mRNA_P-wetherbeei_contig6432.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6432.2.1
Unique NamemRNA_P-wetherbeei_contig6432.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6432.2.1 vs. uniprot
Match: D7FRK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK4_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.740e-28
Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 1
Query:   16 VQIPSAADRLPSPWVLMARTPHVSVLLGAGVYVLFLAVWLPMYILSLAVTATGAWLALLGGVYVGGKELTRLLSYPGCSTTVQREMEREFTKNVSNRL 309
            V +PSAA+RLP P+  +A+TP ++++L  G YV FL ++LP+Y +S  VTATGAWL LLG VYVGG+ LTR +SYPG S  +QR++E E+TK+VS+RL
Sbjct:   38 VLLPSAAERLPFPFRALAQTPQLTLVLAGGGYVTFLVLFLPLYAVSFLVTATGAWLVLLGTVYVGGRGLTRTISYPGASKQIQRDIELEYTKHVSSRL 135          
BLAST of mRNA_P-wetherbeei_contig6432.2.1 vs. uniprot
Match: A0A6H5L6P2_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6P2_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 5.740e-27
Identity = 55/98 (56.12%), Postives = 77/98 (78.57%), Query Frame = 1
Query:   16 VQIPSAADRLPSPWVLMARTPHVSVLLGAGVYVLFLAVWLPMYILSLAVTATGAWLALLGGVYVGGKELTRLLSYPGCSTTVQREMEREFTKNVSNRL 309
            V +PSAA+RLP P+  +A+TP ++++L  G YV FL ++LP+Y +S  VTATGAWL LLG VY+GG+ LTR +SYPG S  +QR++E E+TK+VS+RL
Sbjct:   26 VLLPSAAERLPFPFRALAQTPQLTLVLAGGGYVTFLVLFLPLYAVSFLVTATGAWLVLLGTVYMGGRGLTRTISYPGASKQIQRDIELEYTKHVSSRL 123          
BLAST of mRNA_P-wetherbeei_contig6432.2.1 vs. uniprot
Match: A0A835YTB0_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 7.240e-24
Identity = 52/98 (53.06%), Postives = 68/98 (69.39%), Query Frame = 1
Query:   16 VQIPSAADRLPSPWVLMARTPHVSVLLGAGVYVLFLAVWLPMYILSLAVTATGAWLALLGGVYVGGKELTRLLSYPGCSTTVQREMEREFTKNVSNRL 309
            V +PSAADRLP PW  + RTP V+V  G   Y  F A+WLP+Y++S AVT+ GA L L GGV  GG+ L R LS+PG S+ V+RE+E+E+ K  + RL
Sbjct:   22 VLLPSAADRLPFPWGPITRTPPVAVACGGAAYAFFFALWLPLYLISFAVTSGGAGLVLAGGVVYGGRALARALSFPGSSSYVRREIEKEYAKYTAARL 119          
BLAST of mRNA_P-wetherbeei_contig6432.2.1 vs. uniprot
Match: A0A1Z5JIF0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIF0_FISSO)

