mRNA_P-wetherbeei_contig6409.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6409.1.1
Unique NamemRNA_P-wetherbeei_contig6409.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6409.1.1 vs. uniprot
Match: A0A836CLC3_9STRA (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC3_9STRA)

HSP 1 Score: 333 bits (855), Expect = 9.990e-109
Identity = 169/281 (60.14%), Postives = 204/281 (72.60%), Query Frame = 2
Query:  563 DMFYHPDDARAQHDGFFGRLTEEQEAALREMETLAASL--DLASIAGFGDDGAPSEPLPLLFLRFLRANDFKPHKAVAHIEENIEWRAAQGLRALLAEAPEEVLGCDPEEVNRYFPHWNLGPDRMGRPVLCKQYGGFKVWELMKLTTVERMVRSHLWEQEKTLAQMRRRTARGGQIVDSFVVVIDVAGMRIGQVTKDFISLMKQVAHVDQRMFPECLGAMFIINTPAPFAYIWAMFTPMLDPRTVAKIRIFARPRDWQPALLELVDAAILPPEYGGTGAPL 1399
            ++ Y  +D R   +GF G+L+E QE ALRE+  L  SL  DL  + G      P+EPL L  LRFLRAN F   KA+A +EEN+ +R  + +  LL +   +VLGCDPE +NRYFPHW+ G DR+GRPVLCKQYGGF V EL+ LTT+E MVRSH+WEQE TL  MRRR+   G IVDS VV+ID  GM + QVT DFI+LMK+VAHVDQ M+PE LG MFIINTP  F Y+W MF P+LD RT  KI+IF+RPRDWQPALLEL+ A +LPPEYGGTG PL
Sbjct:   19 ELAYSLEDPRHVLEGFHGQLSEPQEGALRELYGLVESLNLDLTLVRG-----QPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEAINRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRSLARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELIPADVLPPEYGGTGVPL 294          
BLAST of mRNA_P-wetherbeei_contig6409.1.1 vs. uniprot
Match: D8LG14_ECTSI (CRAL/TRIO, N-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG14_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 7.200e-74
Identity = 137/311 (44.05%), Postives = 192/311 (61.74%), Query Frame = 2
Query:  572 YHPDDARAQHDGFFGRLTEEQEAALREMETLAASLDLASIAGFGDDGAPS-----EPLPLLFLRFLRANDFKPHKAVAHIEENIEWRAAQGLRALLAEAPEEVLGCDPEEVNRYFPHWNLGPDRMGRPVLCKQYGGFKVWELMKLTTVERMVRSHLWEQEKTLAQMRRRTA------------RGGQIVDSFVVVIDVAGMRIGQVTKDFISLMKQVAHVDQRMFPECLGAMFIINTPAPFAYIWAMFTPMLDPRTVAKIRIFARPRDWQPALLELVDAAILPPEYGGTGAPLAERPSASTACMQAEVSGG 1453
            YHPDD R+  +G+ G LT+++EAAL E+++ A  LDL  + G    G        EPL L  LRFLR N F  +KA++ +E+ +E+R       LL ++P ++L C+ E+ N ++P W +G D++GRP+L  +YG  ++WE+ KLTTVERM   H  EQE  L  +RRRT             R G IVD+ VVVID  G+ +  VTK F+ L K  AH+DQ +FPE LG  FI+NTP+ F+Y+W+MF+P++D RT +KI I ++P+DW  AL E+ D   L PEYGGTG    + PS + A   A   GG
