mRNA_P-wetherbeei_contig6424.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6424.3.1
Unique NamemRNA_P-wetherbeei_contig6424.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6424.3.1 vs. uniprot
Match: A0A835ZFJ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFJ2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.520e-9
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:  189 EPWEYLMYGGAGGYIFHKLPAFEAELIDRVNYRRAAHNLPPLERVGGLASF 341
            +PWEY++Y  AG  +F ++P +E  L ++VN +RAA NLPP+ R G    F
Sbjct:   31 DPWEYVLYAAAGAALFRQIPIWEKNLTEQVNTKRAARNLPPINREGATTMF 81
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BLAST of mRNA_P-wetherbeei_contig6424.3.1 vs. uniprot
Match: A0A7S3Y6B8_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6B8_HETAK)

HSP 1 Score: 54.7 bits (130), Expect = 1.950e-6
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = 3 
Query:  189 EPWEYLMYGGAGGYIFHKLPAFEAELIDRVNYRRAAHNLPPLERVGGLASFTPV 350
            EPWEYL+ GG G Y   K PA++ +++ ++N   A   LPPL+ VG ++   P 
Sbjct:   51 EPWEYLVLGGLGMYAGSKYPAWQEDMVKKINVLHAERGLPPLDSVGQISITDPA 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6424.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZFJ2_9STRA6.520e-945.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y6B8_HETAK1.950e-640.74Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6424contigP-wetherbeei_contig6424:1981..2520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size542
Hectar predicted targeting categoryother localisation
Exons1
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186912.6230242-CDS-P-wetherbeei_contig6424:1980..25201683186912.6230242-CDS-P-wetherbeei_contig6424:1980..2520Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6424 1981..2520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6424.3.1prot_P-wetherbeei_contig6424.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6424 1981..2520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6424.3.1

>prot_P-wetherbeei_contig6424.3.1 ID=prot_P-wetherbeei_contig6424.3.1|Name=mRNA_P-wetherbeei_contig6424.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
MGLLYTTFGVWLGSMIKVYVNAVTKRVPRRGESTHCSRRLSSARRWMHID
FPSFCFASACTSQNRGSISCTVAREGTSSTSCPRLRRSSSTASTTDALRT
TSHLSSAWAALRPSPLWRRRPGKHLARVRTGRGQERKRSVGRQDRFSRTE
AAALQIRRRDTVSCINMNYSGEQSPAAALL
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mRNA from alignment at P-wetherbeei_contig6424:1981..2520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6424.3.1 ID=mRNA_P-wetherbeei_contig6424.3.1|Name=mRNA_P-wetherbeei_contig6424.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig6424:1981..2520- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCTGCTCTACACGACCTTTGGGGTATGGCTTGGCAGTATGATCAA
GGTCTACGTTAATGCGGTCACGAAGCGCGTCCCGCGGAGAGGTGAATCGA
CACACTGCTCTCGACGTCTCTCATCTGCACGGCGATGGATGCATATCGAC
TTCCCCTCCTTTTGCTTCGCCTCCGCTTGCACGTCGCAGAACCGTGGGAG
TATCTCATGTACGGTGGCGCGGGAGGGTACATCTTCCACAAGTTGCCCGC
GTTTGAGGCGGAGCTCATCGACCGCGTCAACTACAGACGCGCTGCGCACA
ACCTCCCACCTCTCGAGCGCGTGGGCGGCCTTGCGTCCTTCACCCCTGTG
GAGGAGGCGGCCCGGAAAGCATTTGGCAAGAGTTAGGACAGGAAGGGGGC
AGGAGAGGAAACGAAGTGTAGGGAGACAGGACAGATTTTCAAGAACCGAG
GCTGCTGCGCTGCAAATACGTCGGCGCGACACGGTGTCTTGCATCAATAT
GAATTATTCGGGTGAGCAGTCTCCTGCCGCCGCTTTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6424:1981..2520-

>mRNA_P-wetherbeei_contig6424.3.1 ID=mRNA_P-wetherbeei_contig6424.3.1|Name=mRNA_P-wetherbeei_contig6424.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig6424:1981..2520- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCTGCTCTACACGACCTTTGGGGTATGGCTTGGCAGTATGATCAA
GGTCTACGTTAATGCGGTCACGAAGCGCGTCCCGCGGAGAGGTGAATCGA
CACACTGCTCTCGACGTCTCTCATCTGCACGGCGATGGATGCATATCGAC
TTCCCCTCCTTTTGCTTCGCCTCCGCTTGCACGTCGCAGAACCGTGGGAG
TATCTCATGTACGGTGGCGCGGGAGGGTACATCTTCCACAAGTTGCCCGC
GTTTGAGGCGGAGCTCATCGACCGCGTCAACTACAGACGCGCTGCGCACA
ACCTCCCACCTCTCGAGCGCGTGGGCGGCCTTGCGTCCTTCACCCCTGTG
GAGGAGGCGGCCCGGAAAGCATTTGGCAAGAGTTAGGACAGGAAGGGGGC
AGGAGAGGAAACGAAGTGTAGGGAGACAGGACAGATTTTCAAGAACCGAG
GCTGCTGCGCTGCAAATACGTCGGCGCGACACGGTGTCTTGCATCAATAT
GAATTATTCGGGTGAGCAGTCTCCTGCCGCCGCTTTGCTG
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