HSP 1 Score: 69.7 bits (169), Expect = 1.040e-11
Identity = 32/92 (34.78%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   16 VQIPSAADRLPSPWVLMARTPHVSVLLGAGVYVLFLAVWLPMYILSLAVTATGAWLALLGGVYVGGKELTRLLSYPGCSTTVQREMEREFTK 291
            +Q  S AD LPS + ++     ++ L+   VY+LF+++W P Y+L+L V+  G +  L+  V+ GG+   R++++PG ++ V +E+E EF+K
Sbjct:   26 LQTRSLADALPSVFHVLVHNGKITSLVFVAVYLLFVSIWFPFYLLALVVSEWGVYAILMSAVFFGGRAFIRMIAFPGSNSGVVKEIETEFSK 117          
BLAST of mRNA_P-wetherbeei_contig6432.2.1 vs. uniprot
Match: A0A1E7FEM8_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEM8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.230e-9
Identity = 33/97 (34.02%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    4 LEWCVQIPSAADRLPSPWVLMARTPHVSVLLG-AGVYVLFLAVWLPMYILSLAVTATGAWLALLGGVYVGGKELTRLLSYPGCSTTVQREMEREFTK 291
            + WC++I + AD LP     +     +SV     G  VLFLA WLP +++S  V+  G +L  +  ++V G+ + R++++PG S+ + +E+E+EF K
Sbjct:   13 IAWCLRIRTLADALPPMLQPVVANGKMSVFFFMGGQLVLFLA-WLPFWLISFVVSELGLYLLFVCTIFVVGRAIIRMIAFPGSSSRISKEIEKEFAK 108          
BLAST of mRNA_P-wetherbeei_contig6432.2.1 vs. uniprot
Match: A0A7S2RNC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNC6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.610e-7
Identity = 27/82 (32.93%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   64 MARTPHVSVLLGAGVYVLFLAVWLPMYILSLAVTATGAWLALLGGVYVGGKELTRLLSYPGCSTTVQREMEREFTKNVSNRL 309
            +A  P ++ +    +YVLFL +W P+Y++S  VT  GA+L  +  +      +   LS+PGC  TVQR++E+++++ ++ +L
Sbjct:    6 LAANPKLAGITVLLLYVLFLVIWAPLYLVSFIVTEKGAYLVFIAALMSLAYLVALYLSFPGCFKTVQRDIEKDYSRRLAYKL 87          
BLAST of mRNA_P-wetherbeei_contig6432.2.1 vs. uniprot
Match: A0A7R9U682_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U682_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.290e-7
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    4 LEWCVQIPSAADRLPSPWVLM--ARTPHVSVLLGAGVYVLFLAVWLPMYILSLAVTATGAWLALLGGVYVGGKELTRLLSYPGCSTTVQREMEREFTK 291
            ++ C  +   +D    P +L   A  P   ++L  GVY +FL V+LP  +LSLAVT  G  L  LG V + G+ +   L +PG S +V+ ++ERE+T+
Sbjct:   16 VQTCCTVRCLSDLSELPLLLRWPAHAPLQVLVLCLGVYTVFLLVYLPALLLSLAVTWWGTALVALGVVLLIGRSVASFLLFPGASPSVKTDVEREYTR 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6432.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FRK4_ECTSI1.740e-2857.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6P2_9PHAE5.740e-2756.12AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
A0A835YTB0_9STRA7.240e-2453.06Hydrolase_4 domain-containing protein n=1 Tax=Trib... [more]
A0A1Z5JIF0_FISSO1.040e-1134.78Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A1E7FEM8_9STRA7.230e-934.02Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S2RNC6_9STRA1.610e-732.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9U682_9STRA2.290e-736.73Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6432contigP-wetherbeei_contig6432:1444..1752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr42856
Model size309
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.29e-07
EggNOG OGs2E02V@1|root,2S7IM@2759|Eukaryota,2XBF1@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_002680.1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186913.1645324-CDS-P-wetherbeei_contig6432:1443..17521683186913.1645324-CDS-P-wetherbeei_contig6432:1443..1752Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6432 1444..1752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6432.2.1prot_P-wetherbeei_contig6432.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6432 1444..1752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6432.2.1

>prot_P-wetherbeei_contig6432.2.1 ID=prot_P-wetherbeei_contig6432.2.1|Name=mRNA_P-wetherbeei_contig6432.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MLEWCVQIPSAADRLPSPWVLMARTPHVSVLLGAGVYVLFLAVWLPMYIL
SLAVTATGAWLALLGGVYVGGKELTRLLSYPGCSTTVQREMEREFTKNVS
NRL
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mRNA from alignment at P-wetherbeei_contig6432:1444..1752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6432.2.1 ID=mRNA_P-wetherbeei_contig6432.2.1|Name=mRNA_P-wetherbeei_contig6432.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig6432:1444..1752+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGAGTGGTGCGTGCAGATCCCTTCTGCGGCGGACCGTTTGCCGTC GCCGTGGGTGCTGATGGCGCGAACTCCGCACGTGTCCGTCCTGTTGGGGG CGGGAGTCTACGTCCTATTTTTGGCAGTTTGGCTGCCAATGTACATATTA TCCCTTGCCGTGACGGCCACGGGGGCATGGCTGGCGCTCCTCGGTGGCGT CTACGTGGGCGGCAAGGAATTGACGCGATTGCTGAGCTACCCGGGCTGCA GCACCACCGTACAGCGTGAGATGGAGCGCGAATTTACCAAGAACGTCTCC AACCGCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6432:1444..1752+

>mRNA_P-wetherbeei_contig6432.2.1 ID=mRNA_P-wetherbeei_contig6432.2.1|Name=mRNA_P-wetherbeei_contig6432.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig6432:1444..1752+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGAGTGGTGCGTGCAGATCCCTTCTGCGGCGGACCGTTTGCCGTC
GCCGTGGGTGCTGATGGCGCGAACTCCGCACGTGTCCGTCCTGTTGGGGG
CGGGAGTCTACGTCCTATTTTTGGCAGTTTGGCTGCCAATGTACATATTA
TCCCTTGCCGTGACGGCCACGGGGGCATGGCTGGCGCTCCTCGGTGGCGT
CTACGTGGGCGGCAAGGAATTGACGCGATTGCTGAGCTACCCGGGCTGCA
GCACCACCGTACAGCGTGAGATGGAGCGCGAATTTACCAAGAACGTCTCC
AACCGCCTG
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