mRNA_P-wetherbeei_contig6396.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6396.1.3
Unique NamemRNA_P-wetherbeei_contig6396.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6396.1.3 vs. uniprot
Match: A0A836CKS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.230e-7
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:  769 LAERTEPVEVGVRMSG-AW-RRRGLVRLRISFVRLEAWIVGASGLNLPREPQD--LSCRVTWRGRPKASRGSPAWQNCFCLS 1002
            LA R  PVE+ +R +G  W   R ++R+R++ VRL+ W++GASG   P  P D  L+ RVTWRGR  A     +W   FCL+
Sbjct:  181 LASRPYPVELPLRAAGDRWGAARAVLRVRLTMVRLQLWLLGASGFCAPVPPGDPPLALRVTWRGRELAVPRHASWTQGFCLN 262
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6396.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CKS8_9STRA6.230e-743.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6396contigP-wetherbeei_contig6396:185..3457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1573
Hectar predicted targeting categoryother localisation
Exons8
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-04_000540.1
Cds size1572
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6396.1.3prot_P-wetherbeei_contig6396.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6396 185..3457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186909.9177268-CDS-P-wetherbeei_contig6396:184..3881683186909.9177268-CDS-P-wetherbeei_contig6396:184..388Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6396 185..388 -
1683186909.928852-CDS-P-wetherbeei_contig6396:633..7931683186909.928852-CDS-P-wetherbeei_contig6396:633..793Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6396 634..793 -
1683186909.9415157-CDS-P-wetherbeei_contig6396:1103..11941683186909.9415157-CDS-P-wetherbeei_contig6396:1103..1194Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6396 1104..1194 -
1683186909.954242-CDS-P-wetherbeei_contig6396:1451..16501683186909.954242-CDS-P-wetherbeei_contig6396:1451..1650Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6396 1452..1650 -
1683186909.9668543-CDS-P-wetherbeei_contig6396:1892..20151683186909.9668543-CDS-P-wetherbeei_contig6396:1892..2015Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6396 1893..2015 -
1683186909.9787164-CDS-P-wetherbeei_contig6396:2223..23221683186909.9787164-CDS-P-wetherbeei_contig6396:2223..2322Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6396 2224..2322 -
