mRNA_P-wetherbeei_contig64.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig64.1.1
Unique NamemRNA_P-wetherbeei_contig64.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig64.1.1 vs. uniprot
Match: UPI0003F0DBCE (high mobility group protein B3-like n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F0DBCE)

HSP 1 Score: 52.8 bits (125), Expect = 1.330e-5
Identity = 33/114 (28.95%), Postives = 58/114 (50.88%), Query Frame = 1 
Query:   31 INKELGTLWKATSAEDRSAYEAMATKDKLRYLREMKEYKPVEGYRREVPRINAPKTANGAGAASVPLCRPAYSLFASQERRGVLESSSRPARARMSKIFGQRWHHLNPAEAQLY 372
             +K+    WK  S ++++ ++ MA   K+RY REMK+Y P +G ++E P  NAPK                + LF S+ R  +  ++   +   ++K  G+ W++L+  E Q Y
Sbjct:   41 FSKKCSERWKTMSGKEKAKFDEMAKAGKVRYDREMKDYGPAKGGKKEDP--NAPKRPPSG-----------FFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQSY 141
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BLAST of mRNA_P-wetherbeei_contig64.1.1 vs. uniprot
Match: A0A0D9SDW3_CHLSB (Uncharacterized protein n=5 Tax=Simiiformes TaxID=314293 RepID=A0A0D9SDW3_CHLSB)

HSP 1 Score: 50.4 bits (119), Expect = 8.720e-5
Identity = 33/114 (28.95%), Postives = 57/114 (50.00%), Query Frame = 1 
Query:   31 INKELGTLWKATSAEDRSAYEAMATKDKLRYLREMKEYKPVEGYRREVPRINAPKTANGAGAASVPLCRPAYSLFASQERRGVLESSSRPARARMSKIFGQRWHHLNPAEAQLY 372
             +K+    WK  S +++S ++ MA  DK+ Y REMK+Y P +G ++E    NAPK                + LF S+    +  ++   +   ++K  G+ W++LN +E Q Y
Sbjct:   40 FSKKCSERWKTMSGKEKSKFDEMAKADKVCYDREMKDYGPAKGGKKEED-PNAPKRPPSG-----------FFLFCSEFHPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPY 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig64.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0003F0DBCE1.330e-528.95high mobility group protein B3-like n=1 Tax=Elepha... [more]
A0A0D9SDW3_CHLSB8.720e-528.95Uncharacterized protein n=5 Tax=Simiiformes TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig64contigP-wetherbeei_contig64:94..963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog41875.XP_007511176.1
PFAMsHMG_box,adh_short_C2
Model size417
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00060,RC00144,RC00181,RC00496
KEGG koko:K08081,ko:K11424
KEGG ReactionR02832,R03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko00960,ko01100,ko01110,ko05202,map00310,map00960,map01100,map01110,map05202
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.63e-09
EggNOG OGsCOG1028@1|root,COG5648@1|root,KOG0381@2759|Eukaryota,KOG0725@2759|Eukaryota,37IWV@33090|Viridiplantae
EC1.1.1.206,2.1.1.43
DescriptionTropinone reductase
Cds size417
COG categoryQ
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186910.1320004-CDS-P-wetherbeei_contig64:93..2461683186910.1320004-CDS-P-wetherbeei_contig64:93..246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig64 94..246 -
1683186910.1433108-CDS-P-wetherbeei_contig64:374..4591683186910.1433108-CDS-P-wetherbeei_contig64:374..459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig64 375..459 -
1683186910.1538522-CDS-P-wetherbeei_contig64:550..6491683186910.1538522-CDS-P-wetherbeei_contig64:550..649Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig64 551..649 -
1683186910.1640944-CDS-P-wetherbeei_contig64:883..9631683186910.1640944-CDS-P-wetherbeei_contig64:883..963Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig64 884..963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig64.1.1prot_P-wetherbeei_contig64.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig64 94..963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig64.1.1

>prot_P-wetherbeei_contig64.1.1 ID=prot_P-wetherbeei_contig64.1.1|Name=mRNA_P-wetherbeei_contig64.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
QGQTILHNNTINKELGTLWKATSAEDRSAYEAMATKDKLRYLREMKEYKP
VEGYRREVPRINAPKTANGAGAASVPLCRPAYSLFASQERRGVLESSSRP
ARARMSKIFGQRWHHLNPAEAQLYAELEEVDFLRYEEGA
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mRNA from alignment at P-wetherbeei_contig64:94..963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig64.1.1 ID=mRNA_P-wetherbeei_contig64.1.1|Name=mRNA_P-wetherbeei_contig64.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=870bp|location=Sequence derived from alignment at P-wetherbeei_contig64:94..963- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCCAAACCATCCTTCACAACAATACCATCAACAAGGAACTAGGGAC
CTTGTGGAAGGCGACATCAGCAGAAGATCGGTCAGTTACCTTTCCATTCA
TTTGTCCTCTGAATGTGTTCAGTTTCTACAGAGATCAAATTGCCTCCCTT
TCAGACCTCTTTTGCAACTTCTATTTGTTTCTCTGAAAGAAGAGACATTC
TATTTCTTTCTGCCGCTGAAATTGGTGCCAATGGTTTCAATGTTCGTCGA
AAGGCCATTCTAGTCCCGAACCGTTGAGTAAGAGTGGAGATTACTTCTTG
CCTTTCGCTCGCAGGAGCGCCTACGAGGCGATGGCTACTAAGGACAAGCT
GCGCTACCTTCGAGAAATGAAGGAGTATAAGCCAGTCGAAGGGTATCGCC
GAGAAGTACCACGGTACGAGCTCGTCTTGTTCCAACTGAGCTCCATCCAG
GCAGAAACGTCCCTAAGTATCGACTTTCCTTTCCACCCTCTCAATTTTTT
GCAGCATCAACGCGCCAAAGACCGCCAATGGTGCGGGCGCGGCCTCCGTC
CCGCTGTGTCGACCAGCGTACAGCCTTTTCGCCAGTCAGGTGAGGTCGTA
ATATACAAATAATGAGAAGTGCATATCTCTTCGTCCAACGATGATCTAAG
CTTCTTTGCGCCAGCAAGGGCGACGAGTTAACTTGCAACGTGCATTCCTC
CCCCTCAATCCCGCTAGGAGAGGAGAGGAGTGCTGGAGTCAAGCTCGCGG
CCTGCGAGGGCGCGGATGAGCAAAATATTTGGCCAGCGTTGGCACCACCT
GAATCCGGCCGAAGCCCAGCTCTATGCAGAGCTCGAGGAGGTGGACTTTT
TGCGTTACGAGGAGGGCGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig64:94..963-

>mRNA_P-wetherbeei_contig64.1.1 ID=mRNA_P-wetherbeei_contig64.1.1|Name=mRNA_P-wetherbeei_contig64.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig64:94..963- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCCAAACCATCCTTCACAACAATACCATCAACAAGGAACTAGGGAC
CTTGTGGAAGGCGACATCAGCAGAAGATCGGAGCGCCTACGAGGCGATGG
CTACTAAGGACAAGCTGCGCTACCTTCGAGAAATGAAGGAGTATAAGCCA
GTCGAAGGGTATCGCCGAGAAGTACCACGCATCAACGCGCCAAAGACCGC
CAATGGTGCGGGCGCGGCCTCCGTCCCGCTGTGTCGACCAGCGTACAGCC
TTTTCGCCAGTCAGGAGAGGAGAGGAGTGCTGGAGTCAAGCTCGCGGCCT
GCGAGGGCGCGGATGAGCAAAATATTTGGCCAGCGTTGGCACCACCTGAA
TCCGGCCGAAGCCCAGCTCTATGCAGAGCTCGAGGAGGTGGACTTTTTGC
GTTACGAGGAGGGCGCA
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