mRNA_P-wetherbeei_contig6417.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6417.1.1
Unique NamemRNA_P-wetherbeei_contig6417.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6417.1.1 vs. uniprot
Match: D7FZ90_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ90_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.370e-30
Identity = 105/366 (28.69%), Postives = 157/366 (42.90%), Query Frame = 1 
Query:   46 WLSTGNDLVGKGIRRFGPPASRCGDTPGAGASAEERDEAFDHYVLLAGTVMGWVPAANNDGVALWRVVYEDGGEEHIQEGAARAGVSMFHGDGVLTRYAEEQRNGDFGAEPLGGGAAAANGETAXXXXXXDNARNADGGSGDSNCGGGEVSTRFLSYENSASSGTPITDADLGLHALRVQLLMHEATMMLSGIGEASRREYGRASGGGVAPRTQWLRLVREALSLSELRAALLELEENVHSLQAGEDVIEDGRMSMEVKGWRFGNDAHEAIGRRVRRFFLIADGDSSGXXXXXXXXXXXXXXXXXXKETALEASDAVVVAHLPTRGGKPARFHIVYEDGEEEEIGGADLQRGLAYAEREASE-PDE 1140
            W   G++ +GK ++R                        F   V  A TV  W+P  +N G+ALW + ++DG EE ++E   + G++M                   G   L   A                               G ++  F  Y N  +    I + DLG+ AL+ + L+H    ML  I + +R +Y + S     PR  WLRLV++A  +S+++ A+L LEE +  LQ GED +E GRM +E KGW F  DAH  IGRR RRFF                           KE     S+  V AHLP + G P  +H+V++DG+EE++   ++ R + Y +    E PD+
Sbjct: 1376 WREEGSEYLGKRVKRV-----------------------FGRRVAGA-TVTKWIPKESNQGLALWHLRHDDGDEEDLEEFEVKEGMAMXXXXXXXXXXXXXXXXXXXGVSELVKAAVD-----------------------------GSLTQTFSEYMNRLNKMQAIKERDLGVPALQ-EALLHREAGMLDDIKDRTR-DYAKGSNT-ATPRGAWLRLVKDAAGVSDVKEAILMLEETLRGLQEGEDKMEGGRMELEAKGWNFSPDAHPLIGRRCRRFF---------------------------KEFG--KSNCTVAAHLPAKNGDPELWHVVHDDGDEEDMEDHEVARAMKYFDEGVEEMPDD 1656
[Close]
BLAST of mRNA_P-wetherbeei_contig6417.1.1 vs. uniprot
Match: A0A6H5KZ49_9PHAE (WSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ49_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 2.550e-29
Identity = 105/366 (28.69%), Postives = 159/366 (43.44%), Query Frame = 1 
Query:   46 WLSTGNDLVGKGIRRFGPPASRCGDTPGAGASAEERDEAFDHYVLLAGTVMGWVPAANNDGVALWRVVYEDGGEEHIQEGAARAGVSMFHGDGVLTRYAEEQRNGDFGAEPLGGGAAAANGETAXXXXXXDNARNADGGSGDSNCGGGEVSTRFLSYENSASSGTPITDADLGLHALRVQLLMHEATMMLSGIGEASRREYGRASGGGVAPRTQWLRLVREALSLSELRAALLELEENVHSLQAGEDVIEDGRMSMEVKGWRFGNDAHEAIGRRVRRFFLIADGDSSGXXXXXXXXXXXXXXXXXXKETALEASDAVVVAHLPTRGGKPARFHIVYEDGEEEEIGGADLQRGLAYAEREASE-PDE 1140
            W   G++ +GK ++R                        F   V  A TV  W+P  +N G+ALW + ++DG EE ++E   + G++M                    +E +    AA +                           G +S  F  Y N  +    I + DLG+ AL+ + L+H    ML  I + +R +Y + S     PR  WLRLV++A  + +++ A+L LEE +  LQ GED +E GRM +E KGW F  DAH  IGRR RRFF                           KE     S+  V AHLP + G P  +H+V++DG+EE++   +L + + Y +    E PD+
