mRNA_P-wetherbeei_contig6406.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6406.2.1
Unique NamemRNA_P-wetherbeei_contig6406.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6406.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6406contigP-wetherbeei_contig6406:1505..2236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size732
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186910.7895017-UTR-P-wetherbeei_contig6406:1504..17501683186910.7895017-UTR-P-wetherbeei_contig6406:1504..1750Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6406 1505..1750 -
1683186910.813034-UTR-P-wetherbeei_contig6406:2119..22361683186910.813034-UTR-P-wetherbeei_contig6406:2119..2236Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6406 2120..2236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186910.8046882-CDS-P-wetherbeei_contig6406:1750..21191683186910.8046882-CDS-P-wetherbeei_contig6406:1750..2119Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6406 1751..2119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6406.2.1prot_P-wetherbeei_contig6406.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6406 1751..2119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6406.2.1

>prot_P-wetherbeei_contig6406.2.1 ID=prot_P-wetherbeei_contig6406.2.1|Name=mRNA_P-wetherbeei_contig6406.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
MATPMHKLGRTGKVDFSRQHGTQLTCAMQTRHASMTYPSAGIRVPGVLDA
LRRAFCTTAVPMTKFKALFDLQRAISTKPFGAKQGGESGCFLRCRRLQMR
LPSVLRHCSCQRRSRRSNAWLH*
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mRNA from alignment at P-wetherbeei_contig6406:1505..2236-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6406.2.1 ID=mRNA_P-wetherbeei_contig6406.2.1|Name=mRNA_P-wetherbeei_contig6406.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=732bp|location=Sequence derived from alignment at P-wetherbeei_contig6406:1505..2236- (Phaeothamnion wetherbeei SAG_119_79)
CACGTCGCTTACCGTGTGCAGGAGGCAGCGCGGCGGACTACCGGAGCGAA
AAAGTAAAGACAGAAGGAAGAGAGATATTGCCTTCATCAAGCTTTTTACT
CCGTCTGGGGGCAGGCAATGGCCACACCGATGCACAAACTGGGAAGAACC
GGCAAAGTGGATTTCAGCAGGCAGCACGGGACACAGCTGACATGCGCTAT
GCAAACCCGTCACGCTTCGATGACGTATCCCTCGGCTGGCATCCGTGTGC
CTGGTGTGCTGGACGCTCTCCGCCGGGCTTTCTGCACAACGGCCGTGCCC
ATGACGAAGTTCAAGGCCCTCTTTGACTTGCAGCGCGCTATCTCAACGAA
GCCCTTCGGCGCCAAGCAGGGAGGAGAGAGCGGCTGCTTTCTACGCTGCC
GGAGACTGCAGATGCGGCTGCCATCGGTACTGCGACATTGTAGTTGTCAA
CGCCGTAGTCGTCGCTCAAACGCCTGGCTGCATTAACTGGTGGCGCGGCC
GATGGAATTTCGAACGGCGAGAAAATCACTACGTGTTCACGTTGACTTTT
GCTCAATCGTCCTCTGCAGGCGATTGCTCGCCGCATCGAAGGAAGTGGAG
CCGAAACTGGCGGGTCTTAGCATGAAACAGTCTGCCCGCCGTCGCCGCTG
CTCTGCAAGCATTTGACGCTGCCGTCACGGCGACGGCGGCCATCCTTTGC
TTGTCGGCTTTTCTTGCTGCGGTGCCGTGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6406:1505..2236-

>mRNA_P-wetherbeei_contig6406.2.1 ID=mRNA_P-wetherbeei_contig6406.2.1|Name=mRNA_P-wetherbeei_contig6406.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig6406:1505..2236- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCACACCGATGCACAAACTGGGAAGAACCGGCAAAGTGGATTTCAG
CAGGCAGCACGGGACACAGCTGACATGCGCTATGCAAACCCGTCACGCTT
CGATGACGTATCCCTCGGCTGGCATCCGTGTGCCTGGTGTGCTGGACGCT
CTCCGCCGGGCTTTCTGCACAACGGCCGTGCCCATGACGAAGTTCAAGGC
CCTCTTTGACTTGCAGCGCGCTATCTCAACGAAGCCCTTCGGCGCCAAGC
AGGGAGGAGAGAGCGGCTGCTTTCTACGCTGCCGGAGACTGCAGATGCGG
CTGCCATCGGTACTGCGACATTGTAGTTGTCAACGCCGTAGTCGTCGCTC
AAACGCCTGGCTGCATTAA
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