACACTCCATGAACGC
GAGCTCAGCGAGCGTTTAAAGGGAGGCTAATCCTCTCGCAAATGGCCACT
TCTGACAAGCTGCCACCCTCGCTTCCCGGCCTGGAAGCGACCTTCACGAT
TTCCTCAGGGCTTCCGCCCCTCGTCGGGGGGCCTCTGCTCGGCGAGGTGC
AGCTGTGCCTGCCCGCGCTCTACCTCAAGCCGGGAGTCATCAAACCGGTG
CTGCCACTCGGCAGAAACGCGCGGCAGCACGCACAGACGGCGGCGGCGCA
TGCCGCAGTGCTCTCGCGGCACCGCCACCAGCAGCAGCTGCAGCCGCCGC
AGCGCGTTGTCTACCTGGTGCGCGTGCGATGGTGGGGCGAGGCCGGCCCG
GGAACGATCCTCAAGCCGCGGGAGGTGGAGCGGCGCCAGGACGCGGCTGA
CTGCCCGACCCACGATGTTCTGGACCGGGCCACTTGCGCGCTGTTTCCTG
TACGGGCCGACGCCGCCAGCATCCGCACCTACCTCGAAGATATGGTGCGC
GTCTGCTTTCTCTCTTTTCTTCATTCTATCCTATCTTTTGCATTTGTCTT
GCTTTTTTCTGCACGAGGCATTCCATTTCTTTCAATGTTCGACTCTTTTT
TCCAGCATATTTCCGCTGCGCCGCGTTCCCTTACTTCTTAAGAGATGGTT
CGCCCCGTTTGCTTGCTCCGTCTATCCTGTCCTTTCCAAGGAAACCACTA
CTCATCGGTTTTTTGACATGAGGTCACCATATGCTTCATCGCTTGTGTAT
TTTGTTTCCGTTCATGTTTTCCCGCGTGTCTTCCTGCCAGGGCCACCTCG
CCCTCGACATTTTGGCGGGCGACGGCACGGCGCGCCAGGTTGGCCGCTGC
GTTCTTCCGCTCTCCCAACAGCCCATGTCAGACGACGGCGGCGACCGCGG
CGCCCTGGCGCACGGCGCCTTCCCCGTCCTGGCGGCGGGCTCCAATGTAT
ACGCCGGCGAATTGCGCGTCCGCCTCCGCGTGAACCTCGGCCCCCGCCGC
AGCGCGCTGTTGCGGTGTATCGCCGCCGGCGCCCGCGCCTCGGCGGCGCT
CGACGGCGCGGAGACGGAGCGGCAGCTCCGCGCGATGGGGCAGCTGCCGC
CGCTGCCGCCGGTGGCGGAGGATGCGCCGCCAGGGCGGGAAGTGACGGTG
GCGGCTGCGGCATGCGGAGGGTTCTCGGGCGCGGACTGGGCGGGGCTGGA
CGCGTCGCGCGGCAGTTTGGATTCTGCGCCCGCCATGCCACCGGCGGCGG
CGGGAGCGGAGCCGTCCTTCTCGTTCCAGCTGAACGAGGCGCTTACCGAC
TTTGACGACGCCGATGTGCTGCCGGTGTGGCCGACGCCGTCCGGAAGACT
GTACGCGCCGCCGGAAGCGCACGGCGAAGCGATCGTGGCGGCGGCATCGG
CGGCGGCGCGATCAACGAGCAGAGCCGGGGGAACGGCACCGGGGAGAACG
GCGGCGTCAGCAGCGGCAGGGGCACCTGCAGCTGAAAAGCGAATCTCGTC
GCCGGAACGGCGAGGAAGAGCGTCCGGCGGGAGGGGAGAGCGGCACGACG
ACGGCGGAGAGACACGCCGCCGCGGGGGCGGAGTAGCAACGGGTGCGGCG
GCAGAAACGGCGACGGCAGCAGCGACTGCCGCCGGCACTGCGTCCGCCAT
TGCATTTGGCGCGACCGCCCCGTTGCCGAGAGGCGGGCCGGCGAGGGGGT
CGAGATCGCGGTCACCCGGTCCGGTCCCTTCTGCCGCTTCACGCGCTGCT
AATGCAGCGGCATCCTGCATTGGTGGTGAAAGTGGTGGCGGCGGTGGCGG
CGACGGCAACGACGGCAACGACGGTGGGAAGCGTGATACAGAGGGAGACG
GGAACGACGGCGGCGGTGAAGAAGACACTATAGAGGAAGGCGTCTTGCTT
GCGGCTCTACTAAACCGCGGGGAACAGCTGCGGCAGCGCTTGGACGCCGT
CGCGGGCGCCAGCGCTGCGTCTGCCGGCGTGCCATCCGCGGGCAGTGGCG
GTACTACAGCCGCCGCTATTCCCGGCGCCGCGGGGGATGCAGGCGACACG
TTGCCACCACAACTTTGGCCGCTGTCAAATGCAGCCGCCGTATCGGGCAT
GGCTGCCGGAACAGAAGGCGACATTCCCGTGTCGCACGACGTCCCTTCGT
CCGGAAGTGACGACGGCGGCGGTAGCGACGGCGACAGCGGCGTCGGCGGT
GGTGTTTCTGGGTGGGGTGCATATGGGCTGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6439:1053..3435+