Sbjct:  634 WREEGSEYLGKRVKRV-----------------------FGRRVAGA-TVTKWIPKESNQGLALWHLRHDDGDEEDLEEFEVKEGMAMXXXXXXXXXXXXXXXXXXGVSELV---KAAVD---------------------------GSLSQTFSEYMNRLNKMQAIKERDLGVSALQ-EALLHREAGMLDDIKDRTR-DYAKGSNT-ATPRGAWLRLVKDAAGVPDMKDAILMLEETLRGLQEGEDKMEGGRMELEAKGWNFSPDAHPLIGRRCRRFF---------------------------KEFG--KSNCTVAAHLPAKNGDPELWHVVHDDGDEEDMEDHELAKAMKYFDEGVEEMPDD 913
[Close]
BLAST of mRNA_P-wetherbeei_contig6417.1.1 vs. uniprot
Match: R1D2W8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D2W8_EMIHU)

HSP 1 Score: 65.9 bits (159), Expect = 1.860e-7
Identity = 84/310 (27.10%), Postives = 119/310 (38.39%), Query Frame = 1 
Query:  163 FDHYVLLAGTVMGWVPA--ANNDGVALWRVVYEDGGEEHIQEGAARAGVSMFHGDGVLTRYAEEQRNGDFGAEPLGGGAAAANGETAXXXXXXDNARNADGGSGDSNCGGGEVSTRFLS--YENSA-SSGTPITDADLGLHALRVQLLMHEATMMLSGIGEASRREYGRASGGGVAP----RTQWLRLVREALSLSELRAALLELEENVHSLQAGEDVIEDGRMSMEVKGWRFGNDAHEAIGRRVRRFFLIADGDSSGXXXXXXXXXXXXXXXXXXKETALEASDAVVVAHLPTRGGKPARFHIVYEDGE 1065
            FD      G +  W+PA  A+ DG AL+  V++DG EE ++        ++                     E LG  A AA  E A                           TR +   YEN     G       LG+   R ++   E  + L G+  A  R         VAP    R +WL+ + EA   SEL A+L+ELE+++  LQ+  DV E        K WR  +DAHE +GR VRRFF +                          E     +DA V + LP  G   A +H+ ++DG+
Sbjct:  833 FDEGGHTLGLITRWLPADEASGDG-ALFHAVHDDGDEEDLEXXXXXXXAALL--------------------EALGAEARAAAAECAR--------------------------TRLVQPKYENKQLKKGERAEAGHLGVEGARAEIGALEQAL-LPGLRAAGSRW--------VAPKARIRVRWLQSLDEAERASELAASLVELEQHLRELQSAADVSER-------KPWR--SDAHEWLGRSVRRFFWLKS------------------------EQRWLCTDASVGSWLPAEGSDVALWHVTHDDGD 1053
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6417.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZ90_ECTSI1.370e-3028.69Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
A0A6H5KZ49_9PHAE2.550e-2928.69WSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
R1D2W8_EMIHU1.860e-727.10Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6417contigP-wetherbeei_contig6417:912..2660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZ90
PFAMsAnk_2,Ank_5,Helo_like_N,Macro,PARP,PNP_UDP_1,WWE
Model size1751
Max annot lvl2759|Eukaryota
KEGG koko:K15261
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.17e-33
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionDDT and WHIM domain protein
Ec32 orthologEc-06_008960.1
EC2.4.2.30
Descriptionspectrin binding
Cds size1749
COG categoryI
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186912.1523902-CDS-P-wetherbeei_contig6417:911..26601683186912.1523902-CDS-P-wetherbeei_contig6417:911..2660Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6417 912..2660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6417.1.1prot_P-wetherbeei_contig6417.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6417 912..2660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6417.1.1