Sbjct:    4 YHPDDPRSSLEGYEGSLTQDEEAALAELQSAAQGLDLGLVRGAYGQGFERGDHAVEPLRLCLLRFLRGNAFIVNKALSQLEDCVEYRRQHPTDRLLTKSPHDILACNVEDFNSFYPRWLMGFDKLGRPILATRYGSLRLWEMTKLTTVERMTELHAREQELLLRVLRRRTLEXXXXXXXAAAERAGHIVDTAVVVIDTGGLTLRHVTKAFVRLFKLRAHMDQLLFPEMLGKCFIVNTPSLFSYVWSMFSPLVDERTRSKISIISKPQDWTKALQEIADPDQLSPEYGGTGRRKEDLPSLADALYAAGSRGG 314          
BLAST of mRNA_P-wetherbeei_contig6409.1.1 vs. uniprot
Match: A0A7S1UE19_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE19_9STRA)

HSP 1 Score: 242 bits (617), Expect = 7.600e-70
Identity = 118/265 (44.53%), Postives = 168/265 (63.40%), Query Frame = 2
Query:  605 GFFGRLTEEQEAALREMETLAASLDLASIAGFGDDGAPSEPLPLLFLRFLRANDFKPHKAVAHIEENIEWRAAQGLRALLAEAPEEVLGCDPEEVNRYFPHWNLGPDRMGRPVLCKQYGGFKVWELMKLTTVERMVRSHLWEQEKTLAQMRRRTARGGQIVDSFVVVIDVAGMRIGQVTKDFISLMKQVAHVDQRMFPECLGAMFIINTPAPFAYIWAMFTPMLDPRTVAKIRIFARPRDWQPALLELVDAAILPPEYGGTGAPL 1399
            G+ G L EEQE  L +   + A+  LA  A         E      LRFLRA  +    AVA +E +++WR   G   ++   P ++LGCDPE VNRYFPHW LG DR  RP+L KQYG F++W L++ TT+E+++R H+W Q+K +  M+ +  R G  ++++ +V+DV GM + QVT+DF+ L++Q+A +DQ  FPE LG +FI+N P  F  +W    P LDP T +KI+IF+R  DW P L+ELV+  +LP +YGGTG PL
Sbjct:   24 GYLGTLDEEQEELLSQFREMVAAKGLA--AALAQLAEFDESPDYAALRFLRACKWDVEVAVARMESHLDWRRDFGFEEIMMLEPAQILGCDPEAVNRYFPHWQLGFDRQHRPILLKQYGPFEIWNLLEQTTMEQLLRYHVWWQQKGVEIMKYKGQREGCPIETYTIVLDVQGMALTQVTRDFLRLVQQIAAIDQNEFPERLGTLFIVNVPRVFPMVWRGVRPFLDPDTESKIKIFSRKEDWAPELIELVEPEMLPEQYGGTGPPL 286          
BLAST of mRNA_P-wetherbeei_contig6409.1.1 vs. uniprot
Match: A0A6U4K456_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4K456_9STRA)

HSP 1 Score: 242 bits (617), Expect = 4.040e-67
Identity = 118/265 (44.53%), Postives = 168/265 (63.40%), Query Frame = 2
Query:  605 GFFGRLTEEQEAALREMETLAASLDLASIAGFGDDGAPSEPLPLLFLRFLRANDFKPHKAVAHIEENIEWRAAQGLRALLAEAPEEVLGCDPEEVNRYFPHWNLGPDRMGRPVLCKQYGGFKVWELMKLTTVERMVRSHLWEQEKTLAQMRRRTARGGQIVDSFVVVIDVAGMRIGQVTKDFISLMKQVAHVDQRMFPECLGAMFIINTPAPFAYIWAMFTPMLDPRTVAKIRIFARPRDWQPALLELVDAAILPPEYGGTGAPL 1399
            G+ G L EEQE  L +   + A+  LA  A         E      LRFLRA  +    AVA +E +++WR   G   ++   P ++LGCDPE VNRYFPHW LG DR  RP+L KQYG F++W L++ TT+E+++R H+W Q+K +  M+ +  R G  ++++ +V+DV GM + QVT+DF+ L++Q+A +DQ  FPE LG +FI+N P  F  +W    P LDP T +KI+IF+R  DW P L+ELV+  +LP +YGGTG PL
Sbjct:   24 GYLGTLDEEQEELLSQFREMVAAKGLA--AALAQLAEFDESPDYAALRFLRACKWDVEVAVARMESHLDWRRDFGFEEIMMLEPAQILGCDPEAVNRYFPHWQLGFDRQHRPILLKQYGPFEIWNLLEQTTMEQLLRYHVWWQQKGVEIMKYKGQREGCPIETYTIVLDVQGMALTQVTRDFLRLVQQIAAIDQNEFPERLGTLFIVNVPRVFPMVWRGVRPFLDPDTESKIKIFSRKEDWAPELIELVEPEMLPEQYGGTGPPL 286          
BLAST of mRNA_P-wetherbeei_contig6409.1.1 vs. uniprot
Match: A0A6U4K475_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4K475_9STRA)

HSP 1 Score: 242 bits (617), Expect = 1.550e-66
Identity = 118/265 (44.53%), Postives = 168/265 (63.40%), Query Frame = 2
Query:  605 GFFGRLTEEQEAALREMETLAASLDLASIAGFGDDGAPSEPLPLLFLRFLRANDFKPHKAVAHIEENIEWRAAQGLRALLAEAPEEVLGCDPEEVNRYFPHWNLGPDRMGRPVLCKQYGGFKVWELMKLTTVERMVRSHLWEQEKTLAQMRRRTARGGQIVDSFVVVIDVAGMRIGQVTKDFISLMKQVAHVDQRMFPECLGAMFIINTPAPFAYIWAMFTPMLDPRTVAKIRIFARPRDWQPALLELVDAAILPPEYGGTGAPL 1399
            G+ G L EEQE  L +   + A+  LA  A         E      LRFLRA  +    AVA +E +++WR   G   ++   P ++LGCDPE VNRYFPHW LG DR  RP+L KQYG F++W L++ TT+E+++R H+W Q+K +  M+ +  R G  ++++ +V+DV GM + QVT+DF+ L++Q+A +DQ  FPE LG +FI+N P  F  +W    P LDP T +KI+IF+R  DW P L+ELV+  +LP +YGGTG PL
Sbjct:   24 GYLGTLDEEQEELLSQFREMVAAKGLA--AALAQLAEFDESPDYAALRFLRACKWDVEVAVARMESHLDWRRDFGFEEIMMLEPAQILGCDPEAVNRYFPHWQLGFDRQHRPILLKQYGPFEIWNLLEQTTMEQLLRYHVWWQQKGVEIMKYKGQREGCPIETYTIVLDVQGMALTQVTRDFLRLVQQIAAIDQNEFPERLGTLFIVNVPRVFPMVWRGVRPFLDPDTESKIKIFSRKEDWAPELIELVEPEMLPEQYGGTGPPL 286          
BLAST of mRNA_P-wetherbeei_contig6409.1.1 vs. uniprot
Match: A0A482SYZ6_9ARCH (CRAL-TRIO domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYZ6_9ARCH)

HSP 1 Score: 179 bits (453), Expect = 2.690e-48
Identity = 92/271 (33.95%), Postives = 149/271 (54.98%), Query Frame = 2
Query:  572 YHPDDARAQHDGFFGRLTEEQEAALREMETLAASLDLASIAGFGDDGAPSEPLPLLFLRFLRANDFKPHKAVAHIEENIEWRAAQGLRALLAEAPEEVLGCDPEEVNRYFPHWNLGPDRMGRPVLCKQYGGFKVWELMKLTTVERMVRSHLWEQEKTLAQMRRRTARGGQIVDSFVVVIDVAGMRIGQVTKDFISLMKQVAHVDQRMFPECLGAMFIINTPAPFAYIWAMFTPMLDPRTVAKIRIFARPRDWQPALLELVDAAILPPEYGG 1384
            YHP+       G++  ++ +Q   L+ +      ++   +    D+    E   L  LRFLRA  F   +++  + E+++WR A+    L  E  EEVLGCD  ++  +FP W  G D+  RPV  +++G F++W ++KLT++ER+VR H WE E+ L  M + +   G  +++FV+VID AG  +   T D  + +K +A  D   +PE LG M IIN P   +  W +    LDP T  K+RI A+  +W+P L + +D + +P +YGG
Sbjct:   13 YHPNSELIGRPGYYPNVSADQ---LKAVNAFIEQIEAEELQFNTDE----EHEFLKLLRFLRARKFNVEQSMKMVREDVKWRLAENRLNLRRETAEEVLGCDLTQIYNFFPTWIQGVDKQLRPVSYRKFGKFEIWNVLKLTSMERLVRFHAWETEQALRGMYKGSQESGYNIETFVLVIDAAGWGLRLATSDAYAFIKNMATTDSDHYPERLGNMLIINAPTVLSVAWKVVQGFLDPVTKKKVRILAKRSEWEPMLKQYIDVSQIPQQYGG 276          
BLAST of mRNA_P-wetherbeei_contig6409.1.1 vs. uniprot
Match: A0A7S1XZQ4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZQ4_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.710e-47
Identity = 105/273 (38.46%), Postives = 148/273 (54.21%), Query Frame = 2
Query:  605 GFFGRLTEEQEAALREM-ETLAASLDLASIAGFGDDGAPSEPLPLLFLRFLRANDFKPHKAVAHIEENIEWRAAQGLRALLAEAPEEVLGCDPEE---VNRYFPHWNLGPDRMGRPVLCKQYGGFKVWELMKLTTVERMVRSHLWEQEKTLAQMRRRTARGGQIVDSFVVVIDVAGMRIGQVTKDFISLMKQVAHVDQRMFPECLGAMFIINTPAPFAYIWAMFTPMLDPRTVAKIRIFARPRDWQPALLELVDAAILPPEYGGTGAPLAERP 1411
            G+F  L   + AALRE+ E L A    A     G    P+E L    LRFLRA  F   KA+A +  +++WR A+G+ AL   +  EVL C       V   FP    G DR G+ ++ + YG F++W++++ TT+E ++R H+WE E+ L  MRRR A  G  V+SF  VID  G R+G  T D +  +K +A +D   +PE LG MFIIN P+     W +    L PRT  KI++ A   +W+P L   +D   +P +YGGT     E P
Sbjct:   34 GYFFSLAPAEAAALRELRERLRAGG--AERRASGHVLRPAETLDTYCLRFLRARSFDVDKALAFMLADLDWREAEGVDALAEMSVHEVLECSEASAAAVLDLFPSHVHGHDREGQSLMFRHYGKFEIWKILEHTTMENLLRLHVWENERALRAMRRRAAATGTSVESFCAVIDAEGWRLGLATSDAMRYIKGMATIDSDHYPERLGRMFIINLPSVIGASWRVIKRCLAPRTTDKIQLLAERSEWEPVLKHYIDDEFIPRQYGGTSLGPGEHP 304          
BLAST of mRNA_P-wetherbeei_contig6409.1.1 vs. uniprot
Match: A0A7S3HMX7_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMX7_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.540e-46
Identity = 94/262 (35.88%), Postives = 147/262 (56.11%), Query Frame = 2
Query:  605 GFFGRLTEEQEAALREMETLAASLDLASIAGFGDDGAPSEPLPLLFLRFLRANDFKPHKAVAHIEENIEWRAAQGLRALLAEAPEEVLGCDPEEVNRYFPHWNLGPDRMGRPVLCKQYGGFKVWELMKLTTVERMVRSHLWEQEKTLAQMRRRTARGGQIVDSFVVVIDVAGMRIGQVTKDFISLMKQVAHVDQRMFPECLGAMFIINTPAPFAYIWAMFTPMLDPRTVAKIRIFAR-PRDWQPALLELVDAAILPPEYGGT 1387
            G++  ++ EQ AA  ++  +  + +L     F  D    E   L  LRFLRA  +    A+A I E+I WRA      L  E+ +EVL CD E++  YFP W  G D+  RPV  +++G F++W ++KLTT+ER++R H WE E+ L  M   + + G  +++FV+VID +G  +   T D  + +K +A  D   +PE LG + +IN P+  ++ W +    LD  T  KI+I +  P++WQP L   +D   +P +YGGT
Sbjct:    7 GYYPNISPEQLAAASQVLAIIQAENL----NFNSD---EEETFLKILRFLRARKYSVKNALAMIREDINWRAQNNRLDLPKESAQEVLNCDIEKLYDYFPVWFQGYDKQMRPVSYRKFGKFEIWNVLKLTTMERLIRFHAWETEQALRSMYSLSRKSGYNIETFVIVIDASGWNLKLATSDAFAFIKGMAVTDSDHYPERLGTLVLINAPSMLSFAWRVIQGFLDSVTKEKIKILSSDPQEWQPVLRHYIDNDQIPRQYGGT 261          
BLAST of mRNA_P-wetherbeei_contig6409.1.1 vs. uniprot
Match: A0A6H5KCF8_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCF8_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 3.500e-45
Identity = 102/291 (35.05%), Postives = 155/291 (53.26%), Query Frame = 2
Query:  572 YHPDDARAQHDGFFGRLTEEQEAALREMETLAASLDLASIAGFGDDG------APSEPLPLLFLRFLRANDFKPHKAVAHIEENIEWRAAQGLRALLAEAPEEVLGCDPEEV-----NRYFPHWNLGPDRMGRPVLCKQYGGFKVWELMKLTTVERMVRSHLWEQEKTLAQMRRRTARGGQIVDSFVVVIDVAGMRIGQVTKDFISLMKQVAHVDQRMFPECLGAMFIINTPAPFAYIWAMFTPMLDPRTVAKIRIFARPRDWQPALLELVDAAILPPEYGGTGAPLAERP 1411
            YH   A A+  G+  RL+   EAAL  +        +      GD G       P E   L+ LRFLR N +      A +E ++ WR   G+ +     P EV GC  +E        ++PH+ +G DR GRP+L ++YG F   +L + TT+  ++R H WEQE     +RR +AR G +V+++ V++D  GM +GQV +DF+ L+++++ +D+  +P   G +F+INTP  F   W      L   T A + IF   ++W+ AL E VD A+LP +YGGT   LA+ P
Sbjct:   81 YHSGAACAEMIGYARRLSPSHEAALGGLRQWLTRESVNISPLLGDVGLALAVSCPPEEEDLVLLRFLRHNAWDVELTRAQLEASLSWRIETGVASNARREPWEVSGCASKEAFEELCRTHYPHYTIGTDRAGRPILVQKYGNFDTSKLQEFTTLPGLLRYHAWEQENNADLLRRASARTGYLVETYAVIMDFKGMSMGQVNRDFLWLLRKLSEMDRTHYPGRGGVIFVINTPPLFGLAWQGIRGFLT--TQATVHIFGVEKEWKAALAEAVDPAVLPLDYGGTAPHLADTP 369          
BLAST of mRNA_P-wetherbeei_contig6409.1.1 vs. uniprot
Match: A0A6H5JC33_9PHAE (CRAL_TRIO_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC33_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 5.470e-44
Identity = 86/206 (41.75%), Postives = 123/206 (59.71%), Query Frame = 2
Query:  572 YHPDDARAQHDGFFGRLTEEQEAALREMETLAASLDLASIAGFGDDGAPS-----EPLPLLFLRFLRANDFKPHKAVAHIEENIEWRAAQGLRALLAEAPEEVLGCDPEEVNRYFPHWNLGPDRMGRPVLCKQYGGFKVWELMKLTTVERMVRSHLWEQEKTLAQMRRRTARGG-----------QIVDSFVVVIDVAGMRIGQVT 1141
            YHPDD R+  +G+ G LT+++EAAL E+ + A  LDL  + G    G        EPL L  LRFLR N F  +KA++ +E+ +E+R       LL+++P ++L C+ E+ N ++P W +G D++GRP+L  QYG  ++WE+ KLTTVERM   H  EQE  L  +RRRT  GG            IVD+ VVVID  G+ +  V+
Sbjct:    4 YHPDDPRSSLEGYEGSLTQDEEAALAELRSAAQGLDLGMVRGAYGQGFEGGDHAVEPLRLCLLRFLRGNAFDVNKALSQLEDCVEYRRQHPTDRLLSKSPHDILACNLEDFNSFYPRWLMGFDKLGRPILATQYGSLRLWEMTKLTTVERMTELHAREQELLLRVLRRRTLEGGGGEGAAAERAGHIVDTAVVVIDTGGLTLRHVS 209          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6409.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLC3_9STRA9.990e-10960.14CRAL-TRIO domain-containing protein (Fragment) n=1... [more]
D8LG14_ECTSI7.200e-7444.05CRAL/TRIO, N-terminus family protein n=1 Tax=Ectoc... [more]
A0A7S1UE19_9STRA7.600e-7044.53Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6U4K456_9STRA4.040e-6744.53Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U4K475_9STRA1.550e-6644.53Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A482SYZ6_9ARCH2.690e-4833.95CRAL-TRIO domain-containing protein n=1 Tax=archae... [more]
A0A7S1XZQ4_9STRA2.710e-4738.46Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HMX7_9STRA3.540e-4635.88Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A6H5KCF8_9PHAE3.500e-4535.05CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JC33_9PHAE5.470e-4441.75CRAL_TRIO_N domain-containing protein n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6409contigP-wetherbeei_contig6409:1363..3454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LG14
PFAMsCRAL_TRIO,EBP
Model size1481
Max annot lvl2759|Eukaryota
KEGG koko:K19996
Hectar predicted targeting categorymitochondrion
Exons3
Evalue3.64e-76
EggNOG OGsKOG1471@1|root,KOG4826@1|root,KOG1471@2759|Eukaryota,KOG4826@2759|Eukaryota
Descriptioncholestenol delta-isomerase activity
Cds size1137
COG categoryS
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186910.9895656-UTR-P-wetherbeei_contig6409:1362..17051683186910.9895656-UTR-P-wetherbeei_contig6409:1362..1705Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6409 1363..1705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186911.004977-CDS-P-wetherbeei_contig6409:1705..19991683186911.004977-CDS-P-wetherbeei_contig6409:1705..1999Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6409 1706..1999 +
1683186911.0158567-CDS-P-wetherbeei_contig6409:2208..27391683186911.0158567-CDS-P-wetherbeei_contig6409:2208..2739Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6409 2209..2739 +
1683186911.026591-CDS-P-wetherbeei_contig6409:3142..34541683186911.026591-CDS-P-wetherbeei_contig6409:3142..3454Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6409 3143..3454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6409.1.1prot_P-wetherbeei_contig6409.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6409 1706..3454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6409.1.1

>prot_P-wetherbeei_contig6409.1.1 ID=prot_P-wetherbeei_contig6409.1.1|Name=mRNA_P-wetherbeei_contig6409.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=379bp
MTRLRLRPRASSMVGETSPVRKWGKRGRAATVAARPNEDDVARLEAGSIT
VATTPLELPPAAAAASFEPVQLVDMFYHPDDARAQHDGFFGRLTEEQEAA
LREMETLAASLDLASIAGFGDDGAPSEPLPLLFLRFLRANDFKPHKAVAH
IEENIEWRAAQGLRALLAEAPEEVLGCDPEEVNRYFPHWNLGPDRMGRPV
LCKQYGGFKVWELMKLTTVERMVRSHLWEQEKTLAQMRRRTARGGQIVDS
FVVVIDVAGMRIGQVTKDFISLMKQVAHVDQRMFPECLGAMFIINTPAPF
AYIWAMFTPMLDPRTVAKIRIFARPRDWQPALLELVDAAILPPEYGGTGA
PLAERPSASTACMQAEVSGGGTDESERGG
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mRNA from alignment at P-wetherbeei_contig6409:1363..3454+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6409.1.1 ID=mRNA_P-wetherbeei_contig6409.1.1|Name=mRNA_P-wetherbeei_contig6409.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2092bp|location=Sequence derived from alignment at P-wetherbeei_contig6409:1363..3454+ (Phaeothamnion wetherbeei SAG_119_79)
AAAAAGGGCTTAACCTCCCCTCCCCTGGCACCTTTGACCGGCGCGCCTCT CGAGCACGCGAACCAGGGTTCTAAGCAAGGGAAACGCGCGGCATCGGCCG GGAAGGAAAGTGCTCGGCCGCGCGCCTTTCCCGCAGAGGAAAAAGCGCTG GAGGCGCCCCACATAAAGCGCGATTACAGACGAACCGGGCCGCGGGAGGT CCTTGAGCCCCTGTACTTCCGGCGCTGGCCTCCGGCAGCGACGGGTCTTG TTGTCCCGCTCGCAAAACCCTTCATCTAACGTCGCTCCCAGCGCCTTTGA AACCTCAGGCGAAACTGCTTTCGGCGCCAATCTCTCAGAGATCATGACGA GGCTTCGTCTGAGACCAAGGGCATCGTCGATGGTCGGAGAGACGAGCCCA GTGCGCAAGTGGGGAAAGCGCGGGAGAGCAGCAACTGTTGCGGCACGACC AAACGAAGACGATGTTGCTCGACTTGAGGCAGGCTCCATTACGGTAGCCA CGACTCCATTAGAGCTACCGCCTGCCGCTGCTGCTGCGTCGTTCGAGCCC GTGCAGCTCGTCGATATGTTTTACCATCCCGACGACGCCAGAGCGCAGCA CGACGGCTTCTTCGGCCGCCTGACGGAGGAGCAAGAGGCGAGCCGCACAG CAATTTGAATACTCGGCCTACCGGCAAAGACGTCGGCCAATTGCTTTGCC TGCGCTTTGAAGGTTCTCCTCCATTTGGCTTGGTCATTTCTGATCTCCCT CTTCTCCCTTCTCTCTTTCGAACCTTGTTTGATTATTTTTAAATTTCGCA CGTGCGCCTTGCCTCGGCTTTCGCCCTTTTCCCTCAATTTGAAAAGGCGG CGCTCCGGGAAATGGAGACGCTGGCAGCTAGCCTAGACCTCGCCTCCATT GCCGGCTTCGGTGACGACGGCGCGCCGTCCGAGCCGTTACCGCTGCTGTT CCTGCGATTCTTGCGCGCCAACGACTTCAAGCCGCACAAGGCGGTCGCCC ACATCGAAGAAAACATCGAGTGGCGCGCCGCGCAGGGTCTTCGCGCCCTG CTTGCAGAGGCGCCCGAAGAGGTACTCGGCTGCGATCCCGAAGAGGTCAA CCGTTACTTCCCCCACTGGAATCTGGGGCCGGATCGCATGGGGCGGCCGG TCCTCTGCAAGCAGTACGGTGGCTTCAAAGTGTGGGAGCTGATGAAGCTG ACGACGGTGGAGCGCATGGTGCGCAGCCACCTGTGGGAGCAGGAGAAAAC GCTGGCGCAAATGCGGCGGCGGACGGCGCGTGGCGGGCAGATCGTGGATT CCTTTGTCGTTGTGATTGATGTCGCTGGGATGCGCATTGGGCAGGTCACC AAGGACTTTATTTCGCTCATGAAGCAGGTGGGAAAAACGAGAGAGAAAGA GGCGGAGAAGGGGAAAAAGGGAAGACTTTTCGGGAGCTTTCTGGGCGGTA AAGTTTTTGCGTTCGTTTGATGCAGGAGACTTGTAGACAGGCATTTTTGA CACGCCAGCAACTTTCTAGCAATTGAAGACTGCTTTTCCGGGTTTACGAC TTTGCAAGTAAGGGGTTCAGGTCTTCATAAAGAGCTGGTTGATCCGCTAC ACTTGTCGCCGAAAAGCAGGCATGGCCGTTTTGCGATCATTTTTGTTTCT TCGTTTTGTTTCTCAGTATGTGCGTGCTCCTTCCAGCGTTTTTCTTCTCG AAAGGACCTACAAAAGTAAGTTGAGAACTGACTCAGCACCATACTTTTCT CTTTCACCGACACACACATATGGCAATCAGGTGGCGCACGTGGACCAGCG CATGTTCCCAGAGTGCCTCGGCGCAATGTTCATAATTAACACGCCGGCAC CCTTCGCCTACATATGGGCCATGTTCACGCCCATGCTCGACCCGCGCACC GTCGCCAAGATACGTATCTTTGCCCGGCCTCGCGACTGGCAGCCGGCCCT GCTGGAGCTGGTCGATGCCGCCATCCTGCCGCCTGAGTACGGCGGCACCG GCGCGCCGCTGGCGGAGCGTCCGTCCGCCTCGACGGCGTGCATGCAGGCG GAGGTCAGTGGTGGCGGCACCGATGAGAGCGAGAGGGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6409:1363..3454+

>mRNA_P-wetherbeei_contig6409.1.1 ID=mRNA_P-wetherbeei_contig6409.1.1|Name=mRNA_P-wetherbeei_contig6409.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1137bp|location=Sequence derived from alignment at P-wetherbeei_contig6409:1363..3454+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAGGCTTCGTCTGAGACCAAGGGCATCGTCGATGGTCGGAGAGAC
GAGCCCAGTGCGCAAGTGGGGAAAGCGCGGGAGAGCAGCAACTGTTGCGG
CACGACCAAACGAAGACGATGTTGCTCGACTTGAGGCAGGCTCCATTACG
GTAGCCACGACTCCATTAGAGCTACCGCCTGCCGCTGCTGCTGCGTCGTT
CGAGCCCGTGCAGCTCGTCGATATGTTTTACCATCCCGACGACGCCAGAG
CGCAGCACGACGGCTTCTTCGGCCGCCTGACGGAGGAGCAAGAGGCGGCG
CTCCGGGAAATGGAGACGCTGGCAGCTAGCCTAGACCTCGCCTCCATTGC
CGGCTTCGGTGACGACGGCGCGCCGTCCGAGCCGTTACCGCTGCTGTTCC
TGCGATTCTTGCGCGCCAACGACTTCAAGCCGCACAAGGCGGTCGCCCAC
ATCGAAGAAAACATCGAGTGGCGCGCCGCGCAGGGTCTTCGCGCCCTGCT
TGCAGAGGCGCCCGAAGAGGTACTCGGCTGCGATCCCGAAGAGGTCAACC
GTTACTTCCCCCACTGGAATCTGGGGCCGGATCGCATGGGGCGGCCGGTC
CTCTGCAAGCAGTACGGTGGCTTCAAAGTGTGGGAGCTGATGAAGCTGAC
GACGGTGGAGCGCATGGTGCGCAGCCACCTGTGGGAGCAGGAGAAAACGC
TGGCGCAAATGCGGCGGCGGACGGCGCGTGGCGGGCAGATCGTGGATTCC
TTTGTCGTTGTGATTGATGTCGCTGGGATGCGCATTGGGCAGGTCACCAA
GGACTTTATTTCGCTCATGAAGCAGGTGGCGCACGTGGACCAGCGCATGT
TCCCAGAGTGCCTCGGCGCAATGTTCATAATTAACACGCCGGCACCCTTC
GCCTACATATGGGCCATGTTCACGCCCATGCTCGACCCGCGCACCGTCGC
CAAGATACGTATCTTTGCCCGGCCTCGCGACTGGCAGCCGGCCCTGCTGG
AGCTGGTCGATGCCGCCATCCTGCCGCCTGAGTACGGCGGCACCGGCGCG
CCGCTGGCGGAGCGTCCGTCCGCCTCGACGGCGTGCATGCAGGCGGAGGT
CAGTGGTGGCGGCACCGATGAGAGCGAGAGGGGCGGC
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