>mRNA_P-wetherbeei_contig6439.1.1 ID=mRNA_P-wetherbeei_contig6439.1.1|Name=mRNA_P-wetherbeei_contig6439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1896bp|location=Sequence derived from alignment at P-wetherbeei_contig6439:1053..3435+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCACTTCTGACAAGCTGCCACCCTCGCTTCCCGGCCTGGAAGCGAC
CTTCACGATTTCCTCAGGGCTTCCGCCCCTCGTCGGGGGGCCTCTGCTCG
GCGAGGTGCAGCTGTGCCTGCCCGCGCTCTACCTCAAGCCGGGAGTCATC
AAACCGGTGCTGCCACTCGGCAGAAACGCGCGGCAGCACGCACAGACGGC
GGCGGCGCATGCCGCAGTGCTCTCGCGGCACCGCCACCAGCAGCAGCTGC
AGCCGCCGCAGCGCGTTGTCTACCTGGTGCGCGTGCGATGGTGGGGCGAG
GCCGGCCCGGGAACGATCCTCAAGCCGCGGGAGGTGGAGCGGCGCCAGGA
CGCGGCTGACTGCCCGACCCACGATGTTCTGGACCGGGCCACTTGCGCGC
TGTTTCCTGTACGGGCCGACGCCGCCAGCATCCGCACCTACCTCGAAGAT
ATGGGCCACCTCGCCCTCGACATTTTGGCGGGCGACGGCACGGCGCGCCA
GGTTGGCCGCTGCGTTCTTCCGCTCTCCCAACAGCCCATGTCAGACGACG
GCGGCGACCGCGGCGCCCTGGCGCACGGCGCCTTCCCCGTCCTGGCGGCG
GGCTCCAATGTATACGCCGGCGAATTGCGCGTCCGCCTCCGCGTGAACCT
CGGCCCCCGCCGCAGCGCGCTGTTGCGGTGTATCGCCGCCGGCGCCCGCG
CCTCGGCGGCGCTCGACGGCGCGGAGACGGAGCGGCAGCTCCGCGCGATG
GGGCAGCTGCCGCCGCTGCCGCCGGTGGCGGAGGATGCGCCGCCAGGGCG
GGAAGTGACGGTGGCGGCTGCGGCATGCGGAGGGTTCTCGGGCGCGGACT
GGGCGGGGCTGGACGCGTCGCGCGGCAGTTTGGATTCTGCGCCCGCCATG
CCACCGGCGGCGGCGGGAGCGGAGCCGTCCTTCTCGTTCCAGCTGAACGA
GGCGCTTACCGACTTTGACGACGCCGATGTGCTGCCGGTGTGGCCGACGC
CGTCCGGAAGACTGTACGCGCCGCCGGAAGCGCACGGCGAAGCGATCGTG
GCGGCGGCATCGGCGGCGGCGCGATCAACGAGCAGAGCCGGGGGAACGGC
ACCGGGGAGAACGGCGGCGTCAGCAGCGGCAGGGGCACCTGCAGCTGAAA
AGCGAATCTCGTCGCCGGAACGGCGAGGAAGAGCGTCCGGCGGGAGGGGA
GAGCGGCACGACGACGGCGGAGAGACACGCCGCCGCGGGGGCGGAGTAGC
AACGGGTGCGGCGGCAGAAACGGCGACGGCAGCAGCGACTGCCGCCGGCA
CTGCGTCCGCCATTGCATTTGGCGCGACCGCCCCGTTGCCGAGAGGCGGG
CCGGCGAGGGGGTCGAGATCGCGGTCACCCGGTCCGGTCCCTTCTGCCGC
TTCACGCGCTGCTAATGCAGCGGCATCCTGCATTGGTGGTGAAAGTGGTG
GCGGCGGTGGCGGCGACGGCAACGACGGCAACGACGGTGGGAAGCGTGAT
ACAGAGGGAGACGGGAACGACGGCGGCGGTGAAGAAGACACTATAGAGGA
AGGCGTCTTGCTTGCGGCTCTACTAAACCGCGGGGAACAGCTGCGGCAGC
GCTTGGACGCCGTCGCGGGCGCCAGCGCTGCGTCTGCCGGCGTGCCATCC
GCGGGCAGTGGCGGTACTACAGCCGCCGCTATTCCCGGCGCCGCGGGGGA
TGCAGGCGACACGTTGCCACCACAACTTTGGCCGCTGTCAAATGCAGCCG
CCGTATCGGGCATGGCTGCCGGAACAGAAGGCGACATTCCCGTGTCGCAC
GACGTCCCTTCGTCCGGAAGTGACGACGGCGGCGGTAGCGACGGCGACAG
CGGCGTCGGCGGTGGTGTTTCTGGGTGGGGTGCATATGGGCTGGCG
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