1683186909.9908662-CDS-P-wetherbeei_contig6396:2539..30851683186909.9908662-CDS-P-wetherbeei_contig6396:2539..3085Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6396 2540..3085 -
1683186910.0071936-CDS-P-wetherbeei_contig6396:3307..34571683186910.0071936-CDS-P-wetherbeei_contig6396:3307..3457Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6396 3308..3457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6396.1.3

>prot_P-wetherbeei_contig6396.1.3 ID=prot_P-wetherbeei_contig6396.1.3|Name=mRNA_P-wetherbeei_contig6396.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=524bp
DPPGNNVLELEVRERFASRPRAHSIRLSSMGRVGTPSTPLSTGMTSPHMH
ADGARRRTLSETISRSGSGGSLATAAKYHADFTEVTASAGLVAAAAMASS
LRSASVCSPGAMPPGKSGGAKAMAAAGGAASPVAACGSNGGLVGPAQHRL
HRDSGKSAVAAATATSTHPGSRHSSSGNGAAVWGHRGSGSGGSGGGSGDG
EREPPEVKDLLTDDSLFDPGAILTKGMATVTQKVLALVTEDELVGTVRLP
ESRMRQLAERTEPVEVGVRMSGAWRRRGLVRLRISFVRLEAWIVGASGLN
LPREPQDLSCRVTWRGRPKASRGSPAWQNCFCLSSRAATLSLDVRPPAAA
ARRRRVTLTVSRAMHLSTFDPVGLADLLNSTAKSKEVGTAEVHESGFRFT
WDRSGKCFVIYNVKKAKFTLLGSESTLATTLLGFSAADHIAAPSPRELAD
PHAPIEPKRKYMSVQSDELPRPLFEPEWQQVTWGPTLLEVMNGGQLAVEV
WSHQTAAAADAAASAAAAAVPHPL
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mRNA from alignment at P-wetherbeei_contig6396:185..3457-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6396.1.3 ID=mRNA_P-wetherbeei_contig6396.1.3|Name=mRNA_P-wetherbeei_contig6396.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3273bp|location=Sequence derived from alignment at P-wetherbeei_contig6396:185..3457- (Phaeothamnion wetherbeei SAG_119_79)
GATCCGCCGGGCAACAACGTTTTAGAGCTCGAGGTGCGCGAGCGCTTCGC
CAGCCGCCCGCGCGCTCACAGCATCCGCCTTTCTTCTATGGGGCGGGTGG
GGACCCCGTCTACGCCACTTTCTACGGGAATGACCTCACCGCACATGCAC
GTAAGTGGCGGAAGAGATTGCAGACAAAGTGTGTCCTGATCGTTTTGCTG
CTTCGTTGAAGAGGGACTGTCTTCTCCGGTGCTTTGGAGTATTTGGAGTT
TTATGCCGTGCTGGCCTGCTCCTGCACCAGCTTCCCCTTGTGTGATACAC
AAGCTGCGCGAGAATTCCTTTGTGAAAGTAACTTCTCCCAGAACTACGCT
TTTTTCGCGTCCTTTGGCCCAGGCCGACGGCGCGAGGCGAAGAACGCTGT
CGGAGACCATATCTCGCTCCGGCTCGGGAGGAAGCTTGGCAACCGCAGCG
AAATACCACGCTGATTTTACCGAAGTAACCGCTTCAGCCGGATTAGTAGC
TGCAGCAGCGATGGCGTCTTCGCTCCGCAGTGCTAGCGTCTGCAGTCCTG
GGGCCATGCCGCCGGGCAAGAGCGGCGGCGCAAAAGCGATGGCGGCAGCG
GGCGGTGCGGCGTCCCCAGTGGCCGCCTGCGGAAGCAACGGAGGCCTGGT
GGGGCCGGCGCAGCATCGCCTGCACCGGGATTCCGGAAAGTCCGCGGTTG
CAGCGGCGACAGCGACGTCTACTCACCCCGGATCTCGGCACAGTTCTTCT
GGCAACGGGGCGGCCGTGTGGGGGCACCGCGGTAGCGGCAGCGGTGGCAG
TGGCGGAGGCAGTGGCGACGGGGAGCGGGAGCCCCCCGAGGTGAAGGATC
TCCTGACGGACGACTCGCTCTTTGACCCTGGAGCCATCCTGACCAAGGGC
ATGGCCACGGTCACGCAGGCGAGCTGATTTTGTTAGAAGTGAACCTGTAC
GTTTCTAGGCGAGCTCTTCGCGAGCGGCCGTGAGTCTGCATGGACGCTCG
TCGATTTGATCTCGTGTCGATCGAAAGCGTGATCTGATTCGTTCCATTGG
CTCTTCCCCGTTGCGACTTGGGCTCAGGAGCGCTGACCTACTACTACTTT
TTCCTGCGGCCTTTTGAGTTCCTCCAAAACAACAGAAGGTGCTGGCGTTG
GTGACGGAGGACGAACTCGTGGGGACGGTGCGCCTCCCCGAGTCGCGGAT
GCGACAGCTCGCCGAGAGGACAGAGCCAGTGGAGGTGAGCACATGCTCAT
CGAGCCGGCATTTTCTGCAGGCGGCATCTTTTGAAGAGATTGGATCGCTC
AGTTGGGACTGGCATTCTTGCACCTGCTTGCCTACTTTGGCGTGGCACTG
CGCCGCTTCGCTGTGAAACCACACGGGACAGTGCTGGACAGATGGTACTA
CTTACTCCCGCCTTTTTTAATCCGCTGCGTGAACTGTGGCAGGTGGGCGT
ACGCATGAGCGGAGCTTGGAGGCGGCGCGGCTTGGTGCGGTTACGCATCA
GCTTTGTGCGGTTGGAGGCCTGGATTGTCGGTGCCAGCGGTCTCAACCTG
CCACGCGAACCTCAGGTATGTACGGGAGGGATTTAGCTCCGGTTTCGTTT
CTGCCTATCAGGACACGGTTTTTCAACGTTGGAGATTGTAGCTTCGGGGG
TAACGGGGGTTCCCTCTTGCCAAGAGATCAAGCTTGTTTCGATTCGAATG
GTTTGAATCGGCCAATCTCTCTCACTAGCTTTACCGCGCTAGCTCCCGCC
TTAAATTTTTGGTTTCATACGGATTGTGCTGCTTGACGTCACCGCGTTTT
CCTGCAGGATCTATCGTGCCGCGTGACGTGGCGCGGACGCCCCAAAGCCT
CCCGCGGCTCTCCAGCGTGGCAGAATTGTTTCTGCCTCAGCTCCCGCGCC
GCCACGCTCTCGCTTGACGTCCGCCCGCCGGCCGCCGCCGCGCGCCGACG
CCGTGTGACGCTCACCGTGTCCCGCGCCATGCACCTAAGCACCTTCGATC
CTGTCGGTGAGCCCGTGTGCGGTTAGCTCTTGGCAGCTTCGTAATGTCAC
GTCGCTTGGCGAGCCGGTCGGAAATGCCAACTAGTGGTTTACAGTCGAGT
CGTGCAGTCGTCGTTCTTGAATTCGCCGTTCCTTGTACTCCACGTGTCGT
ATGAGAGAGGAAGCAACAGAAATGGTTCAGACCTTTCTCGTGGCGTATCC
CCGATGTATGTCTTTTTCCTGGCTCTGCTGCTGGCGTCATTGCTGATGCT
ACCACCGCGGCAGGGCTGGCCGACCTGCTTAACAGCACCGCCAAGAGCAA
GGAGGTCGGGACGGCGGAAGTCCACGAGTCCGGCTTCCGCTTTACCTGGG
ACAGGTATGTGGCCCCATTTGCCGCACCACTGCAAGTAGCGGCATCGGGG
TTGGTGCGAATTGGAACAAGGGGGCGGTGGCGTTGTATTGCGTAGATATC
AGCATTTGCTGAACTGTGTCAATCGGGAGCATGCTTCTGGAACCCAACAT
TGCACGAAGTGCCTCGCTCGTACCATTTCCCGTTGCCTCTACCCTTCCCC
CGTACTATCTCCGGCCGCCGTCGCCGCCGTCGCCGCCGTCGCCGCCGCTG
TCGCTGCTGCCGCCTGTGTTGCTGCCGCCGCCGCTGTTGCGGCATTACTG
TGCCGGAGTCGCAGGTCAGGCAAGTGCTTCGTCATTTACAACGTCAAGAA
GGCAAAGTTTACGCTGCTCGGCAGCGAGAGCACGCTGGCCACGACCCTGC
TGGGGTTCAGCGCCGCGGACCACATTGCCGCGCCCAGTCCCCGCGAGCTG
GCGGATCCCCATGCTCCGATCGAGGTAAACTTTTTGAAGGAAAAATGGGT
TTGTTGGGCAGTAGAGGGCTTTTGGTTTTCCTCTTACACAAGATACGCCA
CTAAAAGGAAATGACTTGCTCATTTACTACCATGAAGTTTAACGAGGATC
CAGGCAGCTGCTGCCTGCGTCCTTTGTTTTGCTGACCTCCATAGCTGCCG
CCAATTCCAATTCTGCCGCGCAATTAAAACCGTTCCGAACCACCTGTGAC
GCCACCACATACGATGCAGCCGAAGCGCAAGTACATGTCAGTGCAGAGTG
ACGAGCTGCCGCGGCCGTTGTTCGAGCCGGAGTGGCAGCAGGTCACGTGG
GGCCCCACCCTTCTCGAGGTGATGAACGGCGGCCAACTGGCGGTGGAGGT
GTGGTCGCACCAGACGGCAGCCGCCGCCGATGCCGCGGCGTCGGCGGCGG
CAGCTGCCGTGCCGCACCCGCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6396:185..3457-

>mRNA_P-wetherbeei_contig6396.1.3 ID=mRNA_P-wetherbeei_contig6396.1.3|Name=mRNA_P-wetherbeei_contig6396.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1572bp|location=Sequence derived from alignment at P-wetherbeei_contig6396:185..3457- (Phaeothamnion wetherbeei SAG_119_79)
GATCCGCCGGGCAACAACGTTTTAGAGCTCGAGGTGCGCGAGCGCTTCGC
CAGCCGCCCGCGCGCTCACAGCATCCGCCTTTCTTCTATGGGGCGGGTGG
GGACCCCGTCTACGCCACTTTCTACGGGAATGACCTCACCGCACATGCAC
GCCGACGGCGCGAGGCGAAGAACGCTGTCGGAGACCATATCTCGCTCCGG
CTCGGGAGGAAGCTTGGCAACCGCAGCGAAATACCACGCTGATTTTACCG
AAGTAACCGCTTCAGCCGGATTAGTAGCTGCAGCAGCGATGGCGTCTTCG
CTCCGCAGTGCTAGCGTCTGCAGTCCTGGGGCCATGCCGCCGGGCAAGAG
CGGCGGCGCAAAAGCGATGGCGGCAGCGGGCGGTGCGGCGTCCCCAGTGG
CCGCCTGCGGAAGCAACGGAGGCCTGGTGGGGCCGGCGCAGCATCGCCTG
CACCGGGATTCCGGAAAGTCCGCGGTTGCAGCGGCGACAGCGACGTCTAC
TCACCCCGGATCTCGGCACAGTTCTTCTGGCAACGGGGCGGCCGTGTGGG
GGCACCGCGGTAGCGGCAGCGGTGGCAGTGGCGGAGGCAGTGGCGACGGG
GAGCGGGAGCCCCCCGAGGTGAAGGATCTCCTGACGGACGACTCGCTCTT
TGACCCTGGAGCCATCCTGACCAAGGGCATGGCCACGGTCACGCAGAAGG
TGCTGGCGTTGGTGACGGAGGACGAACTCGTGGGGACGGTGCGCCTCCCC
GAGTCGCGGATGCGACAGCTCGCCGAGAGGACAGAGCCAGTGGAGGTGGG
CGTACGCATGAGCGGAGCTTGGAGGCGGCGCGGCTTGGTGCGGTTACGCA
TCAGCTTTGTGCGGTTGGAGGCCTGGATTGTCGGTGCCAGCGGTCTCAAC
CTGCCACGCGAACCTCAGGATCTATCGTGCCGCGTGACGTGGCGCGGACG
CCCCAAAGCCTCCCGCGGCTCTCCAGCGTGGCAGAATTGTTTCTGCCTCA
GCTCCCGCGCCGCCACGCTCTCGCTTGACGTCCGCCCGCCGGCCGCCGCC
GCGCGCCGACGCCGTGTGACGCTCACCGTGTCCCGCGCCATGCACCTAAG
CACCTTCGATCCTGTCGGGCTGGCCGACCTGCTTAACAGCACCGCCAAGA
GCAAGGAGGTCGGGACGGCGGAAGTCCACGAGTCCGGCTTCCGCTTTACC
TGGGACAGGTCAGGCAAGTGCTTCGTCATTTACAACGTCAAGAAGGCAAA
GTTTACGCTGCTCGGCAGCGAGAGCACGCTGGCCACGACCCTGCTGGGGT
TCAGCGCCGCGGACCACATTGCCGCGCCCAGTCCCCGCGAGCTGGCGGAT
CCCCATGCTCCGATCGAGCCGAAGCGCAAGTACATGTCAGTGCAGAGTGA
CGAGCTGCCGCGGCCGTTGTTCGAGCCGGAGTGGCAGCAGGTCACGTGGG
GCCCCACCCTTCTCGAGGTGATGAACGGCGGCCAACTGGCGGTGGAGGTG
TGGTCGCACCAGACGGCAGCCGCCGCCGATGCCGCGGCGTCGGCGGCGGC
AGCTGCCGTGCCGCACCCGCTA
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