>prot_P-wetherbeei_contig6417.1.1 ID=prot_P-wetherbeei_contig6417.1.1|Name=mRNA_P-wetherbeei_contig6417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=583bp
SAGAGQKKKGPSPADWLSTGNDLVGKGIRRFGPPASRCGDTPGAGASAEE
RDEAFDHYVLLAGTVMGWVPAANNDGVALWRVVYEDGGEEHIQEGAARAG
VSMFHGDGVLTRYAEEQRNGDFGAEPLGGGAAAANGETAAANGGGDNARN
ADGGSGDSNCGGGEVSTRFLSYENSASSGTPITDADLGLHALRVQLLMHE
ATMMLSGIGEASRREYGRASGGGVAPRTQWLRLVREALSLSELRAALLEL
EENVHSLQAGEDVIEDGRMSMEVKGWRFGNDAHEAIGRRVRRFFLIADGD
SSGAGGSDGGVGGGGGGGGSSKETALEASDAVVVAHLPTRGGKPARFHIV
YEDGEEEEIGGADLQRGLAYAEREASEPDEDDDNEDVDDDASHGGGGGKA
GGKSGGGKGKSKAGGKSAAAAATADRAGDEDNDEDGEGDGDGQEEQATAA
AMEVDADATDDEEEEDGDDDGDDDDDYYGEHGGEQQQQQRRPSVATPKTA
AGGNSRATLWRSWGTRQRWIKGVQAAQASSLLSLALISLVENAVAMGVSS
DSLLEANRAKGRRAAAVAARAAGGDGWGRKGKR
back to top

mRNA from alignment at P-wetherbeei_contig6417:912..2660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6417.1.1 ID=mRNA_P-wetherbeei_contig6417.1.1|Name=mRNA_P-wetherbeei_contig6417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1749bp|location=Sequence derived from alignment at P-wetherbeei_contig6417:912..2660+ (Phaeothamnion wetherbeei SAG_119_79)
TCTGCTGGGGCGGGCCAGAAGAAGAAGGGCCCGTCGCCGGCCGACTGGCT
ATCGACCGGAAACGACCTGGTCGGAAAAGGCATTCGGCGCTTCGGGCCGC
CCGCCAGCCGTTGCGGCGATACCCCTGGCGCCGGCGCCAGCGCCGAGGAG
CGGGACGAAGCGTTCGACCATTACGTGCTGCTGGCGGGGACGGTTATGGG
GTGGGTCCCCGCGGCCAACAACGATGGGGTCGCGCTGTGGCGCGTTGTCT
ACGAGGACGGCGGCGAGGAGCATATTCAGGAGGGCGCGGCCCGCGCCGGC
GTGTCGATGTTTCACGGCGACGGCGTTCTTACCAGGTACGCTGAGGAGCA
GCGCAACGGCGACTTCGGCGCCGAGCCCTTAGGCGGCGGCGCCGCTGCCG
CAAACGGCGAGACCGCAGCCGCCAATGGAGGTGGCGATAACGCCAGGAAT
GCCGACGGCGGCAGCGGCGACAGCAACTGCGGCGGCGGCGAAGTGAGCAC
GCGGTTCTTGTCCTACGAGAACAGCGCCAGCAGCGGCACCCCCATCACGG
ACGCCGACCTGGGCCTGCATGCGCTGCGCGTCCAGCTGCTGATGCACGAG
GCGACCATGATGCTGTCGGGCATTGGCGAGGCGTCCCGGCGGGAGTACGG
CCGTGCGAGCGGCGGCGGCGTCGCGCCGCGCACCCAGTGGCTGCGGCTGG
TCCGGGAAGCGCTGTCGCTGTCGGAGCTGCGGGCGGCGCTGCTCGAGCTC
GAGGAGAACGTGCATTCGCTGCAGGCGGGCGAGGACGTCATCGAGGACGG
CCGCATGAGCATGGAGGTCAAGGGCTGGCGCTTCGGCAACGACGCCCACG
AGGCCATCGGCCGCCGCGTACGCCGCTTCTTTCTCATCGCCGACGGCGAC
AGCAGCGGCGCAGGCGGCAGCGACGGCGGCGTTGGCGGCGGCGGCGGCGG
CGGCGGGAGCAGCAAGGAGACGGCCCTGGAGGCGAGCGACGCCGTGGTGG
TGGCCCACCTGCCGACGCGTGGCGGCAAGCCGGCGCGCTTTCACATCGTG
TACGAGGACGGCGAAGAAGAAGAGATCGGCGGCGCCGACCTCCAGCGCGG
CCTCGCCTATGCCGAGCGCGAGGCCAGCGAGCCGGACGAAGACGACGACA
ACGAAGACGTCGATGACGACGCCTCCCATGGCGGCGGCGGCGGCAAAGCT
GGCGGCAAATCTGGCGGCGGCAAGGGCAAAAGCAAGGCTGGCGGGAAGAG
CGCCGCTGCTGCCGCCACCGCGGACAGGGCGGGCGACGAGGACAACGATG
AGGATGGCGAAGGCGACGGCGACGGACAGGAGGAGCAGGCGACGGCGGCG
GCGATGGAAGTAGATGCGGACGCGACGGACGATGAAGAGGAAGAAGACGG
AGACGACGACGGCGATGATGATGACGACTACTATGGCGAACACGGCGGCG
AGCAGCAGCAGCAGCAGCGGCGGCCGTCGGTGGCGACGCCGAAAACGGCA
GCGGGCGGGAACAGCCGGGCGACACTGTGGCGCAGCTGGGGCACGCGGCA
GCGCTGGATCAAGGGGGTGCAGGCGGCGCAGGCATCGTCGCTCTTGTCGC
TGGCGCTCATCTCGCTCGTGGAGAACGCCGTGGCGATGGGCGTCAGCAGC
GATTCTCTGCTCGAAGCGAATCGCGCCAAGGGGCGACGGGCGGCGGCAGT
GGCGGCGAGGGCGGCGGGCGGCGACGGCTGGGGGCGCAAAGGCAAGAGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6417:912..2660+

>mRNA_P-wetherbeei_contig6417.1.1 ID=mRNA_P-wetherbeei_contig6417.1.1|Name=mRNA_P-wetherbeei_contig6417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1749bp|location=Sequence derived from alignment at P-wetherbeei_contig6417:912..2660+ (Phaeothamnion wetherbeei SAG_119_79)
TCTGCTGGGGCGGGCCAGAAGAAGAAGGGCCCGTCGCCGGCCGACTGGCT
ATCGACCGGAAACGACCTGGTCGGAAAAGGCATTCGGCGCTTCGGGCCGC
CCGCCAGCCGTTGCGGCGATACCCCTGGCGCCGGCGCCAGCGCCGAGGAG
CGGGACGAAGCGTTCGACCATTACGTGCTGCTGGCGGGGACGGTTATGGG
GTGGGTCCCCGCGGCCAACAACGATGGGGTCGCGCTGTGGCGCGTTGTCT
ACGAGGACGGCGGCGAGGAGCATATTCAGGAGGGCGCGGCCCGCGCCGGC
GTGTCGATGTTTCACGGCGACGGCGTTCTTACCAGGTACGCTGAGGAGCA
GCGCAACGGCGACTTCGGCGCCGAGCCCTTAGGCGGCGGCGCCGCTGCCG
CAAACGGCGAGACCGCAGCCGCCAATGGAGGTGGCGATAACGCCAGGAAT
GCCGACGGCGGCAGCGGCGACAGCAACTGCGGCGGCGGCGAAGTGAGCAC
GCGGTTCTTGTCCTACGAGAACAGCGCCAGCAGCGGCACCCCCATCACGG
ACGCCGACCTGGGCCTGCATGCGCTGCGCGTCCAGCTGCTGATGCACGAG
GCGACCATGATGCTGTCGGGCATTGGCGAGGCGTCCCGGCGGGAGTACGG
CCGTGCGAGCGGCGGCGGCGTCGCGCCGCGCACCCAGTGGCTGCGGCTGG
TCCGGGAAGCGCTGTCGCTGTCGGAGCTGCGGGCGGCGCTGCTCGAGCTC
GAGGAGAACGTGCATTCGCTGCAGGCGGGCGAGGACGTCATCGAGGACGG
CCGCATGAGCATGGAGGTCAAGGGCTGGCGCTTCGGCAACGACGCCCACG
AGGCCATCGGCCGCCGCGTACGCCGCTTCTTTCTCATCGCCGACGGCGAC
AGCAGCGGCGCAGGCGGCAGCGACGGCGGCGTTGGCGGCGGCGGCGGCGG
CGGCGGGAGCAGCAAGGAGACGGCCCTGGAGGCGAGCGACGCCGTGGTGG
TGGCCCACCTGCCGACGCGTGGCGGCAAGCCGGCGCGCTTTCACATCGTG
TACGAGGACGGCGAAGAAGAAGAGATCGGCGGCGCCGACCTCCAGCGCGG
CCTCGCCTATGCCGAGCGCGAGGCCAGCGAGCCGGACGAAGACGACGACA
ACGAAGACGTCGATGACGACGCCTCCCATGGCGGCGGCGGCGGCAAAGCT
GGCGGCAAATCTGGCGGCGGCAAGGGCAAAAGCAAGGCTGGCGGGAAGAG
CGCCGCTGCTGCCGCCACCGCGGACAGGGCGGGCGACGAGGACAACGATG
AGGATGGCGAAGGCGACGGCGACGGACAGGAGGAGCAGGCGACGGCGGCG
GCGATGGAAGTAGATGCGGACGCGACGGACGATGAAGAGGAAGAAGACGG
AGACGACGACGGCGATGATGATGACGACTACTATGGCGAACACGGCGGCG
AGCAGCAGCAGCAGCAGCGGCGGCCGTCGGTGGCGACGCCGAAAACGGCA
GCGGGCGGGAACAGCCGGGCGACACTGTGGCGCAGCTGGGGCACGCGGCA
GCGCTGGATCAAGGGGGTGCAGGCGGCGCAGGCATCGTCGCTCTTGTCGC
TGGCGCTCATCTCGCTCGTGGAGAACGCCGTGGCGATGGGCGTCAGCAGC
GATTCTCTGCTCGAAGCGAATCGCGCCAAGGGGCGACGGGCGGCGGCAGT
GGCGGCGAGGGCGGCGGGCGGCGACGGCTGGGGGCGCAAAGGCAAGAGG